>TNR1B_MOUSE (P25119) Tumor necrosis factor receptor superfamily member 1B|
           precursor (Tumor necrosis factor receptor 2) (TNF-R2)
           (Tumor necrosis factor receptor type II) (p75) (p80
           TNF-alpha receptor)
          Length = 474

 Score = 33.5 bits (75), Expect = 0.27
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
 Frame = -2

Query: 240 CRRPRR*ISACTGTRRCRTPCHLCTCRCHCSRLDPC----GTASSAARRNPCLRRASLPA 73
           C + +  + AC   R C    H  +CR  C RL  C    G ASS A     L +A  P 
Sbjct: 111 CTKQQNRVCACEAGRYCALKTHSGSCR-QCMRLSKCGPGFGVASSRAPNGNVLCKACAPG 169

Query: 72  T 70
           T
Sbjct: 170 T 170

>POLN_SLDV (Q8QL53) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
            [Contains: P123; mRNA capping enzyme nsP1 (EC 2.1.1.-)
            (EC 2.7.7.-) (Nonstructural protein 1);
            Protease/triphosphatase/NTPase/helicase nsP2 (EC
            3.4.22.-) (EC 3.1.3.33) (EC 3.6.1.1
          Length = 2593

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +3

Query: 225  DEDAGSSHCAKGASTAAVRSGRRATGGGVSFAY*YATTNIKQSDAHSTTPSST 383
            D+D GS    +GA+    R G+R   GG  F+    T ++ Q   H+T  ++T
Sbjct: 1957 DQDTGSEPSGRGAAVRTRRRGQRDGPGGYIFSSDQGTAHLSQ---HNTQTNNT 2006

>CBF3B_YEAST (P40969) Centromere DNA-binding protein complex CBF3 subunit B|
           (Centromere protein 3)
          Length = 608

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 195 RCRTPCHLCTCR-CHCSRLDPCGTASSAARRNPCLRRASL 79
           + + PC +CT R   C R+ PCG      + + C++   L
Sbjct: 9   KSKHPCSVCTRRKVKCDRMIPCGNCRKRGQDSECMKSTKL 48

>PRM2_RATFU (Q91VE1) Protamine-2 (Protamine-P2) (Sperm histone P2)|
          Length = 105

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 16/47 (34%), Positives = 17/47 (36%)
 Frame = -2

Query: 294 HGVLTARPRWRRPWRSGCCRRPRR*ISACTGTRRCRTPCHLCTCRCH 154
           H +   R   RR  R  CC R R         RR R  C  C   CH
Sbjct: 59  HRIHKRRRSCRRRRRHSCCHRRRHRRGCRRSRRRRRCKCRKCRRHCH 105

>KRA99_HUMAN (Q9BYP9) Keratin-associated protein 9-9 (Keratin-associated protein|
           9.9) (Ultrahigh sulfur keratin-associated protein 9.9)
          Length = 154

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
 Frame = -2

Query: 249 SGCCRRPRR*ISACTGTRRCRTPCHLCTCRCHCSRLDPCGTA---SSAARRNPCLRRASL 79
           S CC+   R   AC     CRT C   TC   C     CG++   SS+     C R    
Sbjct: 45  SSCCQPCCR--PACCQNTCCRTTCCQPTCLSSCCGQTSCGSSCGQSSSCAPVYCRRTCYY 102

Query: 78  PAT 70
           P T
Sbjct: 103 PTT 105

>HEMZ_RHOS4 (P51008) Coproporphyrinogen III oxidase, anaerobic 2 (EC 1.3.99.22)|
           (Coproporphyrinogenase) (Coprogen oxidase)
          Length = 450

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = -2

Query: 192 CRTPCHLCTCRCHCSRLD-PCGTASSAARRNPCLRRASLPATKGMRRRSWGYGGWP 28
           CR  C  C CR   +  D P    ++A +    L RA L     + R  WG GG P
Sbjct: 60  CRRLCWFCACRTQGTSSDAPVRAYAAALKSELALLRARLAPGVRLARMHWG-GGTP 114

>KRA44_HUMAN (Q9BYR3) Keratin-associated protein 4-4 (Keratin-associated protein|
           4.4) (Ultrahigh sulfur keratin-associated protein 4.4)
          Length = 166

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = -2

Query: 252 RSGCCRRPRR*ISACTGTRRCRTPCHLCTCRCHCSRLDPCGTASSAARRNPC 97
           R+ CCR P   +S+C   + C+T C   TC CH     P    SS  R   C
Sbjct: 32  RTTCCR-PSCCVSSCCRPQCCQTTCCRTTC-CH-----PSCCVSSCCRPQCC 76

>ODFP_BOVIN (Q29438) Outer dense fiber protein|
          Length = 262

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 14/50 (28%), Positives = 20/50 (40%)
 Frame = -2

Query: 246 GCCRRPRR*ISACTGTRRCRTPCHLCTCRCHCSRLDPCGTASSAARRNPC 97
           G C +       CT       PC+ C+    C+  +PC   S  +  NPC
Sbjct: 193 GSCVKIESPCYPCTSPCNPCNPCNPCSPCSPCNPCNPCSPCSPCSPCNPC 242

>MT_ICTPU (O93571) Metallothionein (MT)|
          Length = 60

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -2

Query: 207 TGTRRCRTPCHLCTCRCHCSRLDPCGTASSAARR 106
           TGT  C T C    C+C C +   C    S   +
Sbjct: 9   TGTCNCGTSCKCSNCQCACCKKSCCSCCPSGCSK 42

>KR410_HUMAN (Q9BYQ7) Keratin-associated protein 4-10 (Keratin-associated|
           protein 4.10) (Ultrahigh sulfur keratin-associated
           protein 4.10)
          Length = 127

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
 Frame = -2

Query: 249 SGCCR--------RPRR*ISACTGTRRCRTPCHLCTCRCHCSRLDPCGTA 124
           S CCR        RP   +S+C     C+T C    CR  C R   CG++
Sbjct: 81  SSCCRPLCCQTTCRPSCGVSSCCRPLCCQTTC----CRTTCCRPSCCGSS 126

>POLN_SPDV (Q8JJX1) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
            [Contains: P123; mRNA capping enzyme nsP1 (EC 2.1.1.-)
            (EC 2.7.7.-) (Nonstructural protein 1);
            Protease/triphosphatase/NTPase/helicase nsP2 (EC
            3.4.22.-) (EC 3.1.3.33) (EC 3.6.1.1
          Length = 2601

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 225  DEDAGSSHCAKGASTAAVRSGRRATGGGVSFAY*YATTNIKQSDAHSTTPSST 383
            D+D G+   ++GA+    R G+R   GG  F+    T ++ Q   H+T  ++T
Sbjct: 1965 DQDTGTEPSSRGAAVRTRRRGQRDGLGGYIFSSDQGTAHLSQ---HNTQTNNT 2014

>SPB4_EMENI (Q5B8F4) ATP-dependent rRNA helicase spb4 (EC 3.6.1.-)|
          Length = 638

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -1

Query: 304 PPVARRPDRTAAVEAPLAQWLLPASSSMNICLHRHSTLQNALSPLYM 164
           PP         AV  PL++W+L A SSM     R + +Q +  PL+M
Sbjct: 5   PPSGTSSRAWDAVNPPLSEWVLDAVSSMGFT--RMTPVQASAIPLFM 49

>FA12_PIG (O97507) Coagulation factor XII precursor (EC 3.4.21.38) (Hageman|
           factor) (HAF) [Contains: Coagulation factor XIIa heavy
           chain; Coagulation factor XIIa light chain]
          Length = 616

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
 Frame = -2

Query: 183 PCHLCTCRCHCSRLDPCGTASSAARRNPCLRRASLPATKGMR--RRSWGYGGWPC 25
           P  +  C+C   +      AS     NPCL   S   T+G R  R   GY G  C
Sbjct: 155 PAGVSKCQCKGPKAQCKPVASQVCSTNPCLNGGSCLQTEGHRLCRCPTGYAGRLC 209

>ODFP_RAT (P21769) Outer dense fiber protein (Protein RT7) (RTS 5/1)|
          Length = 245

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -2

Query: 192 CRTPCHLCTCRCHCSRLDPCGTASSAARRNPC 97
           C +PC+ C     CS   PCG         PC
Sbjct: 191 CTSPCNPCNPCSPCSPCGPCGPCGPCGPCGPC 222

>TPT2_BRAOB (P52178) Triose phosphate/phosphate translocator, non-green|
           plastid, chloroplast precursor (CTPT)
          Length = 402

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 304 PPVARRPDRTAAVEAPLAQWL-LPASSSMNICLHRHSTLQNAL 179
           PP+ RR  R A+ ++PL  W  LP+ SS ++  +R  T   A+
Sbjct: 44  PPLPRRSWRLASSDSPLRAWSGLPSVSSPSLDTNRFKTAATAV 86

>RIMB1_MOUSE (Q7TNF8) Peripheral-type benzodiazepine receptor-associated protein 1|
            (PRAX-1) (Peripheral benzodiazepine receptor-interacting
            protein) (PBR-IP) (RIM-binding protein 1) (RIM-BP1)
          Length = 1846

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -2

Query: 162  RCHCSRLDPCGTASSAARRNPCLRRASLPATKGMR 58
            R HCSRL   G   ++AR  P   R SLP  +G R
Sbjct: 1416 REHCSRLLGNGGPQASARPVPPRERGSLPVIEGTR 1450

>NOTC3_RAT (Q9R172) Neurogenic locus notch homolog protein 3 precursor (Notch 3)|
            [Contains: Notch 3 extracellular truncation; Notch 3
            intracellular domain]
          Length = 2319

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -2

Query: 195  RCRTPCHLCTCRCHCSRLDPCGTASSAARRNPCLRRAS 82
            RC  P  L    C  SR  P G  +++    PCL   S
Sbjct: 1314 RCACPPGLSGPSCRVSRASPSGATNTSCAATPCLHGGS 1351

>XFIN_XENLA (P08045) Zinc finger protein Xfin|
          Length = 1350

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +3

Query: 99  TGSFLQRCLLCHKDLAENNDIY----MYRGDKAFCSVEC 203
           TG    +CLLC K  ++N+D++    ++ G+K F    C
Sbjct: 554 TGEKPFKCLLCKKSFSQNSDLHKHWRIHTGEKPFPCYTC 592

>KRA45_HUMAN (Q9BYR2) Keratin-associated protein 4-5 (Keratin-associated protein|
           4.5) (Ultrahigh sulfur keratin-associated protein 4.5)
          Length = 186

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -2

Query: 243 CCRRPRR*ISACTGTRRCRTPCHLCTCRCHCSRLDPC 133
           CC RP     +C  T  CRT C   TC C    +  C
Sbjct: 79  CCCRP-----SCCQTTCCRTTCCRTTCCCPSCCVSSC 110

>RB_RAT (P33568) Retinoblastoma-associated protein (PP105) (RB) (Fragment)|
          Length = 899

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 21/63 (33%), Positives = 29/63 (46%)
 Frame = -1

Query: 457 LMAVLNSIL*TALXSFLVAFAHVSYVLLGVVLCASDCLMLVVAYQYAKLTPPPVARRPDR 278
           L   +NS+L   +       A    V +   L  S  LML V   + KL+PP + R P +
Sbjct: 153 LSTEINSMLVLKVSWITFLLAKGEVVQMEDDLVISFQLMLCVLDYFIKLSPPALLREPYK 212

Query: 277 TAA 269
           TAA
Sbjct: 213 TAA 215


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,326,092
Number of Sequences: 219361
Number of extensions: 930948
Number of successful extensions: 3509
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3482
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)