ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast57a08 |
|---|---|
| Clone Library Name | barley_pub |
>TOM20_SOLTU (P92792) Mitochondrial import receptor subunit TOM20 (Translocase| of outer membrane 20 kDa subunit) Length = 204 Score = 149 bits (375), Expect = 5e-36 Identities = 73/121 (60%), Positives = 91/121 (75%) Frame = +1 Query: 136 ERLFFFDLACKTAKATYDENPLDADNLTRWGGALLELSQMHNGPESLKCLEDAESKLDEA 315 +RL FF+ A K+A+ TY +NPLDADNLTRWGGALLELSQ ES + + DA SKL+EA Sbjct: 8 DRLLFFEHARKSAETTYAQNPLDADNLTRWGGALLELSQFQPVAESKQMISDATSKLEEA 67 Query: 316 LRIDPNKADALWCLGNALTSRGFFTSETVQANECFEKATGCFQRAVDVEPANELYRKSLD 495 L ++P K DALWCLGNA TS F T + +A FEKAT CFQ+A D +P+N+LYRKSL+ Sbjct: 68 LTVNPEKHDALWCLGNAHTSHVFLTPDMDEAKVYFEKATQCFQQAFDADPSNDLYRKSLE 127 Query: 496 L 498 + Sbjct: 128 V 128
>TO202_ARATH (P82873) Mitochondrial import receptor subunit TOM20-2 (Translocase| of outer membrane 20 kDa subunit 2) Length = 210 Score = 127 bits (318), Expect = 2e-29 Identities = 63/120 (52%), Positives = 82/120 (68%) Frame = +1 Query: 136 ERLFFFDLACKTAKATYDENPLDADNLTRWGGALLELSQMHNGPESLKCLEDAESKLDEA 315 ERL F+ A K ++A Y +PLD++NL +WGGALLELSQ PE+ L DA SKL+EA Sbjct: 9 ERLIMFEHARKNSEAQYKNDPLDSENLLKWGGALLELSQFQPIPEAKLMLNDAISKLEEA 68 Query: 316 LRIDPNKADALWCLGNALTSRGFFTSETVQANECFEKATGCFQRAVDVEPANELYRKSLD 495 L I+P K ALWC+ NA T+ F+ + +A E F+KAT FQRA + +P N+ YRKSLD Sbjct: 69 LTINPGKHQALWCIANAYTAHAFYVHDPEEAKEHFDKATEYFQRAENEDPGNDTYRKSLD 128
>TO204_ARATH (P82805) Mitochondrial import receptor subunit TOM20-4 (Translocase| of outer membrane 20 kDa subunit 4) Length = 187 Score = 125 bits (315), Expect = 5e-29 Identities = 68/121 (56%), Positives = 86/121 (71%) Frame = +1 Query: 136 ERLFFFDLACKTAKATYDENPLDADNLTRWGGALLELSQMHNGPESLKCLEDAESKLDEA 315 ERL F+ A K A+ATY +NPLDA+NLTRW GALLELSQ P+ + + +A KL EA Sbjct: 8 ERLMVFEHARKVAEATYVKNPLDAENLTRWAGALLELSQFQTEPKQM--ILEAILKLGEA 65 Query: 316 LRIDPNKADALWCLGNALTSRGFFTSETVQANECFEKATGCFQRAVDVEPANELYRKSLD 495 L IDP K DALW +GNA S GF +S+ +A++ FEKA+ FQ AV+ +P +ELYRKSL Sbjct: 66 LVIDPKKHDALWLIGNAHLSFGFLSSDQTEASDNFEKASQFFQLAVEEQPESELYRKSLT 125 Query: 496 L 498 L Sbjct: 126 L 126
>TO203_ARATH (P82874) Mitochondrial import receptor subunit TOM20-3 (Translocase| of outer membrane 20 kDa subunit 3) Length = 202 Score = 123 bits (308), Expect = 3e-28 Identities = 59/121 (48%), Positives = 83/121 (68%) Frame = +1 Query: 136 ERLFFFDLACKTAKATYDENPLDADNLTRWGGALLELSQMHNGPESLKCLEDAESKLDEA 315 +R+ F+ + A+ TY NPLDADNLTRWGG LLELSQ H+ ++ + +++A +K +EA Sbjct: 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEA 67 Query: 316 LRIDPNKADALWCLGNALTSRGFFTSETVQANECFEKATGCFQRAVDVEPANELYRKSLD 495 L IDP K +A+WC+GNA TS F T + +A F+ AT FQ+AVD +P N Y KSL+ Sbjct: 68 LLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE 127 Query: 496 L 498 + Sbjct: 128 M 128
>TO201_ARATH (P82872) Mitochondrial import receptor subunit TOM20-1 (Translocase| of outer membrane 20 kDa subunit 1) Length = 188 Score = 113 bits (282), Expect = 3e-25 Identities = 62/121 (51%), Positives = 79/121 (65%) Frame = +1 Query: 136 ERLFFFDLACKTAKATYDENPLDADNLTRWGGALLELSQMHNGPESLKCLEDAESKLDEA 315 ++L FF+ K A+ TY NP DADNL RWG ALLELSQ N +SLK ++DA SKL++A Sbjct: 2 DKLNFFEEIRKDAEETYKLNPEDADNLMRWGEALLELSQFQNVIDSLKMIQDAISKLEDA 61 Query: 316 LRIDPNKADALWCLGNALTSRGFFTSETVQANECFEKATGCFQRAVDVEPANELYRKSLD 495 + IDP K DA+WCLGNA TS T + QA F A F AV +P N++Y KSL+ Sbjct: 62 ILIDPMKHDAVWCLGNAYTSYARLTPDDTQARLNFGLAYLFFGIAVAQQPDNQVYHKSLE 121 Query: 496 L 498 + Sbjct: 122 M 122
>SGTB_MOUSE (Q8VD33) Small glutamine-rich tetratricopeptide repeat-containing| protein B Length = 304 Score = 34.3 bits (77), Expect = 0.19 Identities = 21/70 (30%), Positives = 36/70 (51%) Frame = +1 Query: 289 DAESKLDEALRIDPNKADALWCLGNALTSRGFFTSETVQANECFEKATGCFQRAVDVEPA 468 DA ++A+ ID + A +G ALT A FE+A +Q+A+D++P Sbjct: 137 DAIKDCEKAIAIDSKYSKAYGRMGLALT-----------AMNKFEEAVTSYQKALDLDPE 185 Query: 469 NELYRKSLDL 498 N+ Y+ +L + Sbjct: 186 NDSYKSNLKI 195
>SGTB_HUMAN (Q96EQ0) Small glutamine-rich tetratricopeptide repeat-containing| protein B (Small glutamine-rich protein with tetratricopeptide repeats 2) Length = 304 Score = 33.9 bits (76), Expect = 0.25 Identities = 21/70 (30%), Positives = 36/70 (51%) Frame = +1 Query: 289 DAESKLDEALRIDPNKADALWCLGNALTSRGFFTSETVQANECFEKATGCFQRAVDVEPA 468 DA ++A+ ID + A +G ALT A FE+A +Q+A+D++P Sbjct: 137 DAIKDCEKAIAIDSKYSKAYGRMGLALT-----------ALNKFEEAVTSYQKALDLDPE 185 Query: 469 NELYRKSLDL 498 N+ Y+ +L + Sbjct: 186 NDSYKSNLKI 195
>SERC_ARATH (Q96255) Phosphoserine aminotransferase, chloroplast precursor (EC| 2.6.1.52) (PSAT) Length = 430 Score = 32.7 bits (73), Expect = 0.55 Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 4/83 (4%) Frame = +1 Query: 136 ERLFFFDLACKTAKATYDENPL---DADNLTRWGGALLELSQM-HNGPESLKCLEDAESK 303 ER+F F AT EN L AD L W G+ + + +M H G E L ++ AES Sbjct: 71 ERVFNF----AAGPATLPENVLLKAQAD-LYNWRGSGMSVMEMSHRGKEFLSIIQKAESD 125 Query: 304 LDEALRIDPNKADALWCLGNALT 372 L + L I P + L+ G A T Sbjct: 126 LRQLLEI-PQEYSVLFLQGGATT 147
>OGT1_CAEEL (O18158) UDP-N-acetylglucosamine--peptide| N-acetylglucosaminyltransferase (EC 2.4.1.-) (O-GlcNAc) (OGT) Length = 1151 Score = 32.7 bits (73), Expect = 0.55 Identities = 21/62 (33%), Positives = 28/62 (45%) Frame = +1 Query: 283 LEDAESKLDEALRIDPNKADALWCLGNALTSRGFFTSETVQANECFEKATGCFQRAVDVE 462 L DA EA+RI P ADA +GN L G ++ A C+ RA+ + Sbjct: 481 LNDAILHYKEAIRIAPTFADAYSNMGNTLKEMGDSSA-----------AIACYNRAIQIN 529 Query: 463 PA 468 PA Sbjct: 530 PA 531
>SEC_ARATH (Q9M8Y0) Probable UDP-N-acetylglucosamine--peptide| N-acetylglucosaminyltransferase SEC (EC 2.4.1.-) (Protein SECRET AGENT) Length = 977 Score = 31.2 bits (69), Expect = 1.6 Identities = 22/77 (28%), Positives = 33/77 (42%) Frame = +1 Query: 151 FDLACKTAKATYDENPLDADNLTRWGGALLELSQMHNGPESLKCLEDAESKLDEALRIDP 330 F A + + Y NPL DNL G +L + C+ ++ +EALRI P Sbjct: 69 FKQALEHSNMVYQRNPLRTDNLLLIGAIYYQLQEYD------MCI----ARNEEALRIQP 118 Query: 331 NKADALWCLGNALTSRG 381 A+ + NA +G Sbjct: 119 QFAECYGNMANAWKEKG 135
>OGT1_RAT (P56558) UDP-N-acetylglucosamine--peptide| N-acetylglucosaminyltransferase 110 kDa subunit (EC 2.4.1.-) (O-GlcNAc transferase p110 subunit) Length = 1036 Score = 30.8 bits (68), Expect = 2.1 Identities = 19/62 (30%), Positives = 30/62 (48%) Frame = +1 Query: 283 LEDAESKLDEALRIDPNKADALWCLGNALTSRGFFTSETVQANECFEKATGCFQRAVDVE 462 L++A EA+RI P ADA +GN T++ + + A C+ RA+ + Sbjct: 367 LQEALMHYKEAIRISPTFADAYSNMGN-----------TLKEMQDVQGALQCYTRAIQIN 415 Query: 463 PA 468 PA Sbjct: 416 PA 417
>OGT1_HUMAN (O15294) UDP-N-acetylglucosamine--peptide| N-acetylglucosaminyltransferase 110 kDa subunit (EC 2.4.1.-) (O-GlcNAc transferase p110 subunit) Length = 1046 Score = 30.8 bits (68), Expect = 2.1 Identities = 19/62 (30%), Positives = 30/62 (48%) Frame = +1 Query: 283 LEDAESKLDEALRIDPNKADALWCLGNALTSRGFFTSETVQANECFEKATGCFQRAVDVE 462 L++A EA+RI P ADA +GN T++ + + A C+ RA+ + Sbjct: 377 LQEALMHYKEAIRISPTFADAYSNMGN-----------TLKEMQDVQGALQCYTRAIQIN 425 Query: 463 PA 468 PA Sbjct: 426 PA 427
>SYT_CORGL (Q8NPZ0) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 695 Score = 30.4 bits (67), Expect = 2.7 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +1 Query: 217 TRWGGALLELSQMHNGPESLKCLEDAESKLDEALRIDPNKA 339 T G A+ EL + GPE++ C +DAE +L + + A Sbjct: 29 TAIGAAMRELDLPNKGPEAIVCAKDAEGQLKDLSHVPETTA 69
>US02_EHV1K (P32517) US1 protein| Length = 303 Score = 30.0 bits (66), Expect = 3.6 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Frame = +3 Query: 132 PGEALLLRPRLQDRQGHLRREPARRRQPDAMGRRSAGAVADA*RPGEPQVP--RRCG 296 PG L PR + +G +R R R P RS A A RPG+P+ P RR G Sbjct: 233 PGRPL---PRRRPSEGGMRAPRRRSRAPAPA--RSTAAAATPPRPGDPRAPAARRAG 284
>DNJC7_HUMAN (Q99615) DnaJ homolog subfamily C member 7 (Tetratricopeptide| repeat protein 2) (TPR repeat protein 2) Length = 494 Score = 29.3 bits (64), Expect = 6.1 Identities = 19/62 (30%), Positives = 29/62 (46%) Frame = +1 Query: 289 DAESKLDEALRIDPNKADALWCLGNALTSRGFFTSETVQANECFEKATGCFQRAVDVEPA 468 +A+S + LR+D ADAL+ G L +C EKA F +A+ + P Sbjct: 194 EAQSVASDILRMDSTNADALYVRGLCL-----------YYEDCIEKAVQFFVQALRMAPD 242 Query: 469 NE 474 +E Sbjct: 243 HE 244
>RPIA_BIFLO (Q8G3X9) Ribose-5-phosphate isomerase A (EC 5.3.1.6)| (Phosphoriboisomerase A) (PRI) Length = 232 Score = 28.9 bits (63), Expect = 7.9 Identities = 12/41 (29%), Positives = 20/41 (48%) Frame = -2 Query: 479 YNSFAGSTSTALWKQPVAFSKHSLAWTVSEVKNPREVRAFP 357 +N G + LW++ VA + + + W V E K + FP Sbjct: 96 FNGIKGGGAALLWEKIVATNSNQIVWIVDESKVVDTIGKFP 136
>L52_ADE02 (P03262) Late L1 52 kDa protein| Length = 415 Score = 28.9 bits (63), Expect = 7.9 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = +3 Query: 150 LRPRLQDRQGHLRREPARRRQPDAMGRRSAGAVADA*RPGEPQVPRR 290 +RP Q RQ +R+ R P A + ADA G+ + PRR Sbjct: 8 MRPPPQQRQEQEQRQTCRAPSPSPTASGGATSAADAAADGDYEPPRR 54
>KCNKC_RAT (Q9ERS1) Potassium channel subfamily K member 12 (Tandem pore| domain halothane-inhibited potassium channel 2) (THIK-2) Length = 430 Score = 28.9 bits (63), Expect = 7.9 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 8/92 (8%) Frame = +1 Query: 190 ENPLDADNLTRWGGALLELSQMHN--GPESLKCLEDAESKLDEALRIDPNK-----ADAL 348 E+P +A+ RWG L S H PE L E+ L +R D + A Sbjct: 61 ESPGEAEARARWGATLRNFSAAHGVAEPELRAFLRHYEAALAAGVRADALRPRWDFPGAF 120 Query: 349 WCLGNALTSRGF-FTSETVQANECFEKATGCF 441 + +G +++ GF T+ + F A G F Sbjct: 121 YFVGTVVSTIGFGMTTPATVGGKAFLIAYGLF 152
>KCNKC_HUMAN (Q9HB15) Potassium channel subfamily K member 12 (Tandem pore| domain halothane-inhibited potassium channel 2) (THIK-2) Length = 430 Score = 28.9 bits (63), Expect = 7.9 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 8/92 (8%) Frame = +1 Query: 190 ENPLDADNLTRWGGALLELSQMHN--GPESLKCLEDAESKLDEALRIDPNK-----ADAL 348 E+P +A+ RWG L S H PE L E+ L +R D + A Sbjct: 61 ESPGEAEARARWGATLRNFSAAHGVAEPELRAFLRHYEAALAAGVRADALRPRWDFPGAF 120 Query: 349 WCLGNALTSRGF-FTSETVQANECFEKATGCF 441 + +G +++ GF T+ + F A G F Sbjct: 121 YFVGTVVSTIGFGMTTPATVGGKAFLIAYGLF 152
>PDE6_CAEEL (Q9N2V9) Probable 3',5'-cyclic phosphodiesterase pde-6 (EC| 3.1.4.17) Length = 760 Score = 28.9 bits (63), Expect = 7.9 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +1 Query: 409 NECFEKATGCFQRAVDVEPANELYRKSL 492 N +E TGC + V +P +E+ RKSL Sbjct: 253 NRAYENVTGCIRSEVIGQPESEMRRKSL 280 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.134 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,276,566 Number of Sequences: 219361 Number of extensions: 1043078 Number of successful extensions: 3348 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3197 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3346 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3523384522 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
