ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast57a02 |
|---|---|
| Clone Library Name | barley_pub |
>TAU_MOUSE (P10637) Microtubule-associated protein tau (Neurofibrillary tangle| protein) (Paired helical filament-tau) (PHF-tau) Length = 732 Score = 33.5 bits (75), Expect = 0.22 Identities = 18/45 (40%), Positives = 21/45 (46%) Frame = +3 Query: 138 PCYHPTSLILGTLDPLGARSRAPSGGAPSRSPRRKCSVAPREIRP 272 PC PT LG+ DPL S P+ SP+ SV PR P Sbjct: 380 PCLSPTRPTLGSSDPLIKPSSPAVSPEPATSPKHVSSVTPRNGSP 424
>CAC1B_DISOM (P56698) Probable voltage-dependent N-type calcium channel alpha-1B| subunit (Voltage-gated calcium channel alpha subunit Cav2.2) (DOE-4) Length = 2326 Score = 31.2 bits (69), Expect = 1.1 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%) Frame = -2 Query: 271 GRISRGATEH--FLRGDRDGAPPEGARDRAPRGSRV 170 GR+SRG +EH L G+ P G R P G+R+ Sbjct: 2203 GRLSRGQSEHNHLLSGESQNRPYAGGDSRQPMGTRI 2238
>CCPR_CANGA (Q6FMG7) Cytochrome c peroxidase, mitochondrial precursor (EC| 1.11.1.5) (CCP) Length = 357 Score = 30.8 bits (68), Expect = 1.5 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Frame = +1 Query: 172 P*IPWAPDRAPLPEGRRPD---LPGGNAPSRPVRSGRQRLE 285 P IPW R LPE PD LP G+ + VR+ +RL+ Sbjct: 186 PKIPWRSGRTDLPEDMTPDNGRLPDGDKDANYVRNFYKRLD 226
>SQT1_CAEEL (P12114) Cuticle collagen sqt-1 (Protein squat-1) (Protein| roller-5) Length = 324 Score = 30.4 bits (67), Expect = 1.9 Identities = 15/43 (34%), Positives = 20/43 (46%) Frame = -3 Query: 252 RRSISSGEIGTAPLRKGRAIGRPGDLGFPGSAKSDGNTARWGE 124 R S+ P+ A+GRPG G PG +GN R G+ Sbjct: 161 RESVGCFTCPQGPVGPPGALGRPGPRGLPGPRGQNGNPGRDGQ 203
>TAU_RAT (P19332) Microtubule-associated protein tau (Neurofibrillary tangle| protein) (Paired helical filament-tau) (PHF-tau) Length = 751 Score = 30.0 bits (66), Expect = 2.5 Identities = 22/74 (29%), Positives = 30/74 (40%) Frame = +3 Query: 138 PCYHPTSLILGTLDPLGARSRAPSGGAPSRSPRRKCSVAPREIRPPKTRALTVTRRHGDP 317 PC PT G+ DPL S P+ SP+ SV PR P T+ + + G Sbjct: 399 PCLSPTRPTPGSSDPLIKPSSPAVCPEPATSPKYVSSVTPRN-GSPGTKQMKLKGADGKT 457 Query: 318 HDRLLLRLRGAEPG 359 ++ A PG Sbjct: 458 GAKIATPRGAATPG 471
>YT35_STRFR (P20186) Hypothetical 35.5 kDa protein in transposon Tn4556| Length = 348 Score = 30.0 bits (66), Expect = 2.5 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 6/45 (13%) Frame = +3 Query: 168 GTLDPLGARSRAPSGGAPSR-----SPRRKCSVAPR-EIRPPKTR 284 GT P AR+RAP+G +P+R R+C A R RPP R Sbjct: 290 GTPRPAAARARAPAGCSPARRTPSAPTDRRCRAARRGSPRPPAAR 334
>SECD_MYCTU (Q50634) Protein-export membrane protein secD| Length = 573 Score = 29.6 bits (65), Expect = 3.2 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Frame = +2 Query: 158 ADPGNPRSPGRPIARPFRRGAVPISPE--EMLRRAP*DPAAKDSSFDRHAAPWRSA*PSP 331 A P+ PG+P A P + P SP+ R P DPA + + P A P+ Sbjct: 137 APSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPNPTSPASPP--PAPPAE 194 Query: 332 TPAT 343 PAT Sbjct: 195 APAT 198
>TARSH_HUMAN (Q7Z7G0) Target of Nesh-SH3 precursor (Tarsh) (Nesh-binding| protein) (NeshBP) (ABI gene family member 3-binding protein) Length = 1075 Score = 29.6 bits (65), Expect = 3.2 Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 14/92 (15%) Frame = +1 Query: 49 RRRRGPLPPDTRPLHTRSVST*TPLL-----------APARRVTIRLR*SWEP*IPWAPD 195 +RR P PP T+P T S T TP + AP + I L+ P IP +P+ Sbjct: 471 KRRPRPKPPRTKPERTTSAGTITPKISKSPEPTWTTPAPGKTQFISLK----PKIPLSPE 526 Query: 196 ---RAPLPEGRRPDLPGGNAPSRPVRSGRQRL 282 P P+ + P AP +P S R R+ Sbjct: 527 VTHTKPAPK-QTP-----RAPPKPKTSPRPRI 552
>CI066_HUMAN (Q5T8R8) Protein C9orf66| Length = 295 Score = 29.6 bits (65), Expect = 3.2 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 3/62 (4%) Frame = +3 Query: 183 LGARSRAP---SGGAPSRSPRRKCSVAPREIRPPKTRALTVTRRHGDPHDRLLLRLRGAE 353 LG S AP S G R+ R V P ++ + HG P R LL RGAE Sbjct: 96 LGPCSEAPLHTSAGLSGRNLRAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAE 155 Query: 354 PG 359 G Sbjct: 156 SG 157
>MENC_MYCLE (Q9CBB2) Probable O-succinylbenzoate synthase (EC 4.2.1.-) (OSB| synthase) (OSBS) (4-(2'-carboxyphenyl)-4-oxybutyric acid synthase) (O-succinylbenzoic acid synthase) Length = 334 Score = 29.6 bits (65), Expect = 3.2 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = -2 Query: 220 GAPPEGARDRAPRGSRVPRIS 158 G PPEG RDR P + VP +S Sbjct: 67 GEPPEGRRDRIPINATVPAVS 87
>YDC9_SCHPO (Q10172) Hypothetical protein C25G10.09c in chromosome I| Length = 1794 Score = 29.6 bits (65), Expect = 3.2 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Frame = +1 Query: 181 PWAPDRA------PLPEGRRPDLPGGNAPSRPVRSGRQRLEL*PSRGAMAIRMT 324 P AP R P G +P +PG P P R+G Q + P R M +MT Sbjct: 700 PMAPQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMA--PQRTGMQPQMT 751
>K1543_HUMAN (Q9P1Y5) Protein KIAA1543| Length = 1249 Score = 29.3 bits (64), Expect = 4.2 Identities = 16/43 (37%), Positives = 22/43 (51%) Frame = +3 Query: 195 SRAPSGGAPSRSPRRKCSVAPREIRPPKTRALTVTRRHGDPHD 323 +R G PS+SPR +P+ RP + R +TR PHD Sbjct: 766 TRRSPGPGPSQSPR-----SPKHTRPAELRLAPLTRVLTPPHD 803
>CAC1I_HUMAN (Q9P0X4) Voltage-dependent T-type calcium channel alpha-1I subunit| (Voltage-gated calcium channel alpha subunit Cav3.3) (Ca(v)3.3) Length = 2223 Score = 29.3 bits (64), Expect = 4.2 Identities = 23/65 (35%), Positives = 26/65 (40%) Frame = +1 Query: 64 PLPPDTRPLHTRSVST*TPLLAPARRVTIRLR*SWEP*IPWAPDRAPLPEGRRPDLPGGN 243 P PP R S+ + L AP R L WA DR+ P GR P LP G Sbjct: 2140 PPPPAPGLTPARKFSSTSSLAAPGRPHAAALAHGLARSPSWAADRSKDPPGRAP-LPMGL 2198 Query: 244 APSRP 258 P P Sbjct: 2199 GPLAP 2203
>GLGB_STRAU (P52980) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 764 Score = 29.3 bits (64), Expect = 4.2 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%) Frame = +3 Query: 177 DPLGARSRAPSGGAPSRSPRRKCSVAPREIRP-----PKTRALTVTRRHGDPH 320 D AP+ +R+PR + + P +RP + RA + RH DPH Sbjct: 13 DKAAPEPAAPAAPKGARAPRARRAAPPHGVRPAPALAAEERARLLEGRHHDPH 65
>CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor| Length = 1364 Score = 29.3 bits (64), Expect = 4.2 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = -3 Query: 216 PLRKGRAIGRPGDLGFPGSAKSDGNTARWGEE 121 P+ A G PG++GFPG G+ + GE+ Sbjct: 477 PIGPAGARGEPGNIGFPGPKGPSGDPGKAGEK 508
>MSRE_HUMAN (P21757) Macrophage scavenger receptor types I and II (Macrophage| acetylated LDL receptor I and II) (Scavenger receptor class A member 1) (CD204 antigen) Length = 451 Score = 28.9 bits (63), Expect = 5.5 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = -3 Query: 234 GEIGTAPLRKGR-AIGRPGDLGFPGSAKSDGNTARWGEE 121 G IG L+ R AIG PG G PG A GN+ G++ Sbjct: 297 GPIGPPGLKGDRGAIGFPGSRGLPGYAGRPGNSGPKGQK 335
>HORN_HUMAN (Q86YZ3) Hornerin| Length = 2850 Score = 28.9 bits (63), Expect = 5.5 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Frame = -3 Query: 336 GVGDGHADRHGAA*RSKLESLAAGSHGAR--RSISSGEIGTAPLRKGRAIGRPGDLGFPG 163 G GH+ HG + +S + G HGA +S S G+ G+ + GR G G Sbjct: 2477 GSSSGHSSTHGQHGSTSGQSSSCGQHGASSGQSSSHGQHGSGS-SQSSGYGRQGS----G 2531 Query: 162 SAKSDGNTAR 133 S +S G+ R Sbjct: 2532 SGQSPGHGQR 2541 Score = 28.9 bits (63), Expect = 5.5 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Frame = -3 Query: 336 GVGDGHADRHGAA*RSKLESLAAGSHGAR--RSISSGEIGTAPLRKGRAIGRPGDLGFPG 163 G GH+ HG + +S + G HGA +S S G+ G+ + GR G G Sbjct: 2007 GSSSGHSSTHGQHGSASGQSSSCGQHGASSGQSSSHGQHGSGS-SQSSGYGRQGS----G 2061 Query: 162 SAKSDGNTAR 133 S +S G+ R Sbjct: 2062 SGQSPGHGQR 2071 Score = 28.9 bits (63), Expect = 5.5 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Frame = -3 Query: 336 GVGDGHADRHGAA*RSKLESLAAGSHGAR--RSISSGEIGTAPLRKGRAIGRPGDLGFPG 163 G GH+ HG + +S + G HGA +S S G+ G+ + GR G G Sbjct: 1537 GSSSGHSSTHGQHGSTSGQSSSCGQHGASSGQSSSHGQHGSGS-SQSSGYGRQGS----G 1591 Query: 162 SAKSDGNTAR 133 S +S G+ R Sbjct: 1592 SGQSPGHGQR 1601 Score = 28.9 bits (63), Expect = 5.5 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Frame = -3 Query: 336 GVGDGHADRHGAA*RSKLESLAAGSHGAR--RSISSGEIGTAPLRKGRAIGRPGDLGFPG 163 G GH+ HG + +S + G HGA +S S G+ G+ + GR G G Sbjct: 1067 GSSSGHSSTHGQHGSTSGQSSSCGQHGASSGQSSSHGQHGSGS-SQSSGYGRQGS----G 1121 Query: 162 SAKSDGNTAR 133 S +S G+ R Sbjct: 1122 SGQSPGHGQR 1131
>KCNQ3_HUMAN (O43525) Potassium voltage-gated channel subfamily KQT member 3| (Voltage-gated potassium channel subunit Kv7.3) (Potassium channel alpha subunit KvLQT3) (KQT-like 3) Length = 872 Score = 28.9 bits (63), Expect = 5.5 Identities = 17/64 (26%), Positives = 28/64 (43%) Frame = -3 Query: 336 GVGDGHADRHGAA*RSKLESLAAGSHGARRSISSGEIGTAPLRKGRAIGRPGDLGFPGSA 157 G GDG GAA + ++ AAG + ++ G++ L G + G L G Sbjct: 14 GGGDGGGGGGGAANPAGGDAAAAGDEERKVGLAPGDVEQVTLALGAGADKDGTLLLEGGG 73 Query: 156 KSDG 145 + +G Sbjct: 74 RDEG 77
>KCNQ3_BOVIN (P58126) Potassium voltage-gated channel subfamily KQT member 3| (Voltage-gated potassium channel subunit Kv7.3) (Potassium channel alpha subunit KvLQT3) (KQT-like 3) Length = 866 Score = 28.9 bits (63), Expect = 5.5 Identities = 17/64 (26%), Positives = 28/64 (43%) Frame = -3 Query: 336 GVGDGHADRHGAA*RSKLESLAAGSHGARRSISSGEIGTAPLRKGRAIGRPGDLGFPGSA 157 G GDG GAA + ++ AAG + ++ G++ L G + G L G Sbjct: 14 GGGDGGGGGGGAANPAGGDAAAAGDEERKVGLAPGDVEQVTLALGAGADKDGTLLLEGGG 73 Query: 156 KSDG 145 + +G Sbjct: 74 RDEG 77
>RS6_RHORT (Q2RXC6) 30S ribosomal protein S6| Length = 160 Score = 28.9 bits (63), Expect = 5.5 Identities = 18/37 (48%), Positives = 18/37 (48%) Frame = -2 Query: 277 FGGRISRGATEHFLRGDRDGAPPEGARDRAPRGSRVP 167 FG R RG RGDR G DRAPRG R P Sbjct: 120 FGDRPERGDRPD--RGDRGGDRGGDRGDRAPRGERRP 154
>GDF6_BOVIN (P55106) Growth/differentiation factor 6 precursor (GDF-6)| (Cartilage-derived morphogenetic protein 2) (CDMP-2) (Fragment) Length = 436 Score = 28.5 bits (62), Expect = 7.2 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = +3 Query: 198 RAPSGGAPSRSPRRKCSVAPREIRPPKTRALTVTRRHGDPHDRLLL 335 RA GG P + + P++ PP R+L RR P +R LL Sbjct: 207 RAAWGGEPGAAEDEARTPGPQQPPPPDLRSLGFGRRVRTPQERALL 252
>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22| Length = 1010 Score = 28.5 bits (62), Expect = 7.2 Identities = 16/43 (37%), Positives = 22/43 (51%) Frame = +3 Query: 198 RAPSGGAPSRSPRRKCSVAPREIRPPKTRALTVTRRHGDPHDR 326 R+P PS SPRR S++PR+ R+ + T R P R Sbjct: 54 RSPGERTPSPSPRRDRSLSPRDQPHSHPRSRSPTPRSQSPSRR 96
>IF2C_EUGGR (Q9XEK9) Translation initiation factor IF-2, chloroplast (Fragment)| Length = 822 Score = 28.5 bits (62), Expect = 7.2 Identities = 20/60 (33%), Positives = 25/60 (41%) Frame = +2 Query: 158 ADPGNPRSPGRPIARPFRRGAVPISPEEMLRRAP*DPAAKDSSFDRHAAPWRSA*PSPTP 337 ADP P +P P+ R R A+P SP M+ D DR W P+P P Sbjct: 61 ADPQPPATPSAPVLRRPVRTAMPASPPRMVINL-------DDIPDRSKPVW----PAPPP 109
>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein| Length = 1509 Score = 28.5 bits (62), Expect = 7.2 Identities = 20/59 (33%), Positives = 28/59 (47%) Frame = +2 Query: 164 PGNPRSPGRPIARPFRRGAVPISPEEMLRRAP*DPAAKDSSFDRHAAPWRSA*PSPTPA 340 PG P+ P RP ++P PE L AP P + SS ++ S P+PTP+ Sbjct: 804 PGPPQPPLRPQSQP---------PEGPLPPAPHLPPSSTSSAVASSSETSSRLPAPTPS 853
>ABLM1_HUMAN (O14639) Actin-binding LIM protein 1 (Actin-binding LIM protein| family member 1) (abLIM-1) (Actin-binding double-zinc-finger protein) (LIMAB1) (Limatin) Length = 778 Score = 28.5 bits (62), Expect = 7.2 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +2 Query: 146 PSDFADPGNPRSPGRPIARPFRRGAVPISP 235 P F PGN S GR P+R ++P++P Sbjct: 474 PQHFHRPGNEPSSGRNSPLPYRPDSLPLTP 503
>RANB3_PONPY (Q5R4Y2) Ran-binding protein 3 (RanBP3)| Length = 494 Score = 28.5 bits (62), Expect = 7.2 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%) Frame = +3 Query: 180 PLGARSRAPSGGAPSRSPR--RKCSVAPREIRPPKTRALTVT 299 P R +APS G PS+ P+ ++ + P ++ P+ +AL+ T Sbjct: 79 PTLIRGQAPSAGLPSQKPKEQQRSVLRPAVLQAPQPKALSQT 120
>COIA1_HUMAN (P39060) Collagen alpha-1(XVIII) chain precursor [Contains:| Endostatin] Length = 1516 Score = 28.5 bits (62), Expect = 7.2 Identities = 13/23 (56%), Positives = 13/23 (56%) Frame = -3 Query: 192 GRPGDLGFPGSAKSDGNTARWGE 124 GRPG GFPG A GN GE Sbjct: 910 GRPGFAGFPGPAGPKGNLGSKGE 932
>ABL_DROME (P00522) Tyrosine-protein kinase Abl (EC 2.7.10.2) (Abelson| protein) (D-ash) Length = 1620 Score = 28.5 bits (62), Expect = 7.2 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Frame = +3 Query: 201 APSGGAPSRSPRRKCSVAPREIRP--PKTRALTVTRRHGDPHDR 326 A SG A S S S+ P+ ++ P +ALT H DPH + Sbjct: 667 AASGCASSSSATASLSLTPQMVKKGLPGGQALTPNAHHNDPHQQ 710
>CTND2_MOUSE (O35927) Catenin delta-2 (Neural plakophilin-related ARM-repeat| protein) (NPRAP) (Neurojungin) Length = 1247 Score = 28.1 bits (61), Expect = 9.4 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = +3 Query: 150 PTSLILGTLDPLGARSRAPSGGAPSRSPRR 239 PT L G P GA AP G +P +SP R Sbjct: 274 PTKLQRGGSAPEGAAYAAPRGSSPKQSPSR 303
>CTND2_HUMAN (Q9UQB3) Catenin delta-2 (Delta-catenin) (Neural| plakophilin-related ARM-repeat protein) (NPRAP) (Neurojungin) (GT24) Length = 1225 Score = 28.1 bits (61), Expect = 9.4 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = +3 Query: 150 PTSLILGTLDPLGARSRAPSGGAPSRSPRR 239 PT L G P GA AP G +P +SP R Sbjct: 277 PTKLQRGGSAPEGATYAAPRGSSPKQSPSR 306
>FOG1_MOUSE (O35615) Zinc finger protein ZFPM1 (Zinc finger protein multitype 1)| (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1) Length = 995 Score = 28.1 bits (61), Expect = 9.4 Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 1/62 (1%) Frame = +2 Query: 158 ADPG-NPRSPGRPIARPFRRGAVPISPEEMLRRAP*DPAAKDSSFDRHAAPWRSA*PSPT 334 A PG PR+P R G P SP P DPA D+ A P+P Sbjct: 900 ASPGAEPRTPAERAPRDSPDGRAPRSPSPAPENTPSDPA------DQGARTPSKGPPAPA 953 Query: 335 PA 340 PA Sbjct: 954 PA 955
>SON_HUMAN (P18583) SON protein (SON3) (Negative regulatory element-binding| protein) (NRE-binding protein) (DBP-5) (Bax antagonist selected in saccharomyces 1) (BASS1) Length = 2426 Score = 28.1 bits (61), Expect = 9.4 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 12/58 (20%) Frame = +3 Query: 189 ARSRAPSGGAPSRSP-----------RRKCSVAP-REIRPPKTRALTVTRRHGDPHDR 326 ARSR PS + S +P RR S++P R R P R+ T +RR P R Sbjct: 1920 ARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRR 1977
>CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22| Length = 907 Score = 28.1 bits (61), Expect = 9.4 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 3/33 (9%) Frame = +3 Query: 189 ARSRAPSGGAPSRSPRR---KCSVAPREIRPPK 278 +RSR+P G + +RSP R + S APR PP+ Sbjct: 777 SRSRSPRGRSYTRSPDRAGPQASTAPRSGGPPR 809
>SON_MOUSE (Q9QX47) SON protein| Length = 2404 Score = 28.1 bits (61), Expect = 9.4 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 12/58 (20%) Frame = +3 Query: 189 ARSRAPSGGAPSRSP-----------RRKCSVAP-REIRPPKTRALTVTRRHGDPHDR 326 ARSR PS + S +P RR S++P R R P R+ T +RR P R Sbjct: 1905 ARSRTPSRRSRSHTPSRRRRSISVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRR 1962
>BAGS_BOMMO (Q9BLJ6) BAG domain-containing protein Samui| Length = 677 Score = 28.1 bits (61), Expect = 9.4 Identities = 18/57 (31%), Positives = 26/57 (45%) Frame = +2 Query: 164 PGNPRSPGRPIARPFRRGAVPISPEEMLRRAP*DPAAKDSSFDRHAAPWRSA*PSPT 334 P RS G P + +R+G P ++ A ++F R A+P RS P PT Sbjct: 260 PNFSRSFGTPFNKTYRQGPQPFVQQK---------AYPQTAFARGASPQRSQSPKPT 307
>CO4A1_CAEEL (P17139) Collagen alpha-1(IV) chain precursor| Length = 1759 Score = 28.1 bits (61), Expect = 9.4 Identities = 9/25 (36%), Positives = 16/25 (64%) Frame = -3 Query: 195 IGRPGDLGFPGSAKSDGNTARWGEE 121 +G PGD+G+PG+ +G+ G + Sbjct: 1205 LGTPGDVGYPGAPGENGDNGNQGRD 1229 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,019,854 Number of Sequences: 219361 Number of extensions: 931027 Number of successful extensions: 4939 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 3598 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4894 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
