>YLC1_CAEEL (Q8WQG1) Hypothetical protein C35D10.1|
          Length = 222

 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 18/54 (33%), Positives = 34/54 (62%)
 Frame = +2

Query: 236 TSNTKVILNGGQKVTFARPDGYFAFHNVPAGTHLIEVSSLGYFFSPVRVDISAR 397
           ++  ++ LN GQ + F R D  F    VP GT+++++ +  + F P+RVDI+++
Sbjct: 48  SAGARIHLNHGQYMGFVRQDCTFRVDFVPTGTYIVQIENTDFVFEPIRVDITSK 101

>TDH_PROAC (Q6AAR3) L-threonine 3-dehydrogenase (EC 1.1.1.103)|
          Length = 345

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = +2

Query: 164 SGEGHTIAGRIRIEAARGFGLPAKTSNTKVILNGGQKVTFARPDGYFAFHNVP 322
           SGEGH + GR R   A    L   T      +NG     F  P G    H++P
Sbjct: 86  SGEGHYVCGRCRACLAGKRHLCRNTQGIGYAVNGAYCQYFVMPAGNVWVHHIP 138

>COBD_SYNY3 (P74475) Cobalamin biosynthesis protein cobD|
          Length = 342

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -3

Query: 279 VTF*PPLSITFVFDVLAGRPKPLAASILMRPAMVCPSPDPGWS 151
           +T+ P     F+  +L+G+PK   A I+ R   + PSP+ GWS
Sbjct: 223 LTWLPCRLTVFMLAILSGKPKQTWA-IVRRDGPLDPSPNSGWS 264

>PECF_ANASP (P35798) Bilin biosynthesis protein pecF|
          Length = 173

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 161 GSGEGHTIAGRIRIEAARGFG-LPAKTSNTKVILNGGQKVTFA 286
           G+   +   G +R  AARG G + + TSNT++I N  +K+ +A
Sbjct: 81  GTSVANHCQGNVRRIAARGLGKIASTTSNTEIINNAQEKLIWA 123

>Y1908_NEIMA (Q9JTA4) UPF0210 protein NMA1908|
          Length = 451

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = +2

Query: 158 PGSGEGHTIAGRIRIEAARGFGLPAKTSNTKVI-LNG---GQKVTFARPDGYFAFHNVPA 325
           PG    HTI+G I  EAA G  + +KT+  ++I + G   G  V F    GY     V  
Sbjct: 371 PGDTPAHTISGIIADEAAIGM-INSKTTAVRIIPVTGKTVGDSVEFGGLLGYAPVMPVKE 429

Query: 326 GTHLIEVSSLGYFFSPVR 379
           G+  + V+  G   +PV+
Sbjct: 430 GSCEVFVNRGGRIPAPVQ 447

>Y1652_NEIMB (Q9JYC3) UPF0210 protein NMB1652|
          Length = 451

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = +2

Query: 158 PGSGEGHTIAGRIRIEAARGFGLPAKTSNTKVI-LNG---GQKVTFARPDGYFAFHNVPA 325
           PG    HTI+G I  EAA G  + +KT+  ++I + G   G  V F    GY     V  
Sbjct: 371 PGDTPAHTISGIIADEAAIGM-INSKTTAVRIIPVTGKTVGDSVEFGGLLGYAPVMPVKE 429

Query: 326 GTHLIEVSSLGYFFSPVR 379
           G+  + V+  G   +PV+
Sbjct: 430 GSCEVFVNRGGRIPAPVQ 447

>RPOC_STAS1 (Q49V53) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1207

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +2

Query: 191 RIRIEAARGFGLPAKTS--NTKVILNGGQKVTFAR--PDGYFAFHNVPAGTHLIEVSSLG 358
           RI + AA  F  P  T   N K++L    KV F    PD  FA+ N P  T+L   +   
Sbjct: 536 RIGVHAA-SFNNPTFTEEQNKKILLTSVGKVIFNEIIPDS-FAYINEPTQTNLENKTPEK 593

Query: 359 YFFSPVRV 382
           YF +P  +
Sbjct: 594 YFIAPTEI 601


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,339,678
Number of Sequences: 219361
Number of extensions: 988458
Number of successful extensions: 2380
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2380
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)