ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast56h12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X59138.1|ZMR28DNA Z.mays rab28 gene 64 2e-07
2ref|XM_462778.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.045
3tpg|BK000842.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M209,... 46 0.045
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.045
5dbj|AP002872.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.045
6gb|CP000009.1| Gluconobacter oxydans 621H, complete genome 46 0.045
7gb|AC183432.1| Ornithorhynchus anatinus BAC clone OABb-35B8 from... 44 0.18
8gb|AC020763.6| Homo sapiens chromosome 16 clone RP11-394B2, comp... 44 0.18
9gb|AC012076.5| Homo sapiens BAC clone RP11-497D24 from 2, comple... 44 0.18
10ref|XM_988352.1| PREDICTED: Mus musculus phosphogluconate dehydr... 42 0.71
11ref|XM_001002937.1| PREDICTED: Mus musculus phosphogluconate deh... 42 0.71
12ref|XM_001003312.1| PREDICTED: Mus musculus phosphogluconate deh... 42 0.71
13ref|XM_844080.1| PREDICTED: Canis familiaris similar to fibrosin... 42 0.71
14gb|AF345444.1| Rattus norvegicus potassium channel beta subunit ... 42 0.71
15ref|XM_862733.1| PREDICTED: Canis familiaris similar to sorting ... 42 0.71
16ref|XM_848613.1| PREDICTED: Canis familiaris similar to sorting ... 42 0.71
17ref|NM_181365.2| Rattus norvegicus Kv channel interacting protei... 42 0.71
18emb|AL136301.21| Human DNA sequence from clone RP11-195L15 on ch... 42 0.71
19gb|AC155318.2| Ornithorhynchus anatinus chromosome UNK clone OAB... 42 0.71
20dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.71
21dbj|AP006505.1| Mus musculus genomic DNA, chromosome 4, clone: R... 42 0.71
22dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 0.71
23dbj|AP006061.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.71
24emb|AJ240681.1|GGA240681 Gallus gallus DNA for LEI0334 SSCP marker 42 0.71
25gb|AC162179.2| Mus musculus BAC clone RP23-197K11 from chromosom... 42 0.71
26emb|AL731655.8| Mouse DNA sequence from clone RP23-249G3 on chro... 42 0.71
27ref|XM_469733.1| Oryza sativa (japonica cultivar-group), mRNA 40 2.8
28gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 2.8
29gb|AC146522.2| Oryza sativa (japonica cultivar-group) chromosome... 40 2.8
30gb|AC137586.3| Oryza sativa (japonica cultivar-group) chromosome... 40 2.8
31gb|AC135512.6| Oryza sativa (japonica cultivar-group) chromosome... 40 2.8
32gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 2.8
33ref|NM_008242.1| Mus musculus forkhead box D1 (Foxd1), mRNA 40 2.8
34gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 2.8
35emb|CT009550.5| Mouse DNA sequence from clone RP23-38F20 on chro... 40 2.8
36gb|AC125460.4| Mus musculus BAC clone RP24-448D10 from chromosom... 40 2.8
37gb|AC129599.3| Mus musculus BAC clone RP23-349A5 from chromosome... 40 2.8
38gb|AC121839.3| Mus musculus BAC clone RP24-76E2 from chromosome ... 40 2.8
39gb|AC116588.3| Mus musculus BAC clone RP23-448E6 from 9, complet... 40 2.8
40gb|AC117624.10| Mus musculus chromosome 8, clone RP23-114M9, com... 40 2.8
41gb|AC100736.5| Mus musculus chromosome 15, clone RP24-336O6, com... 40 2.8
42emb|AL034380.26|HS50O24 Human DNA sequence from clone RP1-50O24 ... 40 2.8
43emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome... 40 2.8
44emb|BX248336.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 2.8
45emb|AJ400877.1|HSA400877 Homo sapiens ASCL3 gene, CEGP1 gene, C1... 40 2.8
46gb|AC153982.8| Mus musculus 6 BAC RP24-280G3 (Roswell Park Cance... 40 2.8
47gb|AC087852.11| Oryza sativa chromosome 3 BAC OJ1124_H03 genomic... 40 2.8
48dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 2.8
49dbj|AK142034.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN ... 40 2.8
50dbj|AK132390.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 40 2.8
51gb|AC004873.3| Homo sapiens PAC clone RP4-742P4 from 1, complete... 40 2.8
52dbj|AK164408.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN ... 40 2.8
53gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 2.8
54gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 2.8
55dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
56dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
57dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
58dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
59gb|AC079296.5| Homo sapiens chromosome 11, clone RP11-467K18, co... 40 2.8
60gb|AC078797.20| Homo sapiens 3 BAC RP11-125E8 (Roswell Park Canc... 40 2.8
61dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
62dbj|AP004838.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
63emb|AL670413.19| Mouse DNA sequence from clone RP23-298E4 on chr... 40 2.8
64ref|NM_211469.1| Eremothecium gossypii AGL260Wp (AGL260W), mRNA 40 2.8
65emb|CT737399.2| Pan troglodytes chromosome X clone CH251-213G08 ... 40 2.8
66gb|L38607.1|MUSBF2TF Mus musculus (clones 1 and 5) transcription... 40 2.8
67gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 2.8
68gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 2.8
69emb|AL713933.6|CNS07YPE Oryza sativa chromosome 12, . BAC OJ1041... 40 2.8
70emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb... 40 2.8
71emb|AL732376.2|CNS08C8Z Oryza sativa chromosome 12, . BAC OSJNBa... 40 2.8
72gb|AC130213.3| Mus musculus BAC clone RP24-68J20 from 8, complet... 40 2.8
73ref|NG_000002.1| Homo sapiens immunoglobulin lambda locus (IGL@)... 40 2.8
74emb|AL034384.1|HSMTM0 Human chromosome Xq28, cosmid clones 7H3, ... 40 2.8
75dbj|D87003.1| Homo sapiens immunoglobulin lambda gene locus DNA,... 40 2.8 
>emb|X59138.1|ZMR28DNA Z.mays rab28 gene
          Length = 1846

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 180 ggcgccgtccgctacggcgacgtgttcccggc 211
           ||||||||||||||||||||||||||||||||
Sbjct: 557 ggcgccgtccgctacggcgacgtgttcccggc 588
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>ref|XM_462778.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 207

 Score = 46.1 bits (23), Expect = 0.045
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 140 ggcgggcggtggcggcgggcagg 162
           |||||||||||||||||||||||
Sbjct: 33  ggcgggcggtggcggcgggcagg 55
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>tpg|BK000842.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M209, complete sequence
          Length = 1208

 Score = 46.1 bits (23), Expect = 0.045
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 140 ggcgggcggtggcggcgggcagg 162
           |||||||||||||||||||||||
Sbjct: 573 ggcgggcggtggcggcgggcagg 595
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.045
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 140     ggcgggcggtggcggcgggcagg 162
               |||||||||||||||||||||||
Sbjct: 2493387 ggcgggcggtggcggcgggcagg 2493409
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>dbj|AP002872.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0416D03
          Length = 157112

 Score = 46.1 bits (23), Expect = 0.045
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 140   ggcgggcggtggcggcgggcagg 162
             |||||||||||||||||||||||
Sbjct: 47808 ggcgggcggtggcggcgggcagg 47830
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>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 46.1 bits (23), Expect = 0.045
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 142    cgggcggtggcggcgggcagggc 164
              |||||||||||||||||||||||
Sbjct: 868132 cgggcggtggcggcgggcagggc 868110
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>gb|AC183432.1| Ornithorhynchus anatinus BAC clone OABb-35B8 from chromosome unknown,
             complete sequence
          Length = 142253

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 150   ggcggcgggcagggccaggggcaggg 175
             |||||||||||||| |||||||||||
Sbjct: 68924 ggcggcgggcaggggcaggggcaggg 68949
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>gb|AC020763.6| Homo sapiens chromosome 16 clone RP11-394B2, complete sequence
          Length = 200838

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 159   cagggccaggggcagggaggag 180
             ||||||||||||||||||||||
Sbjct: 95933 cagggccaggggcagggaggag 95954
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>gb|AC012076.5| Homo sapiens BAC clone RP11-497D24 from 2, complete sequence
          Length = 212275

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 160    agggccaggggcagggaggagg 181
              ||||||||||||||||||||||
Sbjct: 200007 agggccaggggcagggaggagg 200028
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>ref|XM_988352.1| PREDICTED: Mus musculus phosphogluconate dehydrogenase, transcript
           variant 3 (Pgd), mRNA
          Length = 2576

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 155 cgggcagggccaggggcaggg 175
           |||||||||||||||||||||
Sbjct: 254 cgggcagggccaggggcaggg 274
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>ref|XM_001002937.1| PREDICTED: Mus musculus phosphogluconate dehydrogenase, transcript
           variant 9 (Pgd), mRNA
          Length = 2580

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 155 cgggcagggccaggggcaggg 175
           |||||||||||||||||||||
Sbjct: 254 cgggcagggccaggggcaggg 274
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>ref|XM_001003312.1| PREDICTED: Mus musculus phosphogluconate dehydrogenase, transcript
           variant 4 (Pgd), mRNA
          Length = 2576

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 155 cgggcagggccaggggcaggg 175
           |||||||||||||||||||||
Sbjct: 254 cgggcagggccaggggcaggg 274
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>ref|XM_844080.1| PREDICTED: Canis familiaris similar to fibrosin 1 (LOC607426), mRNA
          Length = 2529

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 128 cgaccaagcccaggcgggcggtggcggcg 156
           ||||||||||| |||| ||||||||||||
Sbjct: 309 cgaccaagccctggcgtgcggtggcggcg 281
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>gb|AF345444.1| Rattus norvegicus potassium channel beta subunit KChIP4 mRNA,
           complete cds
          Length = 1289

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 144 ggcggtggcggcgggcagggc 164
           |||||||||||||||||||||
Sbjct: 245 ggcggtggcggcgggcagggc 225
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>ref|XM_862733.1| PREDICTED: Canis familiaris similar to sorting nexin associated
           golgi protein 1, transcript variant 3 (LOC610530), mRNA
          Length = 3314

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 151 gcggcgggcagggccaggggcaggg 175
           ||||||||||||| |||||||||||
Sbjct: 329 gcggcgggcaggggcaggggcaggg 305
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>ref|XM_848613.1| PREDICTED: Canis familiaris similar to sorting nexin associated
           golgi protein 1, transcript variant 1 (LOC610530), mRNA
          Length = 3347

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 151 gcggcgggcagggccaggggcaggg 175
           ||||||||||||| |||||||||||
Sbjct: 329 gcggcgggcaggggcaggggcaggg 305
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>ref|NM_181365.2| Rattus norvegicus Kv channel interacting protein 4 (Kcnip4), mRNA
          Length = 1289

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 144 ggcggtggcggcgggcagggc 164
           |||||||||||||||||||||
Sbjct: 245 ggcggtggcggcgggcagggc 225
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>emb|AL136301.21| Human DNA sequence from clone RP11-195L15 on chromosome 13 Contains the
             5' end of the KPNA3 gene for karyopherin alpha 3 (importin
             alpha 4), a novel gene and two CpG islands, complete
             sequence
          Length = 48730

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 135   gcccaggcgggcggtggcggc 155
             |||||||||||||||||||||
Sbjct: 45940 gcccaggcgggcggtggcggc 45920
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>gb|AC155318.2| Ornithorhynchus anatinus chromosome UNK clone OABb-158A1, complete
             sequence
          Length = 163918

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 137   ccaggcgggcggtggcggcgggcag 161
             |||||||||| ||||||||||||||
Sbjct: 63778 ccaggcgggcagtggcggcgggcag 63802
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9,
              complete sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 142    cgggcggtggcggcgggcagg 162
              |||||||||||||||||||||
Sbjct: 324408 cgggcggtggcggcgggcagg 324428
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>dbj|AP006505.1| Mus musculus genomic DNA, chromosome 4, clone: RP23-266A3, complete
             sequence
          Length = 199759

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 155   cgggcagggccaggggcaggg 175
             |||||||||||||||||||||
Sbjct: 71195 cgggcagggccaggggcaggg 71215
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 149     tggcggcgggcagggccaggggcag 173
               |||||||||||||||| ||||||||
Sbjct: 8835409 tggcggcgggcagggcgaggggcag 8835385
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>dbj|AP006061.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0414D03
          Length = 169823

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 142   cgggcggtggcggcgggcagg 162
             |||||||||||||||||||||
Sbjct: 73007 cgggcggtggcggcgggcagg 73027
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>emb|AJ240681.1|GGA240681 Gallus gallus DNA for LEI0334 SSCP marker
          Length = 297

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 159 cagggccaggggcagggagga 179
           |||||||||||||||||||||
Sbjct: 172 cagggccaggggcagggagga 192
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>gb|AC162179.2| Mus musculus BAC clone RP23-197K11 from chromosome 9, complete sequence
          Length = 210741

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 154    gcgggcagggccaggggcagggaggaggc 182
              |||||||||||||||||| ||||| ||||
Sbjct: 172910 gcgggcagggccaggggctgggagcaggc 172938
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>emb|AL731655.8| Mouse DNA sequence from clone RP23-249G3 on chromosome 4, complete
             sequence
          Length = 126753

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 155   cgggcagggccaggggcaggg 175
             |||||||||||||||||||||
Sbjct: 46220 cgggcagggccaggggcaggg 46200
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>ref|XM_469733.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 765

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 96  atgagccaggggcagcagcggaggccgtcgtccgac 131
           |||||||||||||||| | |||||||| || |||||
Sbjct: 1   atgagccaggggcagccgaggaggccgccgcccgac 36
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 140     ggcgggcggtggcggcgggc 159
               ||||||||||||||||||||
Sbjct: 2230845 ggcgggcggtggcggcgggc 2230864
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>gb|AC146522.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0039A07
              map near 50283S, complete sequence
          Length = 158158

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 138    caggcgggcggtggcggcgggcag 161
              ||||||||||| ||||||||||||
Sbjct: 124633 caggcgggcggcggcggcgggcag 124610
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>gb|AC137586.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0054A16,
              complete sequence
          Length = 164605

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 150    ggcggcgggcagggccaggg 169
              ||||||||||||||||||||
Sbjct: 140930 ggcggcgggcagggccaggg 140911
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>gb|AC135512.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0057M06, complete sequence
          Length = 147673

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   ggcggcgggcagggccaggg 169
             ||||||||||||||||||||
Sbjct: 27958 ggcggcgggcagggccaggg 27939
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    ggcggtggcggcgggcaggg 163
              ||||||||||||||||||||
Sbjct: 927073 ggcggtggcggcgggcaggg 927092
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>ref|NM_008242.1| Mus musculus forkhead box D1 (Foxd1), mRNA
          Length = 2437

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 138  caggcgggcggtggcggcgg 157
            ||||||||||||||||||||
Sbjct: 1171 caggcgggcggtggcggcgg 1152
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 96       atgagccaggggcagcagcggaggccgtcgtccgac 131
                |||||||||||||||| | |||||||| || |||||
Sbjct: 30449305 atgagccaggggcagccgaggaggccgccgcccgac 30449270
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>emb|CT009550.5| Mouse DNA sequence from clone RP23-38F20 on chromosome 14, complete
              sequence
          Length = 229049

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 156    gggcagggccaggggcaggg 175
              ||||||||||||||||||||
Sbjct: 110658 gggcagggccaggggcaggg 110677
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>gb|AC125460.4| Mus musculus BAC clone RP24-448D10 from chromosome 15, complete sequence
          Length = 205859

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 156    gggcagggccaggggcaggg 175
              ||||||||||||||||||||
Sbjct: 149231 gggcagggccaggggcaggg 149250
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>gb|AC129599.3| Mus musculus BAC clone RP23-349A5 from chromosome 8, complete
            sequence
          Length = 188426

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 156  gggcagggccaggggcaggg 175
            ||||||||||||||||||||
Sbjct: 7321 gggcagggccaggggcaggg 7302



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 156  gggcagggccaggggcaggg 175
            ||||||||||||||||||||
Sbjct: 7309 gggcagggccaggggcaggg 7290
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>gb|AC121839.3| Mus musculus BAC clone RP24-76E2 from chromosome 13, complete sequence
          Length = 182835

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   caggcgggcggtggcggcgg 157
             ||||||||||||||||||||
Sbjct: 77230 caggcgggcggtggcggcgg 77211
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>gb|AC116588.3| Mus musculus BAC clone RP23-448E6 from 9, complete sequence
          Length = 189927

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 156    gggcagggccaggggcagggagga 179
              |||||||| |||||||||||||||
Sbjct: 121784 gggcaggggcaggggcagggagga 121761
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>gb|AC117624.10| Mus musculus chromosome 8, clone RP23-114M9, complete sequence
          Length = 207159

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 156    gggcagggccaggggcaggg 175
              ||||||||||||||||||||
Sbjct: 110193 gggcagggccaggggcaggg 110174
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>gb|AC100736.5| Mus musculus chromosome 15, clone RP24-336O6, complete sequence
          Length = 247275

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 156    gggcagggccaggggcaggg 175
              ||||||||||||||||||||
Sbjct: 243609 gggcagggccaggggcaggg 243590
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>emb|AL034380.26|HS50O24 Human DNA sequence from clone RP1-50O24 on chromosome 1p35.1-35.3
             Contains the 3' end of the SMARCF1 gene for SWI/SNF
             related, matrix associated, actin dependent regulator of
             chromatin (subfamily f, member 1), a novel gene
             (FLJ20477), the ZDHHC18 gene for zinc finger, DHHC domain
             containing 18, the SFN gene for stratifin, two novel
             genes, a novel gene (FLJ10349), the 3' end of a novel gene
             (FLJ12455) and two CpG islands, complete sequence
          Length = 157435

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 140   ggcgggcggtggcggcgggc 159
             ||||||||||||||||||||
Sbjct: 69593 ggcgggcggtggcggcgggc 69574
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>emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome; segment 3/13
          Length = 349564

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    ggcggtggcggcgggcaggg 163
              ||||||||||||||||||||
Sbjct: 242891 ggcggtggcggcgggcaggg 242910
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>emb|BX248336.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 3/14
          Length = 320050

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    ggcggtggcggcgggcaggg 163
              ||||||||||||||||||||
Sbjct: 261078 ggcggtggcggcgggcaggg 261097
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>emb|AJ400877.1|HSA400877 Homo sapiens ASCL3 gene, CEGP1 gene, C11orf14 gene, C11orf15 gene,
             C11orf16 gene and C11orf17 gene
          Length = 256164

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   gccaggggcagggaggaggc 182
             ||||||||||||||||||||
Sbjct: 33843 gccaggggcagggaggaggc 33824
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>gb|AC153982.8| Mus musculus 6 BAC RP24-280G3 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 163461

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   gggcagggccaggggcaggg 175
             ||||||||||||||||||||
Sbjct: 73628 gggcagggccaggggcaggg 73647
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>gb|AC087852.11| Oryza sativa chromosome 3 BAC OJ1124_H03 genomic sequence, complete
             sequence
          Length = 149380

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 96    atgagccaggggcagcagcggaggccgtcgtccgac 131
             |||||||||||||||| | |||||||| || |||||
Sbjct: 27710 atgagccaggggcagccgaggaggccgccgcccgac 27745
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 143     gggcggtggcggcgggcagg 162
               ||||||||||||||||||||
Sbjct: 4123595 gggcggtggcggcgggcagg 4123614



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    ggcggtggcggcgggcaggg 163
              ||||||||||||||||||||
Sbjct: 473871 ggcggtggcggcgggcaggg 473890
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>dbj|AK142034.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched
            library, clone:D230009L10 product:forkhead box D1, full
            insert sequence
          Length = 2839

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 138  caggcgggcggtggcggcgg 157
            ||||||||||||||||||||
Sbjct: 1185 caggcgggcggtggcggcgg 1166
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>dbj|AK132390.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:4122401E09 product:forkhead box D1, full
            insert sequence
          Length = 2445

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 138  caggcgggcggtggcggcgg 157
            ||||||||||||||||||||
Sbjct: 1181 caggcgggcggtggcggcgg 1162
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>gb|AC004873.3| Homo sapiens PAC clone RP4-742P4 from 1, complete sequence
          Length = 131329

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   ggcgggcggtggcggcgggc 159
             ||||||||||||||||||||
Sbjct: 12707 ggcgggcggtggcggcgggc 12726
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>dbj|AK164408.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched
            library, clone:D230010K09 product:forkhead box D1, full
            insert sequence
          Length = 2461

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 138  caggcgggcggtggcggcgg 157
            ||||||||||||||||||||
Sbjct: 1185 caggcgggcggtggcggcgg 1166
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 145     gcggtggcggcgggcagggc 164
               ||||||||||||||||||||
Sbjct: 3584633 gcggtggcggcgggcagggc 3584614
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>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII,
              complete sequence
          Length = 1476513

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 135    gcccaggcgggcggtggcgg 154
              ||||||||||||||||||||
Sbjct: 219802 gcccaggcgggcggtggcgg 219821
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 143     gggcggtggcggcgggcagggcca 166
               |||||||||||||| |||||||||
Sbjct: 3975343 gggcggtggcggcgcgcagggcca 3975320



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 140     ggcgggcggtggcggcgggc 159
               ||||||||||||||||||||
Sbjct: 3695445 ggcgggcggtggcggcgggc 3695426
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 138      caggcgggcggtggcggcgggcag 161
                ||||||||||| ||||||||||||
Sbjct: 14379021 caggcgggcggcggcggcgggcag 14378998
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 96       atgagccaggggcagcagcggaggccgtcgtccgac 131
                |||||||||||||||| | |||||||| || |||||
Sbjct: 30540727 atgagccaggggcagccgaggaggccgccgcccgac 30540692
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 139      aggcgggcggtggcggcggg 158
                ||||||||||||||||||||
Sbjct: 30063757 aggcgggcggtggcggcggg 30063738



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 140     ggcgggcggtggcggcgggc 159
               ||||||||||||||||||||
Sbjct: 4240480 ggcgggcggtggcggcgggc 4240461
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>gb|AC079296.5| Homo sapiens chromosome 11, clone RP11-467K18, complete sequence
          Length = 194686

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 163    gccaggggcagggaggaggc 182
              ||||||||||||||||||||
Sbjct: 104411 gccaggggcagggaggaggc 104392
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>gb|AC078797.20| Homo sapiens 3 BAC RP11-125E8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166704

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   ggcggtggcggcgggcaggg 163
             ||||||||||||||||||||
Sbjct: 56472 ggcggtggcggcgggcaggg 56491
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>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0685G12
          Length = 149155

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   aggcgggcggtggcggcggg 158
             ||||||||||||||||||||
Sbjct: 43354 aggcgggcggtggcggcggg 43335
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>dbj|AP004838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0504A05
          Length = 148360

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 140   ggcgggcggtggcggcgggc 159
             ||||||||||||||||||||
Sbjct: 57294 ggcgggcggtggcggcgggc 57275
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>emb|AL670413.19| Mouse DNA sequence from clone RP23-298E4 on chromosome 4, complete
             sequence
          Length = 243792

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 159   cagggccaggggcagggaggaggc 182
             ||||||||||| ||||||||||||
Sbjct: 99563 cagggccagggtcagggaggaggc 99586
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>ref|NM_211469.1| Eremothecium gossypii AGL260Wp (AGL260W), mRNA
          Length = 1542

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 135 gcccaggcgggcggtggcgg 154
           ||||||||||||||||||||
Sbjct: 129 gcccaggcgggcggtggcgg 148
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>emb|CT737399.2| Pan troglodytes chromosome X clone CH251-213G08 map Xq28, complete
              sequence
          Length = 144757

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    ggccaggggcagggaggagg 181
              ||||||||||||||||||||
Sbjct: 141901 ggccaggggcagggaggagg 141920
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>gb|L38607.1|MUSBF2TF Mus musculus (clones 1 and 5) transcription factor (BF-2) mRNA,
            complete cds
          Length = 2437

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 138  caggcgggcggtggcggcgg 157
            ||||||||||||||||||||
Sbjct: 1171 caggcgggcggtggcggcgg 1152
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 150      ggcggcgggcagggccaggg 169
                ||||||||||||||||||||
Sbjct: 15610067 ggcggcgggcagggccaggg 15610048



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 138      caggcgggcggtggcggcgggcag 161
                ||||||||||| ||||||||||||
Sbjct: 14461023 caggcgggcggcggcggcgggcag 14461000
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 143     gggcggtggcggcgggcagggcca 166
               |||||||||||||| |||||||||
Sbjct: 3975319 gggcggtggcggcgcgcagggcca 3975296



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 140     ggcgggcggtggcggcgggc 159
               ||||||||||||||||||||
Sbjct: 3695419 ggcgggcggtggcggcgggc 3695400
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>emb|AL713933.6|CNS07YPE Oryza sativa chromosome 12, . BAC OJ1041_D02 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 104421

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   ggcgggcggtggcggcgggc 159
             ||||||||||||||||||||
Sbjct: 54228 ggcgggcggtggcggcgggc 54247
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>emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb0028H07 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 132682

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 143   gggcggtggcggcgggcagggcca 166
             |||||||||||||| |||||||||
Sbjct: 11753 gggcggtggcggcgcgcagggcca 11730
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>emb|AL732376.2|CNS08C8Z Oryza sativa chromosome 12, . BAC OSJNBa0086B10 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 152090

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 143    gggcggtggcggcgggcagggcca 166
              |||||||||||||| |||||||||
Sbjct: 137319 gggcggtggcggcgcgcagggcca 137296
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>gb|AC130213.3| Mus musculus BAC clone RP24-68J20 from 8, complete sequence
          Length = 188287

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 156    gggcagggccaggggcaggg 175
              ||||||||||||||||||||
Sbjct: 122285 gggcagggccaggggcaggg 122266



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 156    gggcagggccaggggcaggg 175
              ||||||||||||||||||||
Sbjct: 122273 gggcagggccaggggcaggg 122254
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>ref|NG_000002.1| Homo sapiens immunoglobulin lambda locus (IGL@) on chromosome 22
          Length = 909203

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 156    gggcagggccaggggcaggg 175
              ||||||||||||||||||||
Sbjct: 271261 gggcagggccaggggcaggg 271280



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 156    gggcagggccaggggcaggg 175
              ||||||||||||||||||||
Sbjct: 271249 gggcagggccaggggcaggg 271268
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>emb|AL034384.1|HSMTM0 Human chromosome Xq28, cosmid clones 7H3, 14D7, C1230, 11E7, F1096,
             A12197, 12G8, A09100; complete sequence bases 1..217657
          Length = 217657

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   ggccaggggcagggaggagg 181
             ||||||||||||||||||||
Sbjct: 55189 ggccaggggcagggaggagg 55208
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>dbj|D87003.1| Homo sapiens immunoglobulin lambda gene locus DNA, clone:2H8
          Length = 43742

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   gggcagggccaggggcaggg 175
             ||||||||||||||||||||
Sbjct: 31628 gggcagggccaggggcaggg 31647



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   gggcagggccaggggcaggg 175
             ||||||||||||||||||||
Sbjct: 31616 gggcagggccaggggcaggg 31635


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,408,655
Number of Sequences: 3902068
Number of extensions: 1408655
Number of successful extensions: 152620
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 149832
Number of HSP's gapped (non-prelim): 2788
length of query: 219
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 197
effective length of database: 17,147,199,772
effective search space: 3377998355084
effective search space used: 3377998355084
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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