ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast56h09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469680.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1263 Score = 311 bits (157), Expect = 1e-81 Identities = 169/173 (97%) Strand = Plus / Plus Query: 223 ggagctggatcctgttcgacgcggcgggggaggagcgggagctcgacgccgacaagtacg 282 ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct: 86 ggagctggatcctgttcgacgcggcgggggaggagcgggtgctggacgccgacaagtacg 145 Query: 283 ccatcatgcaccgcgtcgacatcaacgcgcgcgacctgcgcatcctcgacccgctgctct 342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 146 ccatcatgcaccgcgtcgacatcaacgcgcgcgacctgcgcatcctcgacccgctgctct 205 Query: 343 cctacccctccaccatcctcggccgcgagcgcgccatcgtgctcaatctcgag 395 ||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 206 cctacccatccaccatcctcggccgcgagcgcgccatcgtcctcaatctcgag 258
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 311 bits (157), Expect = 1e-81 Identities = 169/173 (97%) Strand = Plus / Minus Query: 223 ggagctggatcctgttcgacgcggcgggggaggagcgggagctcgacgccgacaagtacg 282 ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct: 30166243 ggagctggatcctgttcgacgcggcgggggaggagcgggtgctggacgccgacaagtacg 30166184 Query: 283 ccatcatgcaccgcgtcgacatcaacgcgcgcgacctgcgcatcctcgacccgctgctct 342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 30166183 ccatcatgcaccgcgtcgacatcaacgcgcgcgacctgcgcatcctcgacccgctgctct 30166124 Query: 343 cctacccctccaccatcctcggccgcgagcgcgccatcgtgctcaatctcgag 395 ||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 30166123 cctacccatccaccatcctcggccgcgagcgcgccatcgtcctcaatctcgag 30166071 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 279 tacgccatcatgcaccgcgtcgac 302 |||||||||||||||||| ||||| Sbjct: 30713057 tacgccatcatgcaccgcatcgac 30713080
>gb|AC096855.5| Oryza sativa chromosome 3 BAC OJ1365_D05 genomic sequence, complete sequence Length = 163972 Score = 311 bits (157), Expect = 1e-81 Identities = 169/173 (97%) Strand = Plus / Plus Query: 223 ggagctggatcctgttcgacgcggcgggggaggagcgggagctcgacgccgacaagtacg 282 ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct: 57652 ggagctggatcctgttcgacgcggcgggggaggagcgggtgctggacgccgacaagtacg 57711 Query: 283 ccatcatgcaccgcgtcgacatcaacgcgcgcgacctgcgcatcctcgacccgctgctct 342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 57712 ccatcatgcaccgcgtcgacatcaacgcgcgcgacctgcgcatcctcgacccgctgctct 57771 Query: 343 cctacccctccaccatcctcggccgcgagcgcgccatcgtgctcaatctcgag 395 ||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 57772 cctacccatccaccatcctcggccgcgagcgcgccatcgtcctcaatctcgag 57824
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 311 bits (157), Expect = 1e-81 Identities = 169/173 (97%) Strand = Plus / Minus Query: 223 ggagctggatcctgttcgacgcggcgggggaggagcgggagctcgacgccgacaagtacg 282 ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct: 30257665 ggagctggatcctgttcgacgcggcgggggaggagcgggtgctggacgccgacaagtacg 30257606 Query: 283 ccatcatgcaccgcgtcgacatcaacgcgcgcgacctgcgcatcctcgacccgctgctct 342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 30257605 ccatcatgcaccgcgtcgacatcaacgcgcgcgacctgcgcatcctcgacccgctgctct 30257546 Query: 343 cctacccctccaccatcctcggccgcgagcgcgccatcgtgctcaatctcgag 395 ||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 30257545 cctacccatccaccatcctcggccgcgagcgcgccatcgtcctcaatctcgag 30257493 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 279 tacgccatcatgcaccgcgtcgac 302 |||||||||||||||||| ||||| Sbjct: 30804481 tacgccatcatgcaccgcatcgac 30804504
>ref|NM_190778.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1257 Score = 79.8 bits (40), Expect = 7e-12 Identities = 52/56 (92%) Strand = Plus / Plus Query: 327 ctcgacccgctgctctcctacccctccaccatcctcggccgcgagcgcgccatcgt 382 ||||||||| | ||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 181 ctcgacccggtcctctcctacccgtccaccatcctcggccgcgaccgcgccatcgt 236
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 79.8 bits (40), Expect = 7e-12 Identities = 52/56 (92%) Strand = Plus / Plus Query: 327 ctcgacccgctgctctcctacccctccaccatcctcggccgcgagcgcgccatcgt 382 ||||||||| | ||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 37657705 ctcgacccggtcctctcctacccgtccaccatcctcggccgcgaccgcgccatcgt 37657760 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 309 gcgcgcgacctgcgcatcctcgacccgctgctctcctacccctccaccatcctcggccgc 368 |||||||||||||| | || ||||||||||| || ||||| ||||| ||||| || ||| Sbjct: 39548235 gcgcgcgacctgcgggtgctggacccgctgctgtcgtacccttccacgatcctgggtcgc 39548176 Query: 369 gagcgcgccatcgt 382 |||||||||||||| Sbjct: 39548175 gagcgcgccatcgt 39548162 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 243 gcggcgggggaggagcgggag 263 ||||||||||||||||||||| Sbjct: 40169130 gcggcgggggaggagcgggag 40169110
>dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0677H08 Length = 178830 Score = 79.8 bits (40), Expect = 7e-12 Identities = 52/56 (92%) Strand = Plus / Plus Query: 327 ctcgacccgctgctctcctacccctccaccatcctcggccgcgagcgcgccatcgt 382 ||||||||| | ||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 118179 ctcgacccggtcctctcctacccgtccaccatcctcggccgcgaccgcgccatcgt 118234
>dbj|AK073453.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041H22, full insert sequence Length = 1612 Score = 79.8 bits (40), Expect = 7e-12 Identities = 52/56 (92%) Strand = Plus / Plus Query: 327 ctcgacccgctgctctcctacccctccaccatcctcggccgcgagcgcgccatcgt 382 ||||||||| | ||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 214 ctcgacccggtcctctcctacccgtccaccatcctcggccgcgaccgcgccatcgt 269
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 312 cgcgacctgcgcatcctcgacccgctgctctcctacccctccaccatcctcggccgcgag 371 |||||||| ||| ||||||||||||| || ||||||||||||||||||||| | ||| Sbjct: 26255673 cgcgacctccgcctcctcgacccgctcttcgtctacccctccaccatcctcgggagggag 26255614 Query: 372 cgcgccatcgtgctcaatctcgagca 397 ||||||||||| |||| |||||||| Sbjct: 26255613 cgcgccatcgtcgtcaacctcgagca 26255588
>dbj|AP005453.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0453H04 Length = 175047 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 312 cgcgacctgcgcatcctcgacccgctgctctcctacccctccaccatcctcggccgcgag 371 |||||||| ||| ||||||||||||| || ||||||||||||||||||||| | ||| Sbjct: 120213 cgcgacctccgcctcctcgacccgctcttcgtctacccctccaccatcctcgggagggag 120154 Query: 372 cgcgccatcgtgctcaatctcgagca 397 ||||||||||| |||| |||||||| Sbjct: 120153 cgcgccatcgtcgtcaacctcgagca 120128
>dbj|AK099209.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059K22, full insert sequence Length = 1633 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 312 cgcgacctgcgcatcctcgacccgctgctctcctacccctccaccatcctcggccgcgag 371 |||||||| ||| ||||||||||||| || ||||||||||||||||||||| | ||| Sbjct: 398 cgcgacctccgcctcctcgacccgctcttcgtctacccctccaccatcctcgggagggag 457 Query: 372 cgcgccatcgtgctcaatctcgagca 397 ||||||||||| |||| |||||||| Sbjct: 458 cgcgccatcgtcgtcaacctcgagca 483
>dbj|AK071905.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059L22, full insert sequence Length = 1633 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 312 cgcgacctgcgcatcctcgacccgctgctctcctacccctccaccatcctcggccgcgag 371 |||||||| ||| ||||||||||||| || ||||||||||||||||||||| | ||| Sbjct: 398 cgcgacctccgcctcctcgacccgctcttcgtctacccctccaccatcctcgggagggag 457 Query: 372 cgcgccatcgtgctcaatctcgagca 397 ||||||||||| |||| |||||||| Sbjct: 458 cgcgccatcgtcgtcaacctcgagca 483
>ref|XM_473061.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1287 Score = 69.9 bits (35), Expect = 7e-09 Identities = 65/75 (86%) Strand = Plus / Plus Query: 308 cgcgcgcgacctgcgcatcctcgacccgctgctctcctacccctccaccatcctcggccg 367 |||||||||||| ||| ||||||||||||| || |||||||||| | |||||||| || Sbjct: 249 cgcgcgcgacctccgcctcctcgacccgctcttcgtctacccctccgcgatcctcgggcg 308 Query: 368 cgagcgcgccatcgt 382 |||||||||| |||| Sbjct: 309 cgagcgcgccgtcgt 323
>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02, complete sequence Length = 173171 Score = 69.9 bits (35), Expect = 7e-09 Identities = 65/75 (86%) Strand = Plus / Plus Query: 308 cgcgcgcgacctgcgcatcctcgacccgctgctctcctacccctccaccatcctcggccg 367 |||||||||||| ||| ||||||||||||| || |||||||||| | |||||||| || Sbjct: 108051 cgcgcgcgacctccgcctcctcgacccgctcttcgtctacccctccgcgatcctcgggcg 108110 Query: 368 cgagcgcgccatcgt 382 |||||||||| |||| Sbjct: 108111 cgagcgcgccgtcgt 108125
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 69.9 bits (35), Expect = 7e-09 Identities = 65/75 (86%) Strand = Plus / Plus Query: 308 cgcgcgcgacctgcgcatcctcgacccgctgctctcctacccctccaccatcctcggccg 367 |||||||||||| ||| ||||||||||||| || |||||||||| | |||||||| || Sbjct: 24987466 cgcgcgcgacctccgcctcctcgacccgctcttcgtctacccctccgcgatcctcgggcg 24987525 Query: 368 cgagcgcgccatcgt 382 |||||||||| |||| Sbjct: 24987526 cgagcgcgccgtcgt 24987540
>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete sequence Length = 148644 Score = 69.9 bits (35), Expect = 7e-09 Identities = 65/75 (86%) Strand = Plus / Plus Query: 308 cgcgcgcgacctgcgcatcctcgacccgctgctctcctacccctccaccatcctcggccg 367 |||||||||||| ||| ||||||||||||| || |||||||||| | |||||||| || Sbjct: 115467 cgcgcgcgacctccgcctcctcgacccgctcttcgtctacccctccgcgatcctcgggcg 115526 Query: 368 cgagcgcgccatcgt 382 |||||||||| |||| Sbjct: 115527 cgagcgcgccgtcgt 115541
>ref|XM_463588.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1335 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 309 gcgcgcgacctgcgcatcctcgacccgctgctctcctacccctccaccatcctcggccgc 368 |||||||||||||| | || ||||||||||| || ||||| ||||| ||||| || ||| Sbjct: 169 gcgcgcgacctgcgggtgctggacccgctgctgtcgtacccttccacgatcctgggtcgc 228 Query: 369 gagcgcgccatcgt 382 |||||||||||||| Sbjct: 229 gagcgcgccatcgt 242
>dbj|AP003380.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0497A05 Length = 130919 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 309 gcgcgcgacctgcgcatcctcgacccgctgctctcctacccctccaccatcctcggccgc 368 |||||||||||||| | || ||||||||||| || ||||| ||||| ||||| || ||| Sbjct: 102677 gcgcgcgacctgcgggtgctggacccgctgctgtcgtacccttccacgatcctgggtcgc 102618 Query: 369 gagcgcgccatcgt 382 |||||||||||||| Sbjct: 102617 gagcgcgccatcgt 102604
>dbj|AP003416.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0456E05 Length = 173699 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 309 gcgcgcgacctgcgcatcctcgacccgctgctctcctacccctccaccatcctcggccgc 368 |||||||||||||| | || ||||||||||| || ||||| ||||| ||||| || ||| Sbjct: 29191 gcgcgcgacctgcgggtgctggacccgctgctgtcgtacccttccacgatcctgggtcgc 29132 Query: 369 gagcgcgccatcgt 382 |||||||||||||| Sbjct: 29131 gagcgcgccatcgt 29118
>dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1417F08 Length = 155536 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 309 gcgcgcgacctgcgcatcctcgacccgctgctctcctacccctccaccatcctcggccgc 368 |||||||||||||| | || ||||||||||| || ||||| ||||| ||||| || ||| Sbjct: 123249 gcgcgcgacctgcgggtgctggacccgctgctgtcgtacccttccacgatcctgggtcgc 123190 Query: 369 gagcgcgccatcgt 382 |||||||||||||| Sbjct: 123189 gagcgcgccatcgt 123176
>dbj|AK120875.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027C03, full insert sequence Length = 1809 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 309 gcgcgcgacctgcgcatcctcgacccgctgctctcctacccctccaccatcctcggccgc 368 |||||||||||||| | || ||||||||||| || ||||| ||||| ||||| || ||| Sbjct: 282 gcgcgcgacctgcgggtgctggacccgctgctgtcgtacccttccacgatcctgggtcgc 341 Query: 369 gagcgcgccatcgt 382 |||||||||||||| Sbjct: 342 gagcgcgccatcgt 355
>dbj|AK099071.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013164B03, full insert sequence Length = 1504 Score = 67.9 bits (34), Expect = 3e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 312 cgcgacctgcgcatcctcgacccgctgctctcctacccctccaccatcctcggccgcgag 371 |||||||| ||| ||||||||||||| || || |||||||||||||||||| | ||| Sbjct: 326 cgcgacctccgcctcctcgacccgctcttcgtctgcccctccaccatcctcgggagggag 385 Query: 372 cgcgccatcgtgctcaatctcgagca 397 ||||||||||| |||| |||||||| Sbjct: 386 cgcgccatcgtcgtcaacctcgagca 411
>ref|NM_125852.2| Arabidopsis thaliana metal ion transporter AT5G64560 transcript variant AT5G64560.2 mRNA, complete cds Length = 1299 Score = 60.0 bits (30), Expect = 7e-06 Identities = 101/125 (80%) Strand = Plus / Plus Query: 345 tacccctccaccatcctcggccgcgagcgcgccatcgtgctcaatctcgagcatantaag 404 ||||| ||||| || || ||||| ||| | ||||| || |||||| | ||||||| ||| Sbjct: 316 tacccttccactattcttggccgagagagagccattgttctcaatttggagcatatcaag 375 Query: 405 gcgattgttacttctgaagaggttttgctcagggatccttcagacgaagatgttattcct 464 || ||| | ||||| |||||||||||||| ||||||| || || ||| |||||||||| Sbjct: 376 gctattatcacttccgaagaggttttgcttcgggatccgtctgatgaaaatgttattcca 435 Query: 465 gttgt 469 ||||| Sbjct: 436 gttgt 440
>ref|NM_180938.2| Arabidopsis thaliana metal ion transporter AT5G64560 transcript variant AT5G64560.1 mRNA, complete cds Length = 1607 Score = 60.0 bits (30), Expect = 7e-06 Identities = 101/125 (80%) Strand = Plus / Plus Query: 345 tacccctccaccatcctcggccgcgagcgcgccatcgtgctcaatctcgagcatantaag 404 ||||| ||||| || || ||||| ||| | ||||| || |||||| | ||||||| ||| Sbjct: 362 tacccttccactattcttggccgagagagagccattgttctcaatttggagcatatcaag 421 Query: 405 gcgattgttacttctgaagaggttttgctcagggatccttcagacgaagatgttattcct 464 || ||| | ||||| |||||||||||||| ||||||| || || ||| |||||||||| Sbjct: 422 gctattatcacttccgaagaggttttgcttcgggatccgtctgatgaaaatgttattcca 481 Query: 465 gttgt 469 ||||| Sbjct: 482 gttgt 486
>gb|AY096449.1| Arabidopsis thaliana unknown protein (At5g64560) mRNA, complete cds Length = 1216 Score = 60.0 bits (30), Expect = 7e-06 Identities = 101/125 (80%) Strand = Plus / Plus Query: 345 tacccctccaccatcctcggccgcgagcgcgccatcgtgctcaatctcgagcatantaag 404 ||||| ||||| || || ||||| ||| | ||||| || |||||| | ||||||| ||| Sbjct: 196 tacccttccactattcttggccgagagagagccattgttctcaatttggagcatatcaag 255 Query: 405 gcgattgttacttctgaagaggttttgctcagggatccttcagacgaagatgttattcct 464 || ||| | ||||| |||||||||||||| ||||||| || || ||| |||||||||| Sbjct: 256 gctattatcacttccgaagaggttttgcttcgggatccgtctgatgaaaatgttattcca 315 Query: 465 gttgt 469 ||||| Sbjct: 316 gttgt 320
>gb|AY065449.1| Arabidopsis thaliana unknown protein (At5g64560) mRNA, complete cds Length = 1574 Score = 60.0 bits (30), Expect = 7e-06 Identities = 101/125 (80%) Strand = Plus / Plus Query: 345 tacccctccaccatcctcggccgcgagcgcgccatcgtgctcaatctcgagcatantaag 404 ||||| ||||| || || ||||| ||| | ||||| || |||||| | ||||||| ||| Sbjct: 312 tacccttccactattcttggccgagagagagccattgttctcaatttggagcatatcaag 371 Query: 405 gcgattgttacttctgaagaggttttgctcagggatccttcagacgaagatgttattcct 464 || ||| | ||||| |||||||||||||| ||||||| || || ||| |||||||||| Sbjct: 372 gctattatcacttccgaagaggttttgcttcgggatccgtctgatgaaaatgttattcca 431 Query: 465 gttgt 469 ||||| Sbjct: 432 gttgt 436
>emb|BX830196.1|CNS0A1F4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB65ZE05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1411 Score = 60.0 bits (30), Expect = 7e-06 Identities = 101/125 (80%) Strand = Plus / Plus Query: 345 tacccctccaccatcctcggccgcgagcgcgccatcgtgctcaatctcgagcatantaag 404 ||||| ||||| || || ||||| ||| | ||||| || |||||| | ||||||| ||| Sbjct: 278 tacccttccactattcttggccgagagagagccattgttctcaatttggagcatatcaag 337 Query: 405 gcgattgttacttctgaagaggttttgctcagggatccttcagacgaagatgttattcct 464 || ||| | ||||| |||||||||||||| ||||||| || || ||| |||||||||| Sbjct: 338 gctattatcacttccgaagaggttttgcttcgggatccgtctgatgaaaatgttattcca 397 Query: 465 gttgt 469 ||||| Sbjct: 398 gttgt 402
>gb|AY084382.1| Arabidopsis thaliana clone 106187 mRNA, complete sequence Length = 1478 Score = 60.0 bits (30), Expect = 7e-06 Identities = 101/125 (80%) Strand = Plus / Plus Query: 345 tacccctccaccatcctcggccgcgagcgcgccatcgtgctcaatctcgagcatantaag 404 ||||| ||||| || || ||||| ||| | ||||| || |||||| | ||||||| ||| Sbjct: 316 tacccttccactattcttggccgagagagagccattgttctcaatttggagcatatcaag 375 Query: 405 gcgattgttacttctgaagaggttttgctcagggatccttcagacgaagatgttattcct 464 || ||| | ||||| |||||||||||||| ||||||| || || ||| |||||||||| Sbjct: 376 gctattatcacttccgaagaggttttgcttcgggatccgtctgatgaaaatgttattcca 435 Query: 465 gttgt 469 ||||| Sbjct: 436 gttgt 440
>gb|AY150287.1| Arabidopsis thaliana MRS2-2 (MRS2-2) mRNA, complete cds Length = 1226 Score = 60.0 bits (30), Expect = 7e-06 Identities = 101/125 (80%) Strand = Plus / Plus Query: 345 tacccctccaccatcctcggccgcgagcgcgccatcgtgctcaatctcgagcatantaag 404 ||||| ||||| || || ||||| ||| | ||||| || |||||| | ||||||| ||| Sbjct: 197 tacccttccactattcttggccgagagagagccattgttctcaatttggagcatatcaag 256 Query: 405 gcgattgttacttctgaagaggttttgctcagggatccttcagacgaagatgttattcct 464 || ||| | ||||| |||||||||||||| ||||||| || || ||| |||||||||| Sbjct: 257 gctattatcacttccgaagaggttttgcttcgggatccgtctgatgaaaatgttattcca 316 Query: 465 gttgt 469 ||||| Sbjct: 317 gttgt 321
>emb|AJ297817.1|ATH297817 Arabidopsis thaliana mRNA for putative magnesium transporter (mrs2-2 gene) Length = 1194 Score = 60.0 bits (30), Expect = 7e-06 Identities = 101/125 (80%) Strand = Plus / Plus Query: 345 tacccctccaccatcctcggccgcgagcgcgccatcgtgctcaatctcgagcatantaag 404 ||||| ||||| || || ||||| ||| | ||||| || |||||| | ||||||| ||| Sbjct: 211 tacccttccactattcttggccgagagagagccattgttctcaatttggagcatatcaag 270 Query: 405 gcgattgttacttctgaagaggttttgctcagggatccttcagacgaagatgttattcct 464 || ||| | ||||| |||||||||||||| ||||||| || || ||| |||||||||| Sbjct: 271 gctattatcacttccgaagaggttttgcttcgggatccgtctgatgaaaatgttattcca 330 Query: 465 gttgt 469 ||||| Sbjct: 331 gttgt 335
>emb|BX829681.1|CNS0A1CB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB2ZA11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1454 Score = 56.0 bits (28), Expect = 1e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 375 gccatcgtgctcaatctcgagcatantaaggcgattgttacttctgaagaggttttgctc 434 ||||| || |||||| | ||||||| ||||| ||| | ||||| |||||||||||||| Sbjct: 392 gccattgttctcaatttggagcatatcaaggctattatcacttccgaagaggttttgctt 451 Query: 435 agggatccttcagacgaagatgttattcctgttgt 469 ||||||| || || ||| |||||||||| ||||| Sbjct: 452 cgggatccgtctgatgaaaatgttattccagttgt 486
>gb|AC140300.3| Mus musculus BAC clone RP23-373O10 from chromosome 17, complete sequence Length = 189769 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 241 acgcggcgggggaggagcggga 262 |||||||||||||||||||||| Sbjct: 112648 acgcggcgggggaggagcggga 112669
>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16 Length = 348580 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 358 tcctcggccgcgagcgcgccatcgtg 383 |||||||||||||||||| ||||||| Sbjct: 128952 tcctcggccgcgagcgcggcatcgtg 128927
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 357 atcctcggccgcgagcgcgccatcgt 382 |||||||||||||| ||||||||||| Sbjct: 8374931 atcctcggccgcgaccgcgccatcgt 8374956
>ref|XM_512685.1| PREDICTED: Pan troglodytes LOC456058 (LOC456058), mRNA Length = 1197 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 255 gagcgggagctcgacgccgac 275 ||||||||||||||||||||| Sbjct: 157 gagcgggagctcgacgccgac 177
>ref|XM_463629.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1206 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 243 gcggcgggggaggagcgggag 263 ||||||||||||||||||||| Sbjct: 130 gcggcgggggaggagcgggag 110
>ref|NM_007040.2| Homo sapiens heterogeneous nuclear ribonucleoprotein U-like 1 (HNRPUL1), transcript variant 1, mRNA Length = 3872 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 255 gagcgggagctcgacgccgac 275 ||||||||||||||||||||| Sbjct: 306 gagcgggagctcgacgccgac 326
>ref|NM_144734.1| Homo sapiens heterogeneous nuclear ribonucleoprotein U-like 1 (HNRPUL1), transcript variant 3, mRNA Length = 1800 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 255 gagcgggagctcgacgccgac 275 ||||||||||||||||||||| Sbjct: 306 gagcgggagctcgacgccgac 326
>ref|NM_144733.1| Homo sapiens heterogeneous nuclear ribonucleoprotein U-like 1 (HNRPUL1), transcript variant 2, mRNA Length = 3716 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 255 gagcgggagctcgacgccgac 275 ||||||||||||||||||||| Sbjct: 306 gagcgggagctcgacgccgac 326
>ref|XM_364989.1| Magnaporthe grisea 70-15 hypothetical protein (MG09834.4) partial mRNA Length = 2361 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 295 gcgtcgacatcaacgcgcgcg 315 ||||||||||||||||||||| Sbjct: 749 gcgtcgacatcaacgcgcgcg 769
>gb|BC004242.1| Homo sapiens heterogeneous nuclear ribonucleoprotein U-like 1, transcript variant 3, mRNA (cDNA clone IMAGE:3619753), complete cds Length = 1036 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 255 gagcgggagctcgacgccgac 275 ||||||||||||||||||||| Sbjct: 179 gagcgggagctcgacgccgac 199
>ref|XM_658503.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5991.2), mRNA Length = 3534 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 30 ggggagcgccgcgcgcggtacaagtagca 58 ||||||| |||||||||||| |||||||| Sbjct: 609 ggggagcaccgcgcgcggtaaaagtagca 637
>gb|BC009988.2| Homo sapiens heterogeneous nuclear ribonucleoprotein U-like 1, mRNA (cDNA clone MGC:16706 IMAGE:4127873), complete cds Length = 3039 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 255 gagcgggagctcgacgccgac 275 ||||||||||||||||||||| Sbjct: 215 gagcgggagctcgacgccgac 235
>gb|BC014232.2| Homo sapiens heterogeneous nuclear ribonucleoprotein U-like 1, mRNA (cDNA clone MGC:20910 IMAGE:4558792), complete cds Length = 3013 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 255 gagcgggagctcgacgccgac 275 ||||||||||||||||||||| Sbjct: 190 gagcgggagctcgacgccgac 210
>emb|AL355297.20| Human DNA sequence from clone RP11-230C9 on chromosome 6 Contains the gene for DAN15 protein, a H3 histone, family 3A (H3F3A) (H3F3, H3.3A) pseudogene, the 5' end of the gene for BRG1-binding protein ELD/OSA1 (p250R KIAA1235) and four CpG islands, complete sequence Length = 169218 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 241 acgcggcgggggaggagcggg 261 ||||||||||||||||||||| Sbjct: 62088 acgcggcgggggaggagcggg 62108
>gb|AF478459.1| Cellulomonas fimi family 20 N-acetyl-beta-hexosaminidase (hex20A) gene, complete cds Length = 2161 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 290 gcaccgcgtcgacatcaacgcgcgc 314 |||||||||||||||| |||||||| Sbjct: 358 gcaccgcgtcgacatcgacgcgcgc 382
>gb|AE005941.1| Caulobacter crescentus CB15 section 267 of 359 of the complete genome Length = 11811 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 364 gccgcgagcgcgccatcgtgctcaa 388 |||||||| |||||||||||||||| Sbjct: 10668 gccgcgagagcgccatcgtgctcaa 10644
>emb|CR594584.1| full-length cDNA clone CS0DM012YH08 of Fetal liver of Homo sapiens (human) Length = 1700 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 255 gagcgggagctcgacgccgac 275 ||||||||||||||||||||| Sbjct: 226 gagcgggagctcgacgccgac 246
>gb|AE012426.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 334 of 460 of the complete genome Length = 10029 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 319 tgcgcatcctcgacccgctgc 339 ||||||||||||||||||||| Sbjct: 5026 tgcgcatcctcgacccgctgc 5006
>dbj|AK022863.1| Homo sapiens cDNA FLJ12801 fis, clone NT2RP2002099, highly similar to Homo sapiens mRNA for E1B-55kDa-associated protein Length = 3514 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 255 gagcgggagctcgacgccgac 275 ||||||||||||||||||||| Sbjct: 265 gagcgggagctcgacgccgac 285
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 319 tgcgcatcctcgacccgctgc 339 ||||||||||||||||||||| Sbjct: 1264072 tgcgcatcctcgacccgctgc 1264092
>gb|AC011510.7|AC011510 Homo sapiens chromosome 19 clone CTD-2195B23, complete sequence Length = 129402 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 255 gagcgggagctcgacgccgac 275 ||||||||||||||||||||| Sbjct: 93187 gagcgggagctcgacgccgac 93207
>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0678F11 Length = 154292 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 243 gcggcgggggaggagcgggag 263 ||||||||||||||||||||| Sbjct: 112214 gcggcgggggaggagcgggag 112194
>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1793G04 Length = 156714 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 243 gcggcgggggaggagcgggag 263 ||||||||||||||||||||| Sbjct: 34908 gcggcgggggaggagcgggag 34888
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 309 gcgcgcgacctgcgcatcctc 329 ||||||||||||||||||||| Sbjct: 8259169 gcgcgcgacctgcgcatcctc 8259189 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 gcggggcgccgccggagatg 134 |||||||||||||||||||| Sbjct: 7306253 gcggggcgccgccggagatg 7306272
>gb|BC002564.2| Homo sapiens heterogeneous nuclear ribonucleoprotein U-like 1, transcript variant 1, mRNA (cDNA clone MGC:1974 IMAGE:3139049), complete cds Length = 3149 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 255 gagcgggagctcgacgccgac 275 ||||||||||||||||||||| Sbjct: 203 gagcgggagctcgacgccgac 223
>gb|BC027713.2| Homo sapiens heterogeneous nuclear ribonucleoprotein U-like 1, transcript variant 2, mRNA (cDNA clone MGC:16645 IMAGE:4123077), complete cds Length = 2947 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 255 gagcgggagctcgacgccgac 275 ||||||||||||||||||||| Sbjct: 186 gagcgggagctcgacgccgac 206
>dbj|AP002992.4| Homo sapiens genomic DNA, chromosome 11 clone:CTD-2655K5, complete sequence Length = 191589 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 243 gcggcgggggaggagcgggag 263 ||||||||||||||||||||| Sbjct: 184701 gcggcgggggaggagcgggag 184681
>dbj|AP002813.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-856M9, complete sequence Length = 187516 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 243 gcggcgggggaggagcgggag 263 ||||||||||||||||||||| Sbjct: 122455 gcggcgggggaggagcgggag 122435
>emb|AJ007509.1|HSA7509 Homo sapiens mRNA for E1B-55kDa-associated protein Length = 3513 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 255 gagcgggagctcgacgccgac 275 ||||||||||||||||||||| Sbjct: 306 gagcgggagctcgacgccgac 326
>ref|XM_469781.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3681 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 279 tacgccatcatgcaccgcgtcgac 302 |||||||||||||||||| ||||| Sbjct: 499 tacgccatcatgcaccgcatcgac 522
>gb|AF377947.3| Oryza sativa (japonica cultivar-group) chromosome 3, BAC clone OSJNBa0032E21, complete sequence Length = 137580 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 tacgccatcatgcaccgcgtcgac 302 |||||||||||||||||| ||||| Sbjct: 90726 tacgccatcatgcaccgcatcgac 90703
>gb|AC006012.2| Homo sapiens PAC clone RP5-942I16 from 7, complete sequence Length = 121598 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 cgcggcgggggaggagcgggagct 265 ||||| |||||||||||||||||| Sbjct: 90755 cgcggagggggaggagcgggagct 90732
>gb|AC092556.8| Oryza sativa chromosome 3 BAC OSJNBa0047E24 genomic sequence, complete sequence Length = 157970 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 tacgccatcatgcaccgcgtcgac 302 |||||||||||||||||| ||||| Sbjct: 49333 tacgccatcatgcaccgcatcgac 49310
>gb|AF002196.1| Caenorhabditis elegans cosmid C09D4, complete sequence Length = 26396 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 tgttacttctgaagaggttt 429 |||||||||||||||||||| Sbjct: 3543 tgttacttctgaagaggttt 3524
>gb|AC135225.4| Oryza sativa chromosome 3 BAC OJ1112_G08 genomic sequence, complete sequence Length = 128294 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 279 tacgccatcatgcaccgcgtcgac 302 |||||||||||||||||| ||||| Sbjct: 21758 tacgccatcatgcaccgcatcgac 21781
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 tcctcgacccgctgctctcc 344 |||||||||||||||||||| Sbjct: 2720870 tcctcgacccgctgctctcc 2720889
>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29 Length = 321250 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 gcggggcgccgccggagatg 134 |||||||||||||||||||| Sbjct: 189765 gcggggcgccgccggagatg 189746
>dbj|AB018442.1| Oryza sativa (japonica cultivar-group) mRNA for phytochrome C, complete cds Length = 3980 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 279 tacgccatcatgcaccgcgtcgac 302 |||||||||||||||||| ||||| Sbjct: 798 tacgccatcatgcaccgcatcgac 821
>gb|AC000091.1| Homo sapiens Chromosome 22q11.2 Cosmid Clone 91c In DGCR Region, complete sequence Length = 44928 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 ggcgggggaggagcgggagc 264 |||||||||||||||||||| Sbjct: 15834 ggcgggggaggagcgggagc 15815
>gb|AY518219.1| Bifidobacterium sp. BcRW10 xylulose-5-phosphate/fructose-6-phosphate phosphoketolase (xfp) gene, complete cds Length = 2506 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 tcgacgccgacaagtacgcc 284 |||||||||||||||||||| Sbjct: 2322 tcgacgccgacaagtacgcc 2341
>gb|AY518217.1| Bifidobacterium pullorum xylulose-5-phosphate/fructose-6-phosphate phosphoketolase (xfp) gene, complete cds Length = 5420 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 tcgacgccgacaagtacgcc 284 |||||||||||||||||||| Sbjct: 3244 tcgacgccgacaagtacgcc 3263
>gb|AY518215.1| Bifidobacterium longum xylulose-5-phosphate/fructose-6-phosphate phosphoketolase (xfp) gene, complete cds Length = 4962 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 tcgacgccgacaagtacgcc 284 |||||||||||||||||||| Sbjct: 3282 tcgacgccgacaagtacgcc 3301
>gb|AY518214.1| Bifidobacterium gallinarum xylulose-5-phosphate/fructose-6-phosphate phosphoketolase (xfp) gene, complete cds Length = 3429 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 tcgacgccgacaagtacgcc 284 |||||||||||||||||||| Sbjct: 3245 tcgacgccgacaagtacgcc 3264
>emb|BX832729.1|CNS0A24K Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH92ZH01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1581 Score = 40.1 bits (20), Expect = 6.4 Identities = 47/56 (83%) Strand = Plus / Plus Query: 414 acttctgaagaggttttgctcagggatccttcagacgaagatgttattcctgttgt 469 ||||| ||||||||||| || ||||||| || || || ||||||||||| ||||| Sbjct: 494 acttccgaagaggtttttcttcgggatccgtctgatgaggatgttattccagttgt 549
>gb|AF141942.1|AF141942 Oryza sativa phytochrome C (phyC) gene, complete cds Length = 6755 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 279 tacgccatcatgcaccgcgtcgac 302 |||||||||||||||||| ||||| Sbjct: 1534 tacgccatcatgcaccgcatcgac 1557
>dbj|AK059859.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-B04, full insert sequence Length = 886 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 366 cgcgagcgcgccatcgtgctcaat 389 |||||||| ||||||||||||||| Sbjct: 420 cgcgagcgagccatcgtgctcaat 397
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 316 acctgcgcatcctcgacccgctgc 339 ||||||||||||||||||| |||| Sbjct: 3419109 acctgcgcatcctcgacccactgc 3419132
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 316 acctgcgcatcctcgacccgctgc 339 ||||||||||| |||||||||||| Sbjct: 1450229 acctgcgcatcatcgacccgctgc 1450206
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 272 cgacaagtacgccatcatgcaccgcgtcgaca 303 |||||| |||||||||||||| ||||||||| Sbjct: 1726687 cgacaactacgccatcatgcagggcgtcgaca 1726718
>dbj|AP006633.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT12L11, TM0071, complete sequence Length = 69786 Score = 40.1 bits (20), Expect = 6.4 Identities = 31/35 (88%) Strand = Plus / Plus Query: 394 agcatantaaggcgattgttacttctgaagaggtt 428 |||||| |||||| ||| ||||| ||||||||||| Sbjct: 52278 agcatattaaggcaattattactgctgaagaggtt 52312
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 tcgacgccgacaagtacgcc 284 |||||||||||||||||||| Sbjct: 767670 tcgacgccgacaagtacgcc 767651 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,263,999 Number of Sequences: 3902068 Number of extensions: 2263999 Number of successful extensions: 49379 Number of sequences better than 10.0: 82 Number of HSP's better than 10.0 without gapping: 83 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48493 Number of HSP's gapped (non-prelim): 886 length of query: 472 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 450 effective length of database: 17,147,199,772 effective search space: 7716239897400 effective search space used: 7716239897400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
