>TAF1_DROME (P51123) Transcription initiation factor TFIID subunit 1 (EC|
            2.7.11.1) (Transcription initiation factor TFIID 230 kDa
            subunit) (TAFII-230) (TAFII250) (TBP-associated factor
            230 kDa) (p230)
          Length = 2129

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = +1

Query: 259  RNDNPRTTAAGFDPDA----LERAVELLRQFELRPDTDVKK 369
            +   P+ +  G D D     L+RA ELLRQF++ P+ ++KK
Sbjct: 1024 QESQPKRSVTGTDADLRRLPLQRAKELLRQFKV-PEEEIKK 1063

>Y397_MYCGE (P47637) Hypothetical protein MG397|
          Length = 566

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 9/27 (33%), Positives = 21/27 (77%)
 Frame = +1

Query: 295 DPDALERAVELLRQFELRPDTDVKKAF 375
           +  ALE+++++L+QF+++ D ++  AF
Sbjct: 61  EKQALEQSIKVLKQFQIKFDNEINSAF 87


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.131    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,298,229
Number of Sequences: 219361
Number of extensions: 199947
Number of successful extensions: 404
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)