ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast56h03 |
|---|---|
| Clone Library Name | barley_pub |
>POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Protease (EC| 3.4.22.-) (p150); RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-) (p90)] Length = 2115 Score = 33.5 bits (75), Expect = 0.24 Identities = 27/61 (44%), Positives = 30/61 (49%) Frame = -2 Query: 435 PRSMASLPCPIPLHSTCPRRSHRCLFHPRALADGRDAPPHADPARSVPGPPLHSLAAPPR 256 PR A+ P P PRR+ R H +D R PP A PAR P PP S APPR Sbjct: 713 PRQSAAASPP-PGDPPPPRRARRSQRH----SDARGTPPPA-PARDPP-PPAPSPPAPPR 765 Query: 255 A 253 A Sbjct: 766 A 766
>MIS_BOVIN (P03972) Muellerian-inhibiting factor precursor (MIS)| (Anti-Muellerian hormone) (AMH) (Mullerian-inhibiting substance) Length = 575 Score = 33.1 bits (74), Expect = 0.31 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 13/75 (17%) Frame = -2 Query: 432 RSMASLPCPIPLHSTCPRRSHRCLF-----HPRALADGRDAPPHADP--------ARSVP 292 R +L +P S+ P +H L PRA + +APP ADP R++ Sbjct: 258 RKTPALLLLLPARSSAPMPAHGRLDLVPFPQPRASPEPEEAPPSADPFLETLTRLVRALA 317 Query: 291 GPPLHSLAAPPRASV 247 GPP + A+PPR ++ Sbjct: 318 GPP--ARASPPRLAL 330
>Y498_MYCBO (P64712) Hypothetical protein Mb0498| Length = 201 Score = 32.7 bits (73), Expect = 0.41 Identities = 18/43 (41%), Positives = 24/43 (55%) Frame = -3 Query: 134 VRRRRGEAWLVGAALLTARVRFRPPAGATRKRGKACFIGLVSL 6 V R G A+L+G ALL AR +RP + G A IG+V + Sbjct: 60 VARFGGAAFLIGYALLAARNAWRPSGLVPSESGPAALIGVVQM 102
>Y488_MYCTU (P64711) Hypothetical protein Rv0488/MT0507| Length = 201 Score = 32.7 bits (73), Expect = 0.41 Identities = 18/43 (41%), Positives = 24/43 (55%) Frame = -3 Query: 134 VRRRRGEAWLVGAALLTARVRFRPPAGATRKRGKACFIGLVSL 6 V R G A+L+G ALL AR +RP + G A IG+V + Sbjct: 60 VARFGGAAFLIGYALLAARNAWRPSGLVPSESGPAALIGVVQM 102
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 31.6 bits (70), Expect = 0.91 Identities = 18/48 (37%), Positives = 21/48 (43%) Frame = -2 Query: 402 PLHSTCPRRSHRCLFHPRALADGRDAPPHADPARSVPGPPLHSLAAPP 259 P HS PRR HR R R +P P R +P PP H + P Sbjct: 294 PSHSR-PRRRHRSRSRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSP 340
>ZIM10_MOUSE (Q6P1E1) Retinoic acid-induced protein 17 (PIAS-like protein Zimp10)| Length = 1072 Score = 31.2 bits (69), Expect = 1.2 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Frame = -2 Query: 435 PRSMASLPCPI--PLHSTCPRRSHRCLFHPRALADGRDAPPHADPARSVPGPPLHSLAAP 262 P +MA+L P+ P+ T P HP ++ G P + A GPPLH AP Sbjct: 935 PNNMAALEKPLSHPMQETMPHAGSSDQPHP-SIQQGLHVPHPSSQA----GPPLHHSGAP 989 Query: 261 P 259 P Sbjct: 990 P 990
>UBP51_HUMAN (Q70EK9) Ubiquitin carboxyl-terminal hydrolase 51 (EC 3.1.2.15)| (Ubiquitin thioesterase 51) (Ubiquitin-specific-processing protease 51) (Deubiquitinating enzyme 51) Length = 711 Score = 31.2 bits (69), Expect = 1.2 Identities = 26/60 (43%), Positives = 29/60 (48%), Gaps = 8/60 (13%) Frame = -2 Query: 408 PIPLHST----CPRRSHRCLFHPRALA---DGRDAPPHADPARSVPGPPLHSLAAP-PRA 253 P+ HS+ CPRR R PRA + G APP PAR P PP AP PRA Sbjct: 88 PLRCHSSSSPVCPRRKPRPRPQPRARSRSQPGLSAPP-PPPARPPPPPPPPPPPAPRPRA 146
>ZIM10_HUMAN (Q9ULJ6) Retinoic acid-induced protein 17 (PIAS-like protein Zimp10)| Length = 1067 Score = 30.4 bits (67), Expect = 2.0 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Frame = -2 Query: 435 PRSMASLPCPI--PLHSTCPRRSHRCLFHPRALADGRDAPPHADPARSVPGPPLHSLAAP 262 P +MA+L P+ P+ T P HP ++ G P + S GPPLH AP Sbjct: 928 PNNMAALEKPLSHPMQETMPHAGSSDQPHP-SIQQGLHVPHPS----SQSGPPLHHSGAP 982 Query: 261 P 259 P Sbjct: 983 P 983
>WIRE_HUMAN (Q8TF74) WIP-related protein (WASP-interacting protein-related| protein) (WIP-and CR16-homologous protein) Length = 440 Score = 30.4 bits (67), Expect = 2.0 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 11/63 (17%) Frame = -2 Query: 414 PCPIPLHST-CPRRSHRCLFHP---RALADGRDAPPHADPARSVP-------GPPLHSLA 268 P P+P+HS+ P + P + L GR+ PP P + P GP SLA Sbjct: 190 PTPLPMHSSKAPAYNREKPLPPTPGQRLHPGREGPPAPPPVKPPPSPVNIRTGPSGQSLA 249 Query: 267 APP 259 PP Sbjct: 250 PPP 252
>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein| Length = 1509 Score = 29.6 bits (65), Expect = 3.5 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%) Frame = -2 Query: 438 RPRSMASLPCPIPLHSTCPRRSHRCLFHPRALADGRDAPPHA-DPARSVPG---PPLHSL 271 RP+S++ P PLH P ++ L + + PP A +PA + PG PPL Sbjct: 755 RPQSVSRPPSEPPLHPCPPPQAPPTLPGIFVIQNQLGVPPPASNPAPTAPGPPQPPLRPQ 814 Query: 270 AAPP 259 + PP Sbjct: 815 SQPP 818
>NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Silencing| mediator of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated corepressor) (T3 receptor-associating factor) (TRAC) (CTG repeat p Length = 2517 Score = 29.3 bits (64), Expect = 4.5 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 9/69 (13%) Frame = -2 Query: 438 RPRSMASLPCPIPLHSTCPRRSHRCLFHPRALAD--GRDAPPHADPARSVPGPPL----- 280 +P + P P T PRR+ R P ++ G PP A P+ S P P + Sbjct: 768 KPPATLGADGPPPGPPTPPRRTSRAPIEPTPASEATGAPTPPPAPPSPSAPPPVVPKEEK 827 Query: 279 --HSLAAPP 259 + AAPP Sbjct: 828 EEETAAAPP 836
>XKR7_RAT (Q5GH56) XK-related protein 7| Length = 580 Score = 29.3 bits (64), Expect = 4.5 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Frame = -2 Query: 366 CLFHPRALADGRDAPPHADPARSVP-GPPLHSLAAPPRA 253 CL HP G AP P P GPP ++ +PPR+ Sbjct: 437 CLLHPNGPMLGPQAPGCIFPEAPGPCGPPADAITSPPRS 475
>XKR7_MOUSE (Q5GH64) XK-related protein 7| Length = 580 Score = 29.3 bits (64), Expect = 4.5 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Frame = -2 Query: 366 CLFHPRALADGRDAPPHADPARSVP-GPPLHSLAAPPRA 253 CL HP G AP P P GPP ++ +PPR+ Sbjct: 437 CLLHPNGPMLGPQAPGCIFPEAPGPCGPPADAITSPPRS 475
>TNR1A_BOVIN (O19131) Tumor necrosis factor receptor superfamily member 1A| precursor (p60) (TNF-R1) (TNF-RI) (TNFR-I) (p55) Length = 471 Score = 29.3 bits (64), Expect = 4.5 Identities = 16/55 (29%), Positives = 24/55 (43%) Frame = -2 Query: 423 ASLPCPIPLHSTCPRRSHRCLFHPRALADGRDAPPHADPARSVPGPPLHSLAAPP 259 +S P IP + +C R + + P + APPH +PGPP + P Sbjct: 280 SSSPVSIPPYISCDRSNFGAVASPSS----ETAPPHLKAGPILPGPPASTHLCTP 330
>DOT1L_DROME (Q8INR6) Histone-lysine N-methyltransferase, H3 lysine-79 specific| (EC 2.1.1.43) (Histone H3-K79 methyltransferase) (H3-K79-HMTase) (Protein grappa) (DOT1-like protein) (dDOT1L) Length = 1848 Score = 29.3 bits (64), Expect = 4.5 Identities = 19/56 (33%), Positives = 29/56 (51%) Frame = -2 Query: 438 RPRSMASLPCPIPLHSTCPRRSHRCLFHPRALADGRDAPPHADPARSVPGPPLHSL 271 R +++ S P P PLHS P+RS + HP +PA+S+P LH++ Sbjct: 1040 RSKAVESSPSPSPLHSPAPKRSKQ---HPAGA---------INPAQSLPN-NLHNI 1082
>LEM2_CAEEL (Q9XTB5) LEM protein 2 (Ce-MAN1) (MAN1 homolog)| Length = 500 Score = 28.9 bits (63), Expect = 5.9 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -3 Query: 398 STPRALADLTDAYSTHAPSRTGATPRRTQI 309 S P + D T ++ST R GATP R I Sbjct: 197 SVPGLITDFTPSFSTFGSDRPGATPPRKSI 226
>JUN_PIG (P56432) Transcription factor AP-1 (Activator protein 1) (AP1)| (Proto-oncogene c-jun) (V-jun avian sarcoma virus 17 oncogene homolog) Length = 331 Score = 28.9 bits (63), Expect = 5.9 Identities = 15/48 (31%), Positives = 22/48 (45%) Frame = -2 Query: 399 LHSTCPRRSHRCLFHPRALADGRDAPPHADPARSVPGPPLHSLAAPPR 256 LHS P ++ F+P AL+ G AP + + P P PP+ Sbjct: 163 LHSEPPVYANLSNFNPGALSSGGGAPSYGAAGLAFPAQPQQQQQQPPQ 210
>STP2_MOUSE (P11378) Nuclear transition protein 2 (TP-2) (TP2)| Length = 117 Score = 28.9 bits (63), Expect = 5.9 Identities = 21/63 (33%), Positives = 26/63 (41%) Frame = -2 Query: 438 RPRSMASLPCPIPLHSTCPRRSHRCLFHPRALADGRDAPPHADPARSVPGPPLHSLAAPP 259 RP+S S C TC SH C +A G + P P P P +HS +P Sbjct: 20 RPQSHTSNQCN---QCTC---SHHCRSCSQAGHAGSSSSPSPGPPMKHPKPSVHSRHSPA 73 Query: 258 RAS 250 R S Sbjct: 74 RPS 76
>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 28.9 bits (63), Expect = 5.9 Identities = 28/83 (33%), Positives = 30/83 (36%), Gaps = 22/83 (26%) Frame = -2 Query: 435 PRSMASLPCPIPLHSTCPRRSHRCLF-------HPRALADGRDAPP-------------- 319 PR A CP P H PR SHR H RA A G D PP Sbjct: 1208 PRRRARCGCPRP-HPHRPRASHRAPAAAPHHHRHRRA-AGGWDFPPPAPTSRSLEDLSSC 1265 Query: 318 -HADPARSVPGPPLHSLAAPPRA 253 A P R + GP H+ P A Sbjct: 1266 PRAAPTRRLTGPSRHARRCPHAA 1288
>NETR_TRAPH (Q5G266) Neurotrypsin precursor (EC 3.4.21.-)| Length = 875 Score = 28.9 bits (63), Expect = 5.9 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -2 Query: 324 PPHADPARSVPGPPLHSLAAPPRA 253 P H P R+ P PPL + PPRA Sbjct: 48 PTHQRPPRTRPPPPLPRFSRPPRA 71
>WEE1A_XENLA (P47817) Wee1-like protein kinase (EC 2.7.10.2)| Length = 555 Score = 28.5 bits (62), Expect = 7.7 Identities = 15/45 (33%), Positives = 20/45 (44%) Frame = -2 Query: 411 CPIPLHSTCPRRSHRCLFHPRALADGRDAPPHADPARSVPGPPLH 277 CP P+ P+R+ R L + L+ D P PG PLH Sbjct: 48 CPFPI---TPQRNERELSPTQELSPSSDYSPDPSVGAECPGTPLH 89
>MUCSM_CANFA (P83762) Submaxillary mucin (CSM) (Fragment)| Length = 89 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = +2 Query: 284 GGPGTLRAGSACGGASRPSARARG 355 GGPG G GG P+A ARG Sbjct: 9 GGPGFTSPGRVAGGTGSPTASARG 32 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,313,795 Number of Sequences: 219361 Number of extensions: 768615 Number of successful extensions: 4169 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3643 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4145 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
