>COL5_ARATH (Q9FHH8) Zinc finger protein CONSTANS-LIKE 5|
          Length = 355

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 26/60 (43%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +1

Query: 220 AYLCAGCDAG-HARAGHERVWVCEVCELXXXXXXXXXXXXXXXXXXXXXIHHANPLARRH 396
           A+LC  CD   H+   HERVWVCEVCE                      IH ANPLA RH
Sbjct: 39  AFLCIACDTRIHSFTRHERVWVCEVCEQAPAAVTCKADAAALCVSCDADIHSANPLASRH 98

>COL3_ARATH (Q9SK53) Zinc finger protein CONSTANS-LIKE 3|
          Length = 294

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 25/64 (39%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = +1

Query: 220 AYLCAGCD-----AGHARAGHERVWVCEVCELXXXXXXXXXXXXXXXXXXXXXIHHANPL 384
           A+LC  CD     A    + HERVW+CEVCE                      IH ANPL
Sbjct: 25  AFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPL 84

Query: 385 ARRH 396
           +RRH
Sbjct: 85  SRRH 88

>COL4_ARATH (Q940T9) Zinc finger protein CONSTANS-LIKE 4|
          Length = 362

 Score = 48.1 bits (113), Expect = 5e-06
 Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
 Frame = +1

Query: 220 AYLCAGCD-----AGHARAGHERVWVCEVCELXXXXXXXXXXXXXXXXXXXXXIHHANPL 384
           A+LC  CD     A    + H RVW+CEVCE                      IH ANPL
Sbjct: 23  AFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPL 82

Query: 385 ARRH 396
           ARRH
Sbjct: 83  ARRH 86

>COL1_ARATH (O50055) Zinc finger protein CONSTANS-LIKE 1|
          Length = 355

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 30/81 (37%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
 Frame = +1

Query: 181 CRTCXXXXXX----XXXAYLCAGCDAG-HAR----AGHERVWVCEVCELXXXXXXXXXXX 333
           C TC             AYLC+ CDA  HA     + HERV VC+ CE            
Sbjct: 12  CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKADA 71

Query: 334 XXXXXXXXXXIHHANPLARRH 396
                     IH ANPLARRH
Sbjct: 72  ASLCTTCDSEIHSANPLARRH 92

>COL2_ARATH (Q96502) Zinc finger protein CONSTANS-LIKE 2|
          Length = 347

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 28/81 (34%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
 Frame = +1

Query: 181 CRTCXXXXXX----XXXAYLCAGCDA-----GHARAGHERVWVCEVCELXXXXXXXXXXX 333
           C TC             AYLC  CDA         + HERV VC+ CE            
Sbjct: 16  CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLCKADA 75

Query: 334 XXXXXXXXXXIHHANPLARRH 396
                     IH ANPLARRH
Sbjct: 76  ASLCTACDAEIHSANPLARRH 96

>CONS_ARATH (Q39057) Zinc finger protein CONSTANS|
          Length = 373

 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 27/81 (33%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
 Frame = +1

Query: 181 CRTCXXXXXX----XXXAYLCAGCDA-----GHARAGHERVWVCEVCELXXXXXXXXXXX 333
           C TC             AYLC  CDA         + H+RV VCE CE            
Sbjct: 20  CDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCERAPAAFLCEADD 79

Query: 334 XXXXXXXXXXIHHANPLARRH 396
                     +H ANPLARRH
Sbjct: 80  ASLCTACDSEVHSANPLARRH 100

>VP40_BHV1C (P54817) Capsid protein P40 [Contains: Assemblin (Protease) (EC|
           3.4.21.97); Capsid assembly protein]
          Length = 621

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 263 PARACPASHPAHRYAPSPPPLRPSH 189
           P    PA  P H ++P PP   PSH
Sbjct: 463 PGEGAPAELPPHHHSPPPPHPPPSH 487

>NEB2_HUMAN (Q96SB3) Neurabin-2 (Neurabin-II) (Spinophilin) (Protein|
           phosphatase 1 regulatory subunit 9B)
          Length = 815

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -2

Query: 251 CPASH--PAHRYAPSPPPLRPSHVRQ 180
           CPA    P HR AP+ PP +P  VR+
Sbjct: 270 CPAGQQPPQHRVAPARPPPKPREVRK 295

>RNC_HUMAN (Q9NRR4) Ribonuclease III (EC 3.1.26.3) (RNase III) (Drosha) (p241)|
          Length = 1374

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 263 PARACPASHPAHRYAPSPPPLRPSHVR 183
           P R CP     H   PS P  RP ++R
Sbjct: 14  PGRGCPRGRGGHGARPSAPSFRPQNLR 40

>FYB_MOUSE (O35601) FYN-binding protein (FYN-T-binding protein) (FYB-120/130)|
           (p120/p130) (SLP-76-associated phosphoprotein)
           (SLAP-130)
          Length = 819

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 15/26 (57%), Positives = 15/26 (57%)
 Frame = -2

Query: 281 THTLSCPARACPASHPAHRYAPSPPP 204
           TH  S P    PASHPAH   PS PP
Sbjct: 386 THPASQPP--LPASHPAHPPVPSLPP 409

>Y215_ADE02 (P03291) Hypothetical protein F-215|
          Length = 215

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/31 (48%), Positives = 15/31 (48%)
 Frame = -2

Query: 290 TSQTHTLSCPARACPASHPAHRYAPSPPPLR 198
           TS   T SCP  A     P  R  PSPP LR
Sbjct: 114 TSARSTSSCPRAAPTCPCPLSRRVPSPPYLR 144

>UCP8_SCHPO (O94685) UBA domain-containing protein 8|
          Length = 884

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 263 PARACPASHPAHRYAPSPPPLRPS 192
           PA   PA  PA ++ P PPP+R S
Sbjct: 729 PAPPTPAPTPAVKHHPPPPPVRSS 752

>DNB2_ADE04 (P06500) Early E2A DNA-binding protein|
          Length = 512

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -2

Query: 245 ASHPAHRYAPSPPPL 201
           ASHP  R +PSPPPL
Sbjct: 24  ASHPPGRESPSPPPL 38

>K1543_MOUSE (Q80VC9) Protein KIAA1543|
          Length = 1252

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 263 PARACPASHPAHRYAPSPPPLRPSHVR 183
           PAR  PA+  +    PSP P  P H R
Sbjct: 757 PARRAPAARRSPGPGPSPTPRSPKHAR 783

>MUTL_TREPA (O83325) DNA mismatch repair protein mutL|
          Length = 620

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -2

Query: 248 PASHPAHRYAPSPPPLRPSHVRQCT 174
           P  H AH   PSPP +   H R CT
Sbjct: 399 PVQH-AHLLPPSPPHISCEHARDCT 422

>GPI11_MAGGR (P0C148) Glycosylphosphatidylinositol anchor biosynthesis protein|
           11
          Length = 256

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = -2

Query: 275 TLSCPARACPASHPAHRYAPSPPPLRPSHVR 183
           T S PA+A   S P     PSPPP   SH R
Sbjct: 3   TPSTPAKAMGKSLPNTVKDPSPPPKAGSHTR 33


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,605,091
Number of Sequences: 219361
Number of extensions: 290319
Number of successful extensions: 1706
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1686
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)