ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast56g11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK104836.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-C08, full insert sequence Length = 1174 Score = 210 bits (106), Expect = 3e-51 Identities = 205/238 (86%) Strand = Plus / Plus Query: 173 gccaccaaggacgccgtcctcaggcccttccgtgagaaccgtgctctcaagatcatttcg 232 |||||||||||||||||||||| | ||||||| ||||| | ||||||||||||||||| Sbjct: 191 gccaccaaggacgccgtcctcaaggccttccgcgagaagagagctctcaagatcatttca 250 Query: 233 gggctccagaatttcgacaggtccaatgttgcatctgtcgtcacggccgcagataaggga 292 ||||| ||||||||||||||| | |||||| ||||| ||| |||| |||||||||||| Sbjct: 251 gggcttcagaatttcgacaggagtagtgttgcctctgttgtctcggctgcagataaggga 310 Query: 293 ggcgctacccatgttgatatagcatgtgaccaggacttggtaaagctcgcgctggagctg 352 || || ||||||||||||||||| |||||||| ||||| |||||||| || |||||||| Sbjct: 311 ggtgccacccatgttgatatagcgtgtgaccaagacttagtaaagcttgctctggagctt 370 Query: 353 actaaccttccgatctgtgtgtcatctgtcgatccttcagcattccaatctgcggtag 410 ||| ||||||||| ||||| || || || |||||||||||||||| |||||||||| Sbjct: 371 acttcccttccgatttgtgtctcctccgtagatccttcagcattccgttctgcggtag 428
>dbj|AK103931.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E05, full insert sequence Length = 1167 Score = 210 bits (106), Expect = 3e-51 Identities = 205/238 (86%) Strand = Plus / Plus Query: 173 gccaccaaggacgccgtcctcaggcccttccgtgagaaccgtgctctcaagatcatttcg 232 |||||||||||||||||||||| | ||||||| ||||| | ||||||||||||||||| Sbjct: 171 gccaccaaggacgccgtcctcaaggccttccgcgagaagagagctctcaagatcatttca 230 Query: 233 gggctccagaatttcgacaggtccaatgttgcatctgtcgtcacggccgcagataaggga 292 ||||| ||||||||||||||| | |||||| ||||| ||| |||| |||||||||||| Sbjct: 231 gggcttcagaatttcgacaggagtagtgttgcctctgttgtctcggctgcagataaggga 290 Query: 293 ggcgctacccatgttgatatagcatgtgaccaggacttggtaaagctcgcgctggagctg 352 || || ||||||||||||||||| |||||||| ||||| |||||||| || |||||||| Sbjct: 291 ggtgccacccatgttgatatagcgtgtgaccaagacttagtaaagcttgctctggagctt 350 Query: 353 actaaccttccgatctgtgtgtcatctgtcgatccttcagcattccaatctgcggtag 410 ||| ||||||||| ||||| || || || |||||||||||||||| |||||||||| Sbjct: 351 acttcccttccgatttgtgtctcctccgtagatccttcagcattccgttctgcggtag 408
>dbj|AK068910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002B08, full insert sequence Length = 1196 Score = 210 bits (106), Expect = 3e-51 Identities = 205/238 (86%) Strand = Plus / Plus Query: 173 gccaccaaggacgccgtcctcaggcccttccgtgagaaccgtgctctcaagatcatttcg 232 |||||||||||||||||||||| | ||||||| ||||| | ||||||||||||||||| Sbjct: 200 gccaccaaggacgccgtcctcaaggccttccgcgagaagagagctctcaagatcatttca 259 Query: 233 gggctccagaatttcgacaggtccaatgttgcatctgtcgtcacggccgcagataaggga 292 ||||| ||||||||||||||| | |||||| ||||| ||| |||| |||||||||||| Sbjct: 260 gggcttcagaatttcgacaggagtagtgttgcctctgttgtctcggctgcagataaggga 319 Query: 293 ggcgctacccatgttgatatagcatgtgaccaggacttggtaaagctcgcgctggagctg 352 || || ||||||||||||||||| |||||||| ||||| |||||||| || |||||||| Sbjct: 320 ggtgccacccatgttgatatagcgtgtgaccaagacttagtaaagcttgctctggagctt 379 Query: 353 actaaccttccgatctgtgtgtcatctgtcgatccttcagcattccaatctgcggtag 410 ||| ||||||||| ||||| || || || |||||||||||||||| |||||||||| Sbjct: 380 acttcccttccgatttgtgtctcctccgtagatccttcagcattccgttctgcggtag 437
>gb|AY108970.1| Zea mays PCO099268 mRNA sequence Length = 1321 Score = 184 bits (93), Expect = 2e-43 Identities = 222/265 (83%) Strand = Plus / Plus Query: 141 tgttcgccgtccgtgcctcggcggcttctgccgccaccaaggacgccgtcctcaggccct 200 |||||||||| || |||||||| ||| ||||||| || ||| ||||| |||| | ||| Sbjct: 232 tgttcgccgtgcgcgcctcggctgctgacgccgccaacagggatgccgtgctcaaggcct 291 Query: 201 tccgtgagaaccgtgctctcaagatcatttcggggctccagaatttcgacaggtccaatg 260 |||| |||||| | ||||||||||| ||||| || || ||||| || |||||| || || Sbjct: 292 tccgcgagaacagggctctcaagataatttccggtcttcagaactttgacaggagcagtg 351 Query: 261 ttgcatctgtcgtcacggccgcagataagggaggcgctacccatgttgatatagcatgtg 320 |||||||||| ||||| || |||||||||||||| || || |||||||| |||||||||| Sbjct: 352 ttgcatctgttgtcacagctgcagataagggaggtgcaacacatgttgacatagcatgtg 411 Query: 321 accaggacttggtaaagctcgcgctggagctgactaaccttccgatctgtgtgtcatctg 380 || ||||||| |||||||| || |||| || || ||||||||||||||||| ||||||| Sbjct: 412 acaaggacttagtaaagcttgccatggatcttaccaaccttccgatctgtgtctcatctg 471 Query: 381 tcgatccttcagcattccaatctgc 405 | ||||||||||| ||||| ||||| Sbjct: 472 tagatccttcagcgttccattctgc 496 Score = 83.8 bits (42), Expect = 4e-13 Identities = 63/70 (90%) Strand = Plus / Plus Query: 44 atggcagcgccgggctccctagcacttctccaggcgccgtccttcgccgcggccaagtgc 103 ||||||||||| |||||||| |||||||||||| ||||||||||| |||||||||||| Sbjct: 126 atggcagcgccaggctccctgcgacttctccaggccccgtccttcgctgcggccaagtgc 185 Query: 104 cggccggtgg 113 | |||||||| Sbjct: 186 cagccggtgg 195
>gb|AC124143.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0053D02, complete sequence Length = 157106 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 288 agggaggcgctacccatgttgatatagcatgtgaccaggacttggtaaagctcgcgctgg 347 ||||||| || ||||||||||||||||| |||||||| ||||| |||||||| || |||| Sbjct: 140097 agggaggtgccacccatgttgatatagcgtgtgaccaagacttagtaaagcttgctctgg 140038 Query: 348 agctgactaaccttccg 364 |||| ||| ||||||| Sbjct: 140037 agcttacttcccttccg 140021 Score = 58.0 bits (29), Expect = 2e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 222 agatcatttcggggctccagaatttcgacaggtccaatgttgcatctgtcgtcacggccg 281 |||||||||| ||||| ||||||||||||||| | |||||| ||||| ||| |||| | Sbjct: 140821 agatcatttcagggcttcagaatttcgacaggagtagtgttgcctctgttgtctcggctg 140762 Query: 282 cagataagg 290 ||||||||| Sbjct: 140761 cagataagg 140753 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 173 gccaccaaggacgccgtcctcaggcccttccgtgagaaccgtgctctcaag 223 |||||||||||||||||||||| | ||||||| ||||| | ||||||||| Sbjct: 141074 gccaccaaggacgccgtcctcaaggccttccgcgagaagagagctctcaag 141024 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 383 gatccttcagcattccaatctgcggtag 410 |||||||||||||||| |||||||||| Sbjct: 139915 gatccttcagcattccgttctgcggtag 139888
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 288 agggaggcgctacccatgttgatatagcatgtgaccaggacttggtaaagctcgcgctgg 347 ||||||| || ||||||||||||||||| |||||||| ||||| |||||||| || |||| Sbjct: 27909680 agggaggtgccacccatgttgatatagcgtgtgaccaagacttagtaaagcttgctctgg 27909621 Query: 348 agctgactaaccttccg 364 |||| ||| ||||||| Sbjct: 27909620 agcttacttcccttccg 27909604 Score = 58.0 bits (29), Expect = 2e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 222 agatcatttcggggctccagaatttcgacaggtccaatgttgcatctgtcgtcacggccg 281 |||||||||| ||||| ||||||||||||||| | |||||| ||||| ||| |||| | Sbjct: 27910404 agatcatttcagggcttcagaatttcgacaggagtagtgttgcctctgttgtctcggctg 27910345 Query: 282 cagataagg 290 ||||||||| Sbjct: 27910344 cagataagg 27910336 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 173 gccaccaaggacgccgtcctcaggcccttccgtgagaaccgtgctctcaag 223 |||||||||||||||||||||| | ||||||| ||||| | ||||||||| Sbjct: 27910657 gccaccaaggacgccgtcctcaaggccttccgcgagaagagagctctcaag 27910607 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 383 gatccttcagcattccaatctgcggtag 410 |||||||||||||||| |||||||||| Sbjct: 27909498 gatccttcagcattccgttctgcggtag 27909471
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 108 cggtggccatgagccggggag 128 ||||||||||||||||||||| Sbjct: 1154047 cggtggccatgagccggggag 1154027
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 108 cggtggccatgagccggggag 128 ||||||||||||||||||||| Sbjct: 827999 cggtggccatgagccggggag 827979
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 cctcggcggcttctgccgccacca 179 ||||||||||||||||| |||||| Sbjct: 2025723 cctcggcggcttctgcctccacca 2025700
>ref|XM_752221.1| Ustilago maydis 521 hypothetical protein (UM01167.1) partial mRNA Length = 3945 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 tcagcagcaagaatggcagc 51 |||||||||||||||||||| Sbjct: 475 tcagcagcaagaatggcagc 494
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 tctccaggcgccgtccttcg 89 |||||||||||||||||||| Sbjct: 54516 tctccaggcgccgtccttcg 54497
>emb|AJ295155.1|OME295155 Oleiphilus messinensis partial alkB gene for putative alkane hydroxylase Length = 495 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 agcagcaagaatggcagcgc 53 |||||||||||||||||||| Sbjct: 329 agcagcaagaatggcagcgc 310
>gb|AF269148.1|AF269148 Bilophila wadsworthia alanine dehydrogenase gene, complete cds Length = 1310 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 170 gccgccaccaaggacgccgtcctc 193 ||||||||||||||||||| |||| Sbjct: 785 gccgccaccaaggacgccgacctc 808
>gb|AC011443.6|AC011443 Homo sapiens chromosome 19 clone CTC-218B8, complete sequence Length = 156776 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ttcagcagcaagaatggcag 50 |||||||||||||||||||| Sbjct: 96815 ttcagcagcaagaatggcag 96834
>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib Length = 2013089 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 142 gttcgccgtccgtgcctcggcggc 165 ||||| |||||||||||||||||| Sbjct: 1140191 gttcgtcgtccgtgcctcggcggc 1140168 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,445,522 Number of Sequences: 3902068 Number of extensions: 2445522 Number of successful extensions: 41119 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40988 Number of HSP's gapped (non-prelim): 131 length of query: 410 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 388 effective length of database: 17,147,199,772 effective search space: 6653113511536 effective search space used: 6653113511536 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
