>RL1_HHV2H (P28283) Neurovirulence factor RL1 (Neurovirulence factor ICP34.5)|
          Length = 261

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 21/68 (30%), Positives = 27/68 (39%)
 Frame = +1

Query: 13  RRSSQCAPPLDLPTR*YLISPRTTAGQGARYKSSCWRPPSRSTQRERERSDLS*RGWRMA 192
           RR    +PP D P      SPR        ++++       S  RER   D   R    A
Sbjct: 150 RRRPPASPPADAPRGKVCFSPRVQVRHLVAWETAARLARRGSWARERADRDRFRRRVAAA 209

Query: 193 EAVAGGCM 216
           EAV G C+
Sbjct: 210 EAVIGPCL 217

>SAM50_CAEEL (P46576) SAM50-like protein gop-3 (Gro-1 operon protein 3)|
          Length = 434

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +3

Query: 276 ALNVGLQSVDADGDGVSKQQACSRTCESDHC----TTAPFLRYGQYCGI 410
           +LN G QSV   G+ ++ Q   + T + DHC       PFL + +Y  +
Sbjct: 118 SLNAGKQSVGGRGEAINTQY--TYTVKGDHCFNISAIKPFLGWQKYSNV 164

>SECA2_MYCTU (P66785) Preprotein translocase secA 2 subunit|
          Length = 808

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 73  PRTTAGQGARYKSSCWRPPSRSTQRERERS 162
           P+TT  Q  R  S  WR    ST++ R RS
Sbjct: 32  PKTTRAQPGRLSSRFWRLLGASTEKNRSRS 61

>SECA2_MYCBO (P66786) Preprotein translocase secA 2 subunit|
          Length = 808

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 73  PRTTAGQGARYKSSCWRPPSRSTQRERERS 162
           P+TT  Q  R  S  WR    ST++ R RS
Sbjct: 32  PKTTRAQPGRLSSRFWRLLGASTEKNRSRS 61

>NARX_SHIFL (P0AFA4) Nitrate/nitrite sensor protein narX (EC 2.7.13.3)|
          Length = 598

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 131 LDRHKERERDLIFLEEDGAWQRQL 202
           LDRH+ER++ LI +EE     R+L
Sbjct: 375 LDRHQERQQQLIVMEERATIAREL 398

>NARX_ECOLI (P0AFA2) Nitrate/nitrite sensor protein narX (EC 2.7.13.3)|
          Length = 598

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 131 LDRHKERERDLIFLEEDGAWQRQL 202
           LDRH+ER++ LI +EE     R+L
Sbjct: 375 LDRHQERQQQLIVMEERATIAREL 398

>NARX_ECO57 (P0AFA3) Nitrate/nitrite sensor protein narX (EC 2.7.13.3)|
          Length = 598

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 131 LDRHKERERDLIFLEEDGAWQRQL 202
           LDRH+ER++ LI +EE     R+L
Sbjct: 375 LDRHQERQQQLIVMEERATIAREL 398

>NEOR_STRCY (P14501) Neomycin resistance protein|
          Length = 437

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = -3

Query: 376 AVVQWSDSHVRLHACCLLTPSPSASTDWRPTLRAEERGATAAQARSPTTASRRACSRRQL 197
           A+ +W D   R     L   +P     +RP   A   GATA    + +T+S    S RQ 
Sbjct: 178 ALTEWEDRWRRSGPATLARSTPG----FRPPTGARSPGATAGARATASTSSSSVRSGRQR 233

Query: 196 P 194
           P
Sbjct: 234 P 234

>UL49_EBV (P14347) Protein BFRF2|
          Length = 591

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 9/52 (17%)
 Frame = -3

Query: 334 CCLLTPSPSASTDWRPTLRAE---------ERGATAAQARSPTTASRRACSR 206
           C  L   PSA + WRP +RA          +RG+    A  P     R C R
Sbjct: 448 CQRLAEPPSARSGWRPRIRAVLPHNAAYELDRGSRLLDAIIPCLGPDRTCMR 499

>PSC_DROME (P35820) Polycomb group protein Psc (Protein posterior sex combs)|
          Length = 1601

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = -3

Query: 310 SASTDWRPTLRAEERGATAAQARSPTTASRRACS-RRQLPLPCAILFKKDQISLSLFVSI 134
           + +T   PT       A AA+A +     ++    ++QL   C+I  K +  +L+   + 
Sbjct: 79  TTTTTTPPTTTTTTTAAAAAEATTNADKMQKQQQLKQQLFAACSIKVKSEN-TLATTANA 137

Query: 133 ETAAASSWTYTARPALPSFSA 71
             AAA++ T TA PAL +  A
Sbjct: 138 ALAAATTTTTTATPALATGKA 158


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,385,088
Number of Sequences: 219361
Number of extensions: 819574
Number of successful extensions: 2763
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2761
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)