ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast56g07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB234234.1| Oryza sativa (japonica cultivar-group) OsPPCK3 mRNA for phosphoenolpyruvate carboxylase kinase, complete cds Length = 1224 Score = 327 bits (165), Expect = 1e-86 Identities = 273/309 (88%) Strand = Plus / Plus Query: 57 atgagtgaggaactcaaccgggactacgagatcggggaggaggtagggcgcggccgcttc 116 |||||||||||||| || || |||| ||||||||| |||||| | ||||||||||||||| Sbjct: 47 atgagtgaggaactgaagcgcgacttcgagatcggcgaggagattgggcgcggccgcttc 106 Query: 117 ggcgtggtccgccgctgcgcgtcccgctccaccggcgacctctacgccgtcaagtcggtc 176 ||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct: 107 ggcgtcgtccaccgctgcgcctcccgctccaccggcgaggcctacgccgtcaagtcggtc 166 Query: 177 gaccgctcgctcctcgccgacgacctggaccgcggcctggccgagctggagcccaagctg 236 |||||||| | |||| ||||||||||||||||| || |||| ||| |||||||||||| Sbjct: 167 gaccgctcccgcctctccgacgacctggaccgctcgctcgccgcgctcgagcccaagctg 226 Query: 237 gcgcagctggccgccgcgggcaaccccggcgtcgtgcaggtgcacgcggtgtacgaggac 296 || | ||| ||||||||||||||||| |||||||||||||||||||| || ||||||||| Sbjct: 227 gcccggctcgccgccgcgggcaacccgggcgtcgtgcaggtgcacgccgtctacgaggac 286 Query: 297 gaggcgtggacgcacatggtcatggacctgtgcgccgggcccgacctgctcgactgggtc 356 || | |||||||||| |||||||||||| ||| | ||||||||||| |||||||||||| Sbjct: 287 gacgactggacgcacacggtcatggacctctgcacggggcccgacctcctcgactgggtc 346 Query: 357 cgcctccgc 365 ||||||||| Sbjct: 347 cgcctccgc 355
>dbj|AK066885.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088G18, full insert sequence Length = 1224 Score = 327 bits (165), Expect = 1e-86 Identities = 273/309 (88%) Strand = Plus / Plus Query: 57 atgagtgaggaactcaaccgggactacgagatcggggaggaggtagggcgcggccgcttc 116 |||||||||||||| || || |||| ||||||||| |||||| | ||||||||||||||| Sbjct: 47 atgagtgaggaactgaagcgcgacttcgagatcggcgaggagattgggcgcggccgcttc 106 Query: 117 ggcgtggtccgccgctgcgcgtcccgctccaccggcgacctctacgccgtcaagtcggtc 176 ||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct: 107 ggcgtcgtccaccgctgcgcctcccgctccaccggcgaggcctacgccgtcaagtcggtc 166 Query: 177 gaccgctcgctcctcgccgacgacctggaccgcggcctggccgagctggagcccaagctg 236 |||||||| | |||| ||||||||||||||||| || |||| ||| |||||||||||| Sbjct: 167 gaccgctcccgcctctccgacgacctggaccgctcgctcgccgcgctcgagcccaagctg 226 Query: 237 gcgcagctggccgccgcgggcaaccccggcgtcgtgcaggtgcacgcggtgtacgaggac 296 || | ||| ||||||||||||||||| |||||||||||||||||||| || ||||||||| Sbjct: 227 gcccggctcgccgccgcgggcaacccgggcgtcgtgcaggtgcacgccgtctacgaggac 286 Query: 297 gaggcgtggacgcacatggtcatggacctgtgcgccgggcccgacctgctcgactgggtc 356 || | |||||||||| |||||||||||| ||| | ||||||||||| |||||||||||| Sbjct: 287 gacgactggacgcacacggtcatggacctctgcacggggcccgacctcctcgactgggtc 346 Query: 357 cgcctccgc 365 ||||||||| Sbjct: 347 cgcctccgc 355
>ref|XM_466833.1| Oryza sativa (japonica cultivar-group), mRNA Length = 936 Score = 325 bits (164), Expect = 6e-86 Identities = 266/300 (88%) Strand = Plus / Plus Query: 78 gactacgagatcggggaggaggtagggcgcggccgcttcggcgtggtccgccgctgcgcg 137 ||||||||||| || |||||| | ||||||||||||||||||||||||| ||||||| || Sbjct: 22 gactacgagattggcgaggagatcgggcgcggccgcttcggcgtggtccaccgctgcacg 81 Query: 138 tcccgctccaccggcgacctctacgccgtcaagtcggtcgaccgctcgctcctcgccgac 197 || ||| |||||||||| || |||||||||||| ||||||||||||| || |||||| Sbjct: 82 tcgcgcgccaccggcgaggccttcgccgtcaagtccgtcgaccgctcgcagctggccgac 141 Query: 198 gacctggaccgcggcctggccgagctggagcccaagctggcgcagctggccgccgcgggc 257 ||||| ||||| | || || ||||| |||||||||||||| |||||||||||||||||| Sbjct: 142 gacctcgaccgggagctcgcggagctcgagcccaagctggcccagctggccgccgcgggc 201 Query: 258 aaccccggcgtcgtgcaggtgcacgcggtgtacgaggacgaggcgtggacgcacatggtc 317 ||||| |||||||| ||||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 202 aacccgggcgtcgtccaggtgcacgccgtgtacgaggacgacgcgtggacgcacatggtc 261 Query: 318 atggacctgtgcgccgggcccgacctgctcgactgggtccgcctccgccagggcgcgccc 377 |||||||| ||| |||| |||||||||||||||||| |||||||||||| ||||||||| Sbjct: 262 atggacctctgctccggccccgacctgctcgactggatccgcctccgccgcggcgcgccc 321
>dbj|AB233453.1| Oryza sativa (japonica cultivar-group) OsPPCK2L mRNA for phosphoenolpyruvate carboxylase kinase, complete cds Length = 1458 Score = 325 bits (164), Expect = 6e-86 Identities = 266/300 (88%) Strand = Plus / Plus Query: 78 gactacgagatcggggaggaggtagggcgcggccgcttcggcgtggtccgccgctgcgcg 137 ||||||||||| || |||||| | ||||||||||||||||||||||||| ||||||| || Sbjct: 107 gactacgagattggcgaggagatcgggcgcggccgcttcggcgtggtccaccgctgcacg 166 Query: 138 tcccgctccaccggcgacctctacgccgtcaagtcggtcgaccgctcgctcctcgccgac 197 || ||| |||||||||| || |||||||||||| ||||||||||||| || |||||| Sbjct: 167 tcgcgcgccaccggcgaggccttcgccgtcaagtccgtcgaccgctcgcagctggccgac 226 Query: 198 gacctggaccgcggcctggccgagctggagcccaagctggcgcagctggccgccgcgggc 257 ||||| ||||| | || || ||||| |||||||||||||| |||||||||||||||||| Sbjct: 227 gacctcgaccgggagctcgcggagctcgagcccaagctggcccagctggccgccgcgggc 286 Query: 258 aaccccggcgtcgtgcaggtgcacgcggtgtacgaggacgaggcgtggacgcacatggtc 317 ||||| |||||||| ||||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 287 aacccgggcgtcgtccaggtgcacgccgtgtacgaggacgacgcgtggacgcacatggtc 346 Query: 318 atggacctgtgcgccgggcccgacctgctcgactgggtccgcctccgccagggcgcgccc 377 |||||||| ||| |||| |||||||||||||||||| |||||||||||| ||||||||| Sbjct: 347 atggacctctgctccggccccgacctgctcgactggatccgcctccgccgcggcgcgccc 406
>dbj|AB233452.1| Oryza sativa (japonica cultivar-group) OsPPCK2S mRNA for phosphoenolpyruvate carboxylase kinase, complete cds Length = 1404 Score = 325 bits (164), Expect = 6e-86 Identities = 266/300 (88%) Strand = Plus / Plus Query: 78 gactacgagatcggggaggaggtagggcgcggccgcttcggcgtggtccgccgctgcgcg 137 ||||||||||| || |||||| | ||||||||||||||||||||||||| ||||||| || Sbjct: 53 gactacgagattggcgaggagatcgggcgcggccgcttcggcgtggtccaccgctgcacg 112 Query: 138 tcccgctccaccggcgacctctacgccgtcaagtcggtcgaccgctcgctcctcgccgac 197 || ||| |||||||||| || |||||||||||| ||||||||||||| || |||||| Sbjct: 113 tcgcgcgccaccggcgaggccttcgccgtcaagtccgtcgaccgctcgcagctggccgac 172 Query: 198 gacctggaccgcggcctggccgagctggagcccaagctggcgcagctggccgccgcgggc 257 ||||| ||||| | || || ||||| |||||||||||||| |||||||||||||||||| Sbjct: 173 gacctcgaccgggagctcgcggagctcgagcccaagctggcccagctggccgccgcgggc 232 Query: 258 aaccccggcgtcgtgcaggtgcacgcggtgtacgaggacgaggcgtggacgcacatggtc 317 ||||| |||||||| ||||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 233 aacccgggcgtcgtccaggtgcacgccgtgtacgaggacgacgcgtggacgcacatggtc 292 Query: 318 atggacctgtgcgccgggcccgacctgctcgactgggtccgcctccgccagggcgcgccc 377 |||||||| ||| |||| |||||||||||||||||| |||||||||||| ||||||||| Sbjct: 293 atggacctctgctccggccccgacctgctcgactggatccgcctccgccgcggcgcgccc 352
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 325 bits (164), Expect = 6e-86 Identities = 266/300 (88%) Strand = Plus / Plus Query: 78 gactacgagatcggggaggaggtagggcgcggccgcttcggcgtggtccgccgctgcgcg 137 ||||||||||| || |||||| | ||||||||||||||||||||||||| ||||||| || Sbjct: 24953532 gactacgagattggcgaggagatcgggcgcggccgcttcggcgtggtccaccgctgcacg 24953591 Query: 138 tcccgctccaccggcgacctctacgccgtcaagtcggtcgaccgctcgctcctcgccgac 197 || ||| |||||||||| || |||||||||||| ||||||||||||| || |||||| Sbjct: 24953592 tcgcgcgccaccggcgaggccttcgccgtcaagtccgtcgaccgctcgcagctggccgac 24953651 Query: 198 gacctggaccgcggcctggccgagctggagcccaagctggcgcagctggccgccgcgggc 257 ||||| ||||| | || || ||||| |||||||||||||| |||||||||||||||||| Sbjct: 24953652 gacctcgaccgggagctcgcggagctcgagcccaagctggcccagctggccgccgcgggc 24953711 Query: 258 aaccccggcgtcgtgcaggtgcacgcggtgtacgaggacgaggcgtggacgcacatggtc 317 ||||| |||||||| ||||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 24953712 aacccgggcgtcgtccaggtgcacgccgtgtacgaggacgacgcgtggacgcacatggtc 24953771 Query: 318 atggacctgtgcgccgggcccgacctgctcgactgggtccgcctccgccagggcgcgccc 377 |||||||| ||| |||| |||||||||||||||||| |||||||||||| ||||||||| Sbjct: 24953772 atggacctctgctccggccccgacctgctcgactggatccgcctccgccgcggcgcgccc 24953831 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 102 gggcgcggccgcttcggcgtggtccgccgctgc 134 |||||||||||||||||| |||||||||||| Sbjct: 34488561 gggcgcggccgcttcggcaccgtccgccgctgc 34488529
>dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1215B07 Length = 165957 Score = 325 bits (164), Expect = 6e-86 Identities = 266/300 (88%) Strand = Plus / Plus Query: 78 gactacgagatcggggaggaggtagggcgcggccgcttcggcgtggtccgccgctgcgcg 137 ||||||||||| || |||||| | ||||||||||||||||||||||||| ||||||| || Sbjct: 114815 gactacgagattggcgaggagatcgggcgcggccgcttcggcgtggtccaccgctgcacg 114874 Query: 138 tcccgctccaccggcgacctctacgccgtcaagtcggtcgaccgctcgctcctcgccgac 197 || ||| |||||||||| || |||||||||||| ||||||||||||| || |||||| Sbjct: 114875 tcgcgcgccaccggcgaggccttcgccgtcaagtccgtcgaccgctcgcagctggccgac 114934 Query: 198 gacctggaccgcggcctggccgagctggagcccaagctggcgcagctggccgccgcgggc 257 ||||| ||||| | || || ||||| |||||||||||||| |||||||||||||||||| Sbjct: 114935 gacctcgaccgggagctcgcggagctcgagcccaagctggcccagctggccgccgcgggc 114994 Query: 258 aaccccggcgtcgtgcaggtgcacgcggtgtacgaggacgaggcgtggacgcacatggtc 317 ||||| |||||||| ||||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 114995 aacccgggcgtcgtccaggtgcacgccgtgtacgaggacgacgcgtggacgcacatggtc 115054 Query: 318 atggacctgtgcgccgggcccgacctgctcgactgggtccgcctccgccagggcgcgccc 377 |||||||| ||| |||| |||||||||||||||||| |||||||||||| ||||||||| Sbjct: 115055 atggacctctgctccggccccgacctgctcgactggatccgcctccgccgcggcgcgccc 115114
>ref|XM_473187.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 861 Score = 311 bits (157), Expect = 9e-82 Identities = 271/309 (87%) Strand = Plus / Plus Query: 57 atgagtgaggaactcaaccgggactacgagatcggggaggaggtagggcgcggccgcttc 116 |||||||||||||| || || |||| ||||||||| |||||| | ||||||||||||||| Sbjct: 1 atgagtgaggaactgaagcgcgacttcgagatcggcgaggagattgggcgcggccgcttc 60 Query: 117 ggcgtggtccgccgctgcgcgtcccgctccaccggcgacctctacgccgtcaagtcggtc 176 ||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct: 61 ggcgtcgtccaccgctgcgcctcccgctccaccggcgaggcctacgccgtcaagtcggtc 120 Query: 177 gaccgctcgctcctcgccgacgacctggaccgcggcctggccgagctggagcccaagctg 236 |||||||| | |||| ||||||||||||||||| || |||| ||| |||||||||||| Sbjct: 121 gaccgctcccgcctctccgacgacctggaccgctcgctcgccgcgctcgagcccaagctg 180 Query: 237 gcgcagctggccgccgcgggcaaccccggcgtcgtgcaggtgcacgcggtgtacgaggac 296 || | ||| ||||||||||||||||| |||||||||||||||||||| || ||||||||| Sbjct: 181 gcccggctcgccgccgcgggcaacccgggcgtcgtgcaggtgcacgccgtctacgaggac 240 Query: 297 gaggcgtggacgcacatggtcatggacctgtgcgccgggcccgacctgctcgactgggtc 356 || | |||||||||| |||||||||||| ||| | |||||||| | |||||||||||| Sbjct: 241 gacgactggacgcacacggtcatggacctctgcacgaggcccgacatcctcgactgggtc 300 Query: 357 cgcctccgc 365 ||||||||| Sbjct: 301 cgcctccgc 309
>emb|AL731616.5|OSJN00262 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073E02, complete sequence Length = 139080 Score = 311 bits (157), Expect = 9e-82 Identities = 271/309 (87%) Strand = Plus / Plus Query: 57 atgagtgaggaactcaaccgggactacgagatcggggaggaggtagggcgcggccgcttc 116 |||||||||||||| || || |||| ||||||||| |||||| | ||||||||||||||| Sbjct: 58702 atgagtgaggaactgaagcgcgacttcgagatcggcgaggagattgggcgcggccgcttc 58761 Query: 117 ggcgtggtccgccgctgcgcgtcccgctccaccggcgacctctacgccgtcaagtcggtc 176 ||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct: 58762 ggcgtcgtccaccgctgcgcctcccgctccaccggcgaggcctacgccgtcaagtcggtc 58821 Query: 177 gaccgctcgctcctcgccgacgacctggaccgcggcctggccgagctggagcccaagctg 236 |||||||| | |||| ||||||||||||||||| || |||| ||| |||||||||||| Sbjct: 58822 gaccgctcccgcctctccgacgacctggaccgctcgctcgccgcgctcgagcccaagctg 58881 Query: 237 gcgcagctggccgccgcgggcaaccccggcgtcgtgcaggtgcacgcggtgtacgaggac 296 || | ||| ||||||||||||||||| |||||||||||||||||||| || ||||||||| Sbjct: 58882 gcccggctcgccgccgcgggcaacccgggcgtcgtgcaggtgcacgccgtctacgaggac 58941 Query: 297 gaggcgtggacgcacatggtcatggacctgtgcgccgggcccgacctgctcgactgggtc 356 || | |||||||||| |||||||||||| ||| | |||||||| | |||||||||||| Sbjct: 58942 gacgactggacgcacacggtcatggacctctgcacgaggcccgacatcctcgactgggtc 59001 Query: 357 cgcctccgc 365 ||||||||| Sbjct: 59002 cgcctccgc 59010
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 311 bits (157), Expect = 9e-82 Identities = 271/309 (87%) Strand = Plus / Plus Query: 57 atgagtgaggaactcaaccgggactacgagatcggggaggaggtagggcgcggccgcttc 116 |||||||||||||| || || |||| ||||||||| |||||| | ||||||||||||||| Sbjct: 25841292 atgagtgaggaactgaagcgcgacttcgagatcggcgaggagattgggcgcggccgcttc 25841351 Query: 117 ggcgtggtccgccgctgcgcgtcccgctccaccggcgacctctacgccgtcaagtcggtc 176 ||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct: 25841352 ggcgtcgtccaccgctgcgcctcccgctccaccggcgaggcctacgccgtcaagtcggtc 25841411 Query: 177 gaccgctcgctcctcgccgacgacctggaccgcggcctggccgagctggagcccaagctg 236 |||||||| | |||| ||||||||||||||||| || |||| ||| |||||||||||| Sbjct: 25841412 gaccgctcccgcctctccgacgacctggaccgctcgctcgccgcgctcgagcccaagctg 25841471 Query: 237 gcgcagctggccgccgcgggcaaccccggcgtcgtgcaggtgcacgcggtgtacgaggac 296 || | ||| ||||||||||||||||| |||||||||||||||||||| || ||||||||| Sbjct: 25841472 gcccggctcgccgccgcgggcaacccgggcgtcgtgcaggtgcacgccgtctacgaggac 25841531 Query: 297 gaggcgtggacgcacatggtcatggacctgtgcgccgggcccgacctgctcgactgggtc 356 || | |||||||||| |||||||||||| ||| | |||||||| | |||||||||||| Sbjct: 25841532 gacgactggacgcacacggtcatggacctctgcacgaggcccgacatcctcgactgggtc 25841591 Query: 357 cgcctccgc 365 ||||||||| Sbjct: 25841592 cgcctccgc 25841600
>gb|AF399915.1|AF399915 Sorghum bicolor phosphoenolpyruvate carboxylase kinase (PPCK) mRNA, complete cds Length = 1389 Score = 272 bits (137), Expect = 8e-70 Identities = 260/301 (86%) Strand = Plus / Plus Query: 76 gggactacgagatcggggaggaggtagggcgcggccgcttcggcgtggtccgccgctgcg 135 ||||||||||||| || | |||| | || |||||||||||||| ||||||| ||||||| Sbjct: 40 gggactacgagataggcgcggagatcggtcgcggccgcttcggggtggtccaccgctgca 99 Query: 136 cgtcccgctccaccggcgacctctacgccgtcaagtcggtcgaccgctcgctcctcgccg 195 |||||||| |||||||||| | |||||||||||| || ||||| |||| || |||| Sbjct: 100 cgtcccgcgccaccggcgaggcgttcgccgtcaagtccgtggaccggtcgcagctggccg 159 Query: 196 acgacctggaccgcggcctggccgagctggagcccaagctggcgcagctggccgccgcgg 255 ||||||||||||||| || || |||||||||||||||||||||||||| |||| ||||| Sbjct: 160 acgacctggaccgcgagctcgcggagctggagcccaagctggcgcagctcgccggcgcgg 219 Query: 256 gcaaccccggcgtcgtgcaggtgcacgcggtgtacgaggacgaggcgtggacgcacatgg 315 ||||||||||||| |||||| |||||||||||||||||||||| ||||||| |||| || Sbjct: 220 gcaaccccggcgtggtgcagacgcacgcggtgtacgaggacgagacgtggacccacacgg 279 Query: 316 tcatggacctgtgcgccgggcccgacctgctcgactgggtccgcctccgccagggcgcgc 375 | |||||||||||||| || || ||||||||||| ||||| |||||||||| ||||||| Sbjct: 280 tgatggacctgtgcgcgggcccggacctgctcgagtgggtgcgcctccgccgcggcgcgc 339 Query: 376 c 376 | Sbjct: 340 c 340
>gb|BT018640.1| Zea mays clone EL01N0504G05.d mRNA sequence Length = 1389 Score = 256 bits (129), Expect = 5e-65 Identities = 245/281 (87%), Gaps = 2/281 (0%) Strand = Plus / Plus Query: 76 gggactacgagatcggggaggaggtagggcgcggccgcttcggcgtggtccgccgctgcg 135 |||||||||||||| | |||||| | ||||||||||||||||| ||||||| ||||||| Sbjct: 33 gggactacgagatccgtgaggagatcgggcgcggccgcttcggggtggtccaccgctgca 92 Query: 136 cgtcccgctccaccggcgacctctacgccgtcaagtcggtcgaccgctcgctcctcgccg 195 |||||||| ||||||| || ||||||||||||||| || ||||| |||| || | || Sbjct: 93 cgtcccgcgccaccggggaggcctacgccgtcaagtccgtggaccggtcgcggctgggcg 152 Query: 196 acgacctggaccgcggcctggccgagctggagcccaagctggcgcagctggccgccgcgg 255 ||||||||||||||| || || |||||||||| |||||||| ||||| |||| ||||| Sbjct: 153 acgacctggaccgcgagctcgcgcagctggagccgaagctggcacagctcgccggcgcgg 212 Query: 256 gcaaccccggcgtcgtgcaggtgcacgcggtgtacgaggacgaggcgtggacgcacatgg 315 ||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 213 gcaacccgggcgtggtgcaggtgcacgcggcgtacgaggacgaggcgtggacgcacgtgg 272 Query: 316 tcatggacctgtgcgccgggccc-gacctgctcgactgggt 355 |||||||||||||| |||||||| |||||||| || ||||| Sbjct: 273 tcatggacctgtgc-ccgggcccggacctgctggagtgggt 312
>gb|AY911414.1| Zea mays phosphoenolpyruvate carboxylase kinase 2 (PPCK2) mRNA, complete cds Length = 1024 Score = 236 bits (119), Expect = 4e-59 Identities = 259/303 (85%), Gaps = 2/303 (0%) Strand = Plus / Plus Query: 76 gggactacgagatcggggaggaggtagggcgcggccgcttcggcgtggtccgccgctgcg 135 |||||||||||||||| |||||| | ||||||||||||||||| ||||||| ||||||| Sbjct: 20 gggactacgagatcggcgaggagatcgggcgcggccgcttcggggtggtccaccgctgca 79 Query: 136 cgtcccgctccaccggcgacctctacgccgtcaagtcggtcgaccgctcgctcctcgccg 195 |||||||| ||||||| || || |||||| ||||| || ||||| |||| || | || Sbjct: 80 cgtcccgcgccaccggggaggccttcgccgtgaagtccgtggaccggtcgcggctgggcg 139 Query: 196 acgacctggaccgcggcctggccgagctggagcccaagctggcgcagctggccgccgcgg 255 ||||||||||||||| || || | |||||||| |||||||||||||| |||| ||||| Sbjct: 140 acgacctggaccgcgagctcgcgcaactggagccgaagctggcgcagctcgccggcgcgg 199 Query: 256 gcaaccccggcgtcgtgcaggtgcacgcggtgtacgaggacgaggcgtggacgcacatgg 315 ||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 200 gcaacccgggcgtggtgcaggtgcacgcggcgtacgaggacgaggcgtggacgcacgtgg 259 Query: 316 tcatggacctgtgcgccgggccc-gacctgctcgactgggtccgcctccgccagggcgcg 374 |||| |||||||| |||||||| |||||||| || ||||| ||| ||||| |||||| Sbjct: 260 tcataaacctgtgc-ccgggcccggacctgctggagtgggtgggccgccgccgcggcgcg 318 Query: 375 ccc 377 ||| Sbjct: 319 ccc 321
>gb|BT018830.1| Zea mays clone EL01N0551C10.d mRNA sequence Length = 1363 Score = 226 bits (114), Expect = 4e-56 Identities = 255/302 (84%) Strand = Plus / Plus Query: 76 gggactacgagatcggggaggaggtagggcgcggccgcttcggcgtggtccgccgctgcg 135 ||||||||||||| || | |||| | || || ||||||||||| ||||||| ||||||| Sbjct: 43 gggactacgagataggcgcggagatcggtcgtggccgcttcggggtggtccaccgctgca 102 Query: 136 cgtcccgctccaccggcgacctctacgccgtcaagtcggtcgaccgctcgctcctcgccg 195 |||||||| |||||||||| || |||||| ||||| || ||||| |||| || | || Sbjct: 103 cgtcccgcgccaccggcgaggccttcgccgtgaagtccgtggaccggtcgcggctgggcg 162 Query: 196 acgacctggaccgcggcctggccgagctggagcccaagctggcgcagctggccgccgcgg 255 ||||||| ||||||| || || ||||| ||||| |||||||||||| | |||| |||| Sbjct: 163 acgacctcgaccgcgagctcgcggagctcgagccgaagctggcgcaggtcgccggtgcgg 222 Query: 256 gcaaccccggcgtcgtgcaggtgcacgcggtgtacgaggacgaggcgtggacgcacatgg 315 ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 223 gcaacccgggcgtggtgcaggtgcacgcggtgtacgaggacgaggcgtggacgcacgtgg 282 Query: 316 tcatggacctgtgcgccgggcccgacctgctcgactgggtccgcctccgccagggcgcgc 375 | |||||||||||||| ||||| |||||||| || ||||| ||| |||| | ||||||| Sbjct: 283 tgatggacctgtgcgcggggccggacctgctggagtgggtgcgcatccggcgcggcgcgc 342 Query: 376 cc 377 || Sbjct: 343 cc 344
>gb|AY911415.1| Zea mays phosphoenolpyruvate carboxylase kinase 3 (PPCK3) mRNA, complete cds Length = 995 Score = 226 bits (114), Expect = 4e-56 Identities = 255/302 (84%) Strand = Plus / Plus Query: 76 gggactacgagatcggggaggaggtagggcgcggccgcttcggcgtggtccgccgctgcg 135 ||||||||||||| || | |||| | || || ||||||||||| ||||||| ||||||| Sbjct: 64 gggactacgagataggcgcggagatcggtcgtggccgcttcggggtggtccaccgctgca 123 Query: 136 cgtcccgctccaccggcgacctctacgccgtcaagtcggtcgaccgctcgctcctcgccg 195 |||||||| |||||||||| || |||||| ||||| || ||||| |||| || | || Sbjct: 124 cgtcccgcgccaccggcgaggccttcgccgtgaagtccgtggaccggtcgcggctgggcg 183 Query: 196 acgacctggaccgcggcctggccgagctggagcccaagctggcgcagctggccgccgcgg 255 ||||||| ||||||| || || ||||| ||||| |||||||||||| | |||| |||| Sbjct: 184 acgacctcgaccgcgagctcgcggagctcgagccgaagctggcgcaggtcgccggtgcgg 243 Query: 256 gcaaccccggcgtcgtgcaggtgcacgcggtgtacgaggacgaggcgtggacgcacatgg 315 ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 244 gcaacccgggcgtggtgcaggtgcacgcggtgtacgaggacgaggcgtggacgcacgtgg 303 Query: 316 tcatggacctgtgcgccgggcccgacctgctcgactgggtccgcctccgccagggcgcgc 375 | |||||||||||||| ||||| |||||||| || ||||| ||| |||| | ||||||| Sbjct: 304 tgatggacctgtgcgcggggccggacctgctggagtgggtgcgcatccggcgcggcgcgc 363 Query: 376 cc 377 || Sbjct: 364 cc 365
>gb|AY911416.1| Zea mays phosphoenolpyruvate carboxylase kinase 4 (PPCK4) mRNA, complete cds Length = 1214 Score = 107 bits (54), Expect = 3e-20 Identities = 144/174 (82%) Strand = Plus / Plus Query: 67 aactcaaccgggactacgagatcggggaggaggtagggcgcggccgcttcggcgtggtcc 126 |||| |||||||| ||||| ||||| || ||| | || ||||| || ||||||||||||| Sbjct: 12 aactgaaccgggagtacgacatcggcgacgagatcggccgcgggcgtttcggcgtggtcc 71 Query: 127 gccgctgcgcgtcccgctccaccggcgacctctacgccgtcaagtcggtcgaccgctcgc 186 | ||||| | |||||| |||| || ||| || |||||| ||||| || ||||| || | Sbjct: 72 ggcgctgtgtctcccgcgccacgggtgacgccttcgccgtgaagtccgtggaccggtccc 131 Query: 187 tcctcgccgacgacctggaccgcggcctggccgagctggagcccaagctggcgc 240 |||||| ||||||||||||||||| ||||| ||||||||||| |||||||||| Sbjct: 132 tcctcggcgacgacctggaccgcgcgctggcggagctggagccgaagctggcgc 185 Score = 95.6 bits (48), Expect = 1e-16 Identities = 102/120 (85%) Strand = Plus / Plus Query: 258 aaccccggcgtcgtgcaggtgcacgcggtgtacgaggacgaggcgtggacgcacatggtc 317 ||||| |||||| ||||||| | ||| || ||||||| ||| || |||||||||| |||| Sbjct: 212 aacccgggcgtcttgcaggtccgcgccgtctacgagggcgacgcctggacgcacacggtc 271 Query: 318 atggacctgtgcgccgggcccgacctgctcgactgggtccgcctccgccagggcgcgccc 377 |||||||| ||| | |||||||||||||| |||||| |||||||||| | ||||||||| Sbjct: 272 atggacctctgcacggggcccgacctgctggactggatccgcctccggcgcggcgcgccc 331
>gb|DQ386731.1| Sorghum bicolor phosphoenolpyruvate carboxylase kinase 1 (PPCK1) mRNA, complete cds Length = 855 Score = 48.1 bits (24), Expect = 0.021 Identities = 51/60 (85%) Strand = Plus / Plus Query: 75 cgggactacgagatcggggaggaggtagggcgcggccgcttcggcgtggtccgccgctgc 134 ||||| |||| |||||| |||||||| |||||||| || ||||| ||||||||||||| Sbjct: 31 cgggagtacgtgatcggcgaggaggtcgggcgcgggcggttcgggacggtccgccgctgc 90
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Minus Query: 230 caagctggcgcagctggccgccg 252 ||||||||||||||||||||||| Sbjct: 4763626 caagctggcgcagctggccgccg 4763604
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Plus Query: 230 caagctggcgcagctggccgccg 252 ||||||||||||||||||||||| Sbjct: 477124 caagctggcgcagctggccgccg 477146
>gb|AE012519.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 427 of 460 of the complete genome Length = 11384 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Minus Query: 230 caagctggcgcagctggccgccg 252 ||||||||||||||||||||||| Sbjct: 6712 caagctggcgcagctggccgccg 6690
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Minus Query: 230 caagctggcgcagctggccgccg 252 ||||||||||||||||||||||| Sbjct: 4799776 caagctggcgcagctggccgccg 4799754
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Plus Query: 230 caagctggcgcagctggccgccg 252 ||||||||||||||||||||||| Sbjct: 489226 caagctggcgcagctggccgccg 489248
>ref|XM_550576.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1521 Score = 44.1 bits (22), Expect = 0.32 Identities = 43/50 (86%) Strand = Plus / Plus Query: 285 gtgtacgaggacgaggcgtggacgcacatggtcatggacctgtgcgccgg 334 ||||||||||||||||||| |||| |||||||||| || |||||||| Sbjct: 310 gtgtacgaggacgaggcgtccgtgcacctggtcatggagctctgcgccgg 359
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Plus Query: 246 gccgccgcgggcaaccccggcgtcgt 271 ||||||||||||| |||||||||||| Sbjct: 987621 gccgccgcgggcatccccggcgtcgt 987646
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 203 ggaccgcggcctggccgagctg 224 |||||||||||||||||||||| Sbjct: 4081348 ggaccgcggcctggccgagctg 4081327
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.32 Identities = 43/50 (86%) Strand = Plus / Minus Query: 285 gtgtacgaggacgaggcgtggacgcacatggtcatggacctgtgcgccgg 334 ||||||||||||||||||| |||| |||||||||| || |||||||| Sbjct: 1446693 gtgtacgaggacgaggcgtccgtgcacctggtcatggagctctgcgccgg 1446644
>dbj|AP002838.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0038F22 Length = 101666 Score = 44.1 bits (22), Expect = 0.32 Identities = 43/50 (86%) Strand = Plus / Minus Query: 285 gtgtacgaggacgaggcgtggacgcacatggtcatggacctgtgcgccgg 334 ||||||||||||||||||| |||| |||||||||| || |||||||| Sbjct: 53979 gtgtacgaggacgaggcgtccgtgcacctggtcatggagctctgcgccgg 53930
>dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0425F02 Length = 176979 Score = 44.1 bits (22), Expect = 0.32 Identities = 43/50 (86%) Strand = Plus / Minus Query: 285 gtgtacgaggacgaggcgtggacgcacatggtcatggacctgtgcgccgg 334 ||||||||||||||||||| |||| |||||||||| || |||||||| Sbjct: 155232 gtgtacgaggacgaggcgtccgtgcacctggtcatggagctctgcgccgg 155183
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 221 gctggagcccaagctggcgcagctgg 246 |||||||||||||||||||| ||||| Sbjct: 1420226 gctggagcccaagctggcgctgctgg 1420201
>ref|XM_468302.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1295 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 102 gggcgcggccgcttcggcgtggtccgccgctgc 134 |||||||||||||||||| |||||||||||| Sbjct: 103 gggcgcggccgcttcggcaccgtccgccgctgc 135
>gb|AF410884.1|AF410884 Mycobacterium avium subsp. paratuberculosis S-adenosyl-L-homocysteine hydrolase (sahH) gene, partial cds; and thimidylate kinase (tmk), MtrA (mtrA), MtrB (mtrB), and LpqB (lpqB) genes, complete cds Length = 5402 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 gcgcagctggccgccgcgggc 257 ||||||||||||||||||||| Sbjct: 945 gcgcagctggccgccgcgggc 965
>gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0049O12, from chromosome 2, complete sequence Length = 155154 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 102 gggcgcggccgcttcggcgtggtccgccgctgc 134 |||||||||||||||||| |||||||||||| Sbjct: 16638 gggcgcggccgcttcggcaccgtccgccgctgc 16670
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 cgccgctgcgcgtcccgctcc 146 ||||||||||||||||||||| Sbjct: 20474500 cgccgctgcgcgtcccgctcc 20474520
>dbj|AP004153.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1111_C07 Length = 115190 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 102 gggcgcggccgcttcggcgtggtccgccgctgc 134 |||||||||||||||||| |||||||||||| Sbjct: 104803 gggcgcggccgcttcggcaccgtccgccgctgc 104771
>dbj|AP005682.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1531_B07 Length = 115245 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 cgccgctgcgcgtcccgctcc 146 ||||||||||||||||||||| Sbjct: 102639 cgccgctgcgcgtcccgctcc 102659
>dbj|AK120674.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013161I12, full insert sequence Length = 1763 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 cgccgctgcgcgtcccgctcc 146 ||||||||||||||||||||| Sbjct: 1512 cgccgctgcgcgtcccgctcc 1532
>dbj|AK120444.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099E24, full insert sequence Length = 1765 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 cgccgctgcgcgtcccgctcc 146 ||||||||||||||||||||| Sbjct: 1514 cgccgctgcgcgtcccgctcc 1534
>dbj|AK101080.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024D05, full insert sequence Length = 1295 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 102 gggcgcggccgcttcggcgtggtccgccgctgc 134 |||||||||||||||||| |||||||||||| Sbjct: 103 gggcgcggccgcttcggcaccgtccgccgctgc 135
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 gcgcagctggccgccgcgggc 257 ||||||||||||||||||||| Sbjct: 3733789 gcgcagctggccgccgcgggc 3733769
>ref|XM_483444.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1530 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 190 tcgccgacgacctggaccgcggcc 213 ||||||||||||| |||||||||| Sbjct: 1361 tcgccgacgacctcgaccgcggcc 1384
>ref|XM_475233.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 354 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 tcgctcctcgccgacgacct 202 |||||||||||||||||||| Sbjct: 43 tcgctcctcgccgacgacct 62
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 cgctcctcgccgacgacctg 203 |||||||||||||||||||| Sbjct: 1661641 cgctcctcgccgacgacctg 1661622
>gb|BT018081.1| Zea mays clone EL01N0552A03.c mRNA sequence Length = 1329 Score = 40.1 bits (20), Expect = 5.0 Identities = 50/60 (83%) Strand = Plus / Plus Query: 75 cgggactacgagatcggggaggaggtagggcgcggccgcttcggcgtggtccgccgctgc 134 ||||| |||| | |||| |||||| | ||||||||||| ||||| ||||||||||||| Sbjct: 134 cgggagtacgtggtcggcgaggagatcgggcgcggccggttcgggacggtccgccgctgc 193
>gb|AC130729.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668F02, complete sequence Length = 178061 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 tcgctcctcgccgacgacct 202 |||||||||||||||||||| Sbjct: 117 tcgctcctcgccgacgacct 98
>gb|AC101983.16| Mus musculus chromosome 6, clone RP24-352A8, complete sequence Length = 153860 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 tggcgcagctggccgccgcg 254 |||||||||||||||||||| Sbjct: 132010 tggcgcagctggccgccgcg 132029
>gb|AY661658.1| Sorghum bicolor clone BAC 796all, complete sequence Length = 103167 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 140 ccgctccaccggcgacctctacgccgtcaagt 171 |||| |||||||||||||| ||||||||||| Sbjct: 28349 ccgcgccaccggcgacctcgtcgccgtcaagt 28318
>gb|AY661657.1| Sorghum bicolor clone BAC 60H10, complete sequence Length = 125927 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 140 ccgctccaccggcgacctctacgccgtcaagt 171 |||| |||||||||||||| ||||||||||| Sbjct: 95076 ccgcgccaccggcgacctcgtcgccgtcaagt 95045
>gb|AC137620.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0014K18, complete sequence Length = 123508 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 tcgctcctcgccgacgacct 202 |||||||||||||||||||| Sbjct: 111577 tcgctcctcgccgacgacct 111558
>gb|AY344115.1| Toxoplasma gondii heat shock protein 90 mRNA, complete cds Length = 2933 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 cccgctccaccggcgacctc 158 |||||||||||||||||||| Sbjct: 2299 cccgctccaccggcgacctc 2280
>gb|AY292370.1| Toxoplasma gondii HSP90 mRNA, complete cds Length = 2966 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 cccgctccaccggcgacctc 158 |||||||||||||||||||| Sbjct: 2317 cccgctccaccggcgacctc 2298
>ref|XM_001000981.1| PREDICTED: Mus musculus PDZ domain containing RING finger 3 (Pdzrn3), mRNA Length = 3776 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 tggcgcagctggccgccgcg 254 |||||||||||||||||||| Sbjct: 275 tggcgcagctggccgccgcg 294
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 337 ccgacctgctcgactgggtccgcc 360 ||||||||||||| |||||||||| Sbjct: 740105 ccgacctgctcgattgggtccgcc 740082
>emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete genome; segment 2/16 Length = 347786 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 gctggcgcagctggccgccg 252 |||||||||||||||||||| Sbjct: 117832 gctggcgcagctggccgccg 117813
>emb|BX640424.1| Bordetella parapertussis strain 12822, complete genome; segment 2/14 Length = 349146 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 gctggcgcagctggccgccg 252 |||||||||||||||||||| Sbjct: 121790 gctggcgcagctggccgccg 121771
>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12 Length = 348171 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 gctggcgcagctggccgccg 252 |||||||||||||||||||| Sbjct: 182823 gctggcgcagctggccgccg 182804
>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29 Length = 293050 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 cctcgccgacgacctggacc 207 |||||||||||||||||||| Sbjct: 126010 cctcgccgacgacctggacc 126029
>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29 Length = 313800 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 cctcgccgacgacctggacc 207 |||||||||||||||||||| Sbjct: 235591 cctcgccgacgacctggacc 235610 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 gctggcgcagctggccgccg 252 |||||||||||||||||||| Sbjct: 152935 gctggcgcagctggccgccg 152954
>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29 Length = 298450 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 cgacgacctggaccgcggcc 213 |||||||||||||||||||| Sbjct: 43502 cgacgacctggaccgcggcc 43521
>gb|AC091209.3| Drosophila melanogaster 3L BAC RP98-3G6 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 194979 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 tcccgctccaccggcgacct 157 |||||||||||||||||||| Sbjct: 162533 tcccgctccaccggcgacct 162514
>gb|AC010071.6| Drosophila melanogaster 3L BAC RP98-18G16 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 172540 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 tcccgctccaccggcgacct 157 |||||||||||||||||||| Sbjct: 94012 tcccgctccaccggcgacct 94031
>gb|AE005785.1| Caulobacter crescentus CB15 section 111 of 359 of the complete genome Length = 10894 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 ggaccgcggcctggccgagc 222 |||||||||||||||||||| Sbjct: 1658 ggaccgcggcctggccgagc 1677
>ref|NM_140496.2| Drosophila melanogaster CG6859-RA (CG6859), mRNA Length = 1573 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 tcccgctccaccggcgacct 157 |||||||||||||||||||| Sbjct: 210 tcccgctccaccggcgacct 191
>dbj|AK143226.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130318C18 product:semaF cytoplasmic domain associated protein 3, full insert sequence Length = 2592 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 tggcgcagctggccgccgcg 254 |||||||||||||||||||| Sbjct: 119 tggcgcagctggccgccgcg 138
>dbj|AK135776.1| Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length enriched library, clone:7420415C20 product:semaF cytoplasmic domain associated protein 3, full insert sequence Length = 621 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 tggcgcagctggccgccgcg 254 |||||||||||||||||||| Sbjct: 50 tggcgcagctggccgccgcg 69
>gb|AY051934.1| Drosophila melanogaster LD41491 full length cDNA Length = 1567 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 tcccgctccaccggcgacct 157 |||||||||||||||||||| Sbjct: 186 tcccgctccaccggcgacct 167
>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III, complete sequence Length = 907057 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 192 gccgacgacctggaccgcggcctggccg 219 |||||||||||||||| | ||||||||| Sbjct: 877402 gccgacgacctggaccaccgcctggccg 877375
>gb|AC152954.1| Mus musculus 6 BAC RP23-296N5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 203474 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 tggcgcagctggccgccgcg 254 |||||||||||||||||||| Sbjct: 201262 tggcgcagctggccgccgcg 201243
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 190 tcgccgacgacctggaccgcggcc 213 ||||||||||||| |||||||||| Sbjct: 26262502 tcgccgacgacctcgaccgcggcc 26262479
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 tcgctcctcgccgacgacct 202 |||||||||||||||||||| Sbjct: 19858953 tcgctcctcgccgacgacct 19858934
>dbj|AK173098.1| Mus musculus mRNA for mKIAA1095 protein Length = 4057 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 tggcgcagctggccgccgcg 254 |||||||||||||||||||| Sbjct: 564 tggcgcagctggccgccgcg 583
>ref|NM_018884.1| Mus musculus PDZ domain containing RING finger 3 (Pdzrn3), mRNA Length = 4120 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 tggcgcagctggccgccgcg 254 |||||||||||||||||||| Sbjct: 605 tggcgcagctggccgccgcg 624
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 accgcggcctggccgagctg 224 |||||||||||||||||||| Sbjct: 3099589 accgcggcctggccgagctg 3099570
>dbj|AP003857.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1014_E06 Length = 112241 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 190 tcgccgacgacctggaccgcggcc 213 ||||||||||||| |||||||||| Sbjct: 95427 tcgccgacgacctcgaccgcggcc 95404
>gb|AF127085.1|AF127085 Mus musculus semaphorin cytoplasmic domain-associated protein 3B (Semcap3) mRNA, complete cds Length = 3960 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 tggcgcagctggccgccgcg 254 |||||||||||||||||||| Sbjct: 449 tggcgcagctggccgccgcg 468
>gb|AF127084.1|AF127084 Mus musculus semaphorin cytoplasmic domain-associated protein 3A (Semcap3) mRNA, complete cds Length = 4120 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 tggcgcagctggccgccgcg 254 |||||||||||||||||||| Sbjct: 605 tggcgcagctggccgccgcg 624
>ref|NM_209041.1| Eremothecium gossypii ACR286Cp (ACR286C), mRNA Length = 3060 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 192 gccgacgacctggaccgcggcctggccg 219 |||||||||||||||| | ||||||||| Sbjct: 2995 gccgacgacctggaccaccgcctggccg 3022
>gb|AY911413.1| Zea mays phosphoenolpyruvate carboxylase kinase 1 (PPCK1) mRNA, complete cds Length = 1174 Score = 40.1 bits (20), Expect = 5.0 Identities = 50/60 (83%) Strand = Plus / Plus Query: 75 cgggactacgagatcggggaggaggtagggcgcggccgcttcggcgtggtccgccgctgc 134 ||||| |||| | |||| |||||| | ||||||||||| ||||| ||||||||||||| Sbjct: 128 cgggagtacgtggtcggcgaggagatcgggcgcggccggttcgggacggtccgccgctgc 187
>gb|AF170560.1|AF170560 Streptomyces coelicolor A3(2) SdrA (sdrA), SdrB (sdrB), and SdrC (sdrC) genes, complete cds Length = 4014 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 gctggcgcagctggccgccg 252 |||||||||||||||||||| Sbjct: 2092 gctggcgcagctggccgccg 2073
>gb|AE003532.3| Drosophila melanogaster chromosome 3L, section 53 of 83 of the complete sequence Length = 295875 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 tcccgctccaccggcgacct 157 |||||||||||||||||||| Sbjct: 223086 tcccgctccaccggcgacct 223067
>gb|AY048670.1| Streptomyces globisporus enediyne antitumor antibiotic C-1027 biosynthetic gene cluster, complete sequence Length = 85163 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 172 cggtcgaccgctcgctcctcgccgacga 199 |||||||||||||||| | ||||||||| Sbjct: 33303 cggtcgaccgctcgctgcccgccgacga 33330 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,960,388 Number of Sequences: 3902068 Number of extensions: 1960388 Number of successful extensions: 44158 Number of sequences better than 10.0: 80 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 42339 Number of HSP's gapped (non-prelim): 1821 length of query: 377 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 355 effective length of database: 17,147,199,772 effective search space: 6087255919060 effective search space used: 6087255919060 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
