>RR1_SPIOL (P29344) 30S ribosomal protein S1, chloroplast precursor (CS1)|
          Length = 411

 Score =  137 bits (345), Expect = 1e-32
 Identities = 70/154 (45%), Positives = 109/154 (70%), Gaps = 7/154 (4%)
 Frame = +1

Query: 1   ASLVQHVAG-LACPPLSGAS-RRPGAPM-----RPSALVCGTYVLSKDEKERERMRTLFD 159
           ASL Q +AG L CPPLS ++  +P +P      R S +V    V +   +ER++++ LF+
Sbjct: 2   ASLAQQLAGGLRCPPLSNSNLSKPFSPKHTLKPRFSPIVSAVAVSNAQTRERQKLKQLFE 61

Query: 160 EASERCRTAPMEGITFSPEDLESAVETTDIDTDIGSLIKGTVFMTTSNGAFIDIQSKATA 339
           +A ERCR APMEG++F+ +D  +A++  D ++++GS +KGTVF T +NGA +DI +K++A
Sbjct: 62  DAYERCRNAPMEGVSFTIDDFHTALDKYDFNSEMGSRVKGTVFCTDANGALVDITAKSSA 121

Query: 340 FLPIDEACLLDIDHIEEAGIRPGLVEQFMIIDEN 441
           +LP+ EAC+  I ++EEAGI PG+ E+F+II EN
Sbjct: 122 YLPLAEACIYRIKNVEEAGIIPGVREEFVIIGEN 155

>RS1A_SYNY3 (P73530) 30S ribosomal protein S1 homolog A|
          Length = 328

 Score = 52.4 bits (124), Expect = 6e-07
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
 Frame = +1

Query: 199 ITFSPEDLESAVETTDIDTDIGSLIKGTVFMTTSNGAFIDIQSKATAFLPIDEACLLDID 378
           I F+ ED  + ++  D     G ++ GTVF   S GA IDI +K  A++PI E  +  +D
Sbjct: 10  IGFTLEDFAALLDKYDYHFSPGDIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVD 69

Query: 379 HIEEAGIRPGLVEQFMII-DEN 441
             EE  ++P    +F I+ DEN
Sbjct: 70  DPEEV-LQPNETREFFILTDEN 90

>RS1_SYNP6 (P46228) 30S ribosomal protein S1|
          Length = 306

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
 Frame = +1

Query: 187 PMEGITFSPEDLESAVETTDIDTDIGSLIKGTVFMTTSNGAFIDIQSKATAFLPIDEACL 366
           P   I F+ ED  + ++  D   + G  + GTVF     GA IDI +K  AFLP+ E  +
Sbjct: 6   PAVDIGFTHEDFAALLDQYDYHFNPGDTVVGTVFNLEPRGALIDIGAKTAAFLPVQEMSI 65

Query: 367 LDIDHIEEAGIRPGLVEQFMII-DEN 441
             ++  EE  ++P  + +F I+ DEN
Sbjct: 66  NRVESPEEV-LQPSEMREFFILSDEN 90

>RS1_SYNP7 (O33698) 30S ribosomal protein S1|
          Length = 295

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 30/86 (34%), Positives = 47/86 (54%)
 Frame = +1

Query: 184 APMEGITFSPEDLESAVETTDIDTDIGSLIKGTVFMTTSNGAFIDIQSKATAFLPIDEAC 363
           +P    T S +D   A+E   +D+  G L++G V   +++GA+IDI  KA AFLP  EA 
Sbjct: 2   SPSAANTPSYDDFALALEAQSLDSQKGQLVRGKVCEYSTDGAYIDIGGKAPAFLPKREAA 61

Query: 364 LLDIDHIEEAGIRPGLVEQFMIIDEN 441
           L  +  +E    +   +E  +I D+N
Sbjct: 62  LHAVLDLEAHLPKDEELEFLVIRDQN 87

>RR1_PORPU (P51345) Chloroplast 30S ribosomal protein S1|
          Length = 263

 Score = 38.5 bits (88), Expect = 0.009
 Identities = 15/52 (28%), Positives = 30/52 (57%)
 Frame = +1

Query: 202 TFSPEDLESAVETTDIDTDIGSLIKGTVFMTTSNGAFIDIQSKATAFLPIDE 357
           +F+  +  + ++    D ++G ++ GT+F    NG  +DI +  +A+LPI E
Sbjct: 7   SFTHRNFAAVLQKYKYDLNLGDIVAGTIFSFELNGVLVDIGTPVSAYLPIQE 58

>ECR1_ARCFU (O29758) Probable exosome complex RNA-binding protein 1|
          Length = 223

 Score = 35.4 bits (80), Expect = 0.073
 Identities = 26/92 (28%), Positives = 41/92 (44%)
 Frame = +1

Query: 82  PSALVCGTYVLSKDEKERERMRTLFDEASERCRTAPMEGITFSPEDLESAVETTDIDTDI 261
           P A   GTYV  +  K   ++  LFD+     R  P++G  ++P               +
Sbjct: 15  PRAAGYGTYV--EGGKVYAKIIGLFDQTETHVRVIPLKG-RYTPS--------------V 57

Query: 262 GSLIKGTVFMTTSNGAFIDIQSKATAFLPIDE 357
           G ++ G +    +NG  +DI S   AFLP+ E
Sbjct: 58  GDVVIGIIREVAANGWAVDIYSPYQAFLPVSE 89

>RS1B_SYNY3 (P74142) 30S ribosomal protein S1 homolog B|
          Length = 305

 Score = 33.9 bits (76), Expect = 0.21
 Identities = 15/63 (23%), Positives = 30/63 (47%)
 Frame = +1

Query: 205 FSPEDLESAVETTDIDTDIGSLIKGTVFMTTSNGAFIDIQSKATAFLPIDEACLLDIDHI 384
           FS ++   A++  D   + G  + G +    + G ++D   K+  F+P+ E  L     I
Sbjct: 10  FSLDEFAKALDKHDYHAEKGQTVHGKICQHANEGVYVDFGGKSPGFVPVQELGLRPHAEI 69

Query: 385 EEA 393
           E++
Sbjct: 70  EDS 72

>RS1_BUCBP (Q89AJ3) 30S ribosomal protein S1|
          Length = 566

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 244 DIDTDIGSLIKGTVFMTTSNGAFIDIQSKATAFLPIDE 357
           +I T  GS+I+GTV   T +   +D + K+ + +PID+
Sbjct: 15  NIKTRPGSIIQGTVVAITKDTILVDAKLKSESKIPIDQ 52

>PNP_RICPR (Q9ZD43) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 745

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +1

Query: 232 VETTDIDTDIGSLIKGTVFMTTSNGAFIDIQSKATAFLPIDEACLLDIDHI 384
           ++   ++ +IG +  GTV     +GAFI+       F+ I E     ID +
Sbjct: 613 IKAIAVEPEIGEIFNGTVMKVLDSGAFINYLGNKDGFVHISEISDARIDKV 663

>NCOR1_MOUSE (Q60974) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (Retinoid X|
            receptor-interacting protein 13) (RIP13)
          Length = 2453

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 15/87 (17%)
 Frame = +1

Query: 7    LVQHVAGLACPPLSGASRRPG---------------APMRPSALVCGTYVLSKDEKERER 141
            LV H  G + PP+   +  PG               +P  P+ L        + E+ERE+
Sbjct: 1669 LVPHAGGTSTPPMDRITYIPGTQVTFPPRPYNAASLSPGHPTHLAAAASAEREREREREK 1728

Query: 142  MRTLFDEASERCRTAPMEGITFSPEDL 222
             R   +   ER R    E I  +P DL
Sbjct: 1729 ER---ERERERERERERERIAAAPADL 1752

>RS1_STAS1 (Q49XT0) 30S ribosomal protein S1|
          Length = 393

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +1

Query: 193 EGITFSPED-LESAVETTDIDTDIGSLIKGTVFMTTSNGAFIDIQSKATAFLPIDEACLL 369
           E I+ S +D L S  E+   + + G +I+GTV    + GAF++I+      + I E    
Sbjct: 255 ERISLSIKDTLPSPFESIKGEFNEGDVIEGTVVRLANFGAFVEIKPGVQGLVHISEISHS 314

Query: 370 DIDHIEEAGIRPGLVEQFMII 432
            I    EA + PG V    ++
Sbjct: 315 HIGSPSEA-LEPGQVVSVKVL 334

>PARVA_RAT (Q9HB97) Alpha-parvin (Actopaxin)|
          Length = 372

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +1

Query: 130 ERERMRTLFDEASERCRTAPMEGITFSPEDLESA-VETTDIDTDIGSLIKGTVFMTTSNG 306
           ER+   TLFD A ++        ITF  + L    +E T+++T     +   + M    G
Sbjct: 246 ERDAFDTLFDHAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEG 305

Query: 307 AFIDIQS 327
            F+ + S
Sbjct: 306 YFVPLHS 312

>PARVA_MOUSE (Q9EPC1) Alpha-parvin (Actopaxin)|
          Length = 372

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +1

Query: 130 ERERMRTLFDEASERCRTAPMEGITFSPEDLESA-VETTDIDTDIGSLIKGTVFMTTSNG 306
           ER+   TLFD A ++        ITF  + L    +E T+++T     +   + M    G
Sbjct: 246 ERDAFDTLFDHAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEG 305

Query: 307 AFIDIQS 327
            F+ + S
Sbjct: 306 YFVPLHS 312

>PARVA_HUMAN (Q9NVD7) Alpha-parvin (Calponin-like integrin-linked kinase-binding|
           protein) (CH-ILKBP)
          Length = 372

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +1

Query: 130 ERERMRTLFDEASERCRTAPMEGITFSPEDLESA-VETTDIDTDIGSLIKGTVFMTTSNG 306
           ER+   TLFD A ++        ITF  + L    +E T+++T     +   + M    G
Sbjct: 246 ERDAFDTLFDHAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEG 305

Query: 307 AFIDIQS 327
            F+ + S
Sbjct: 306 YFVPLHS 312

>ZAN_MOUSE (O88799) Zonadhesin precursor|
          Length = 5376

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 181 TAPMEGITFSPEDLESAVETTDIDTDI 261
           T P E IT SPE++ S  E T + TD+
Sbjct: 621 TIPTEVITVSPEEIISPTEVTPVPTDV 647

>RS1_CHLPN (Q9Z8M3) 30S ribosomal protein S1|
          Length = 580

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 13/58 (22%), Positives = 30/58 (51%)
 Frame = +1

Query: 184 APMEGITFSPEDLESAVETTDIDTDIGSLIKGTVFMTTSNGAFIDIQSKATAFLPIDE 357
           A  + + ++   + S+ E +D +   G+++KGTV     +   +D+  K+   +P+ E
Sbjct: 26  AEFKDLLYTAHRITSSEEESDNEIQPGAILKGTVVDINKDFVVVDVGLKSEGVIPMSE 83

>NCOR1_XENTR (Q4KKX4) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (xN-CoR)|
          Length = 2494

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 21/94 (22%)
 Frame = +1

Query: 1    ASLVQHVAGLACPPLSGASRRPG---------------APMRPSALVCGTYVLSKDEKER 135
            A LV H  G + PP+   +  PG               +P  P+ L     V ++ E+ER
Sbjct: 1720 AILVPHPGGTSTPPMDRITYIPGTQLAFPPRPYNPASMSPGHPTHLAAANSVSAERERER 1779

Query: 136  ERMRTLFDEAS------ERCRTAPMEGITFSPED 219
            ER R    E        ER R    E +  +P D
Sbjct: 1780 ERDRERDREREKEQRERERDRERERERLAAAPSD 1813

>Y2247_MYCBO (P65822) Hypothetical protein Mb2247c precursor|
          Length = 520

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 28 LACPPLSGASRRPGAPMRPSALV 96
          LA PPL+GA+  PGA   P A V
Sbjct: 26 LAAPPLAGATEEPGAGQTPGAPV 48

>Y2223_MYCTU (P65821) Hypothetical protein Rv2223c/MT2281 precursor|
          Length = 520

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 28 LACPPLSGASRRPGAPMRPSALV 96
          LA PPL+GA+  PGA   P A V
Sbjct: 26 LAAPPLAGATEEPGAGQTPGAPV 48

>ARHG7_HUMAN (Q14155) Rho guanine nucleotide exchange factor 7 (PAK-interacting|
           exchange factor beta) (Beta-Pix) (COOL-1) (p85)
          Length = 803

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 40  PLSGASRRPGAPMRPSALVCGTYVLSKDEKERERM 144
           P S +  RP  P+RPSA +C    LSK  K  +++
Sbjct: 649 PWSLSCLRPAPPLRPSAALCYKEDLSKSPKTMKKL 683

>DHSB_COXBU (P51053) Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)|
          Length = 235

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +1

Query: 115 SKDEKERERMRTLFDEASE-RCRTAPMEGITFSPEDLESAVETTDIDTDI 261
           S+D KE+ER+  + D  S  RCRT  M+  T  P++L  A     I T++
Sbjct: 179 SRDSKEKERLDAMKDPYSVFRCRTI-MDCATVCPKNLNPAKAIRKIRTEM 227

>EFG_NITEU (Q82T70) Elongation factor G (EF-G)|
          Length = 696

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +1

Query: 133 RERMRTLFDEASERCRTAPMEGITFSPEDLESAVETTDIDTDIGSLIKGTVFMTTSNGAF 312
           RE+M     EASE      +E    S ED++  +    I+ +I  ++ GT F      A 
Sbjct: 219 REKMVESAAEASEELMNKYLETGDLSIEDIKQGLRVRTINNEIVPMLCGTAFKNKGVQAM 278

Query: 313 ID 318
           +D
Sbjct: 279 LD 280

>ISPH_CLOTE (Q895G2) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 635

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 11/49 (22%), Positives = 26/49 (53%)
 Frame = +1

Query: 244 DIDTDIGSLIKGTVFMTTSNGAFIDIQSKATAFLPIDEACLLDIDHIEE 390
           ++   +G+++ GTV    S GAF++++      + I +     +D +E+
Sbjct: 555 EVKYPVGNIVLGTVVRFASFGAFVELEPGVDGLIHISQISHKRVDRVED 603

>NDK_NATPD (Q3IPM6) Nucleoside diphosphate kinase (EC 2.7.4.6) (NDK) (NDP|
           kinase) (Nucleoside-2-P kinase)
          Length = 153

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
 Frame = +1

Query: 91  LVCGTYVLSKDEKERERM-----RTLFDEASERCRTAPMEGITFSPEDLESAVETTDIDT 255
           LV G ++   DE  RE       +  FDE  E   + P+  + +  +D  + V T   +T
Sbjct: 35  LVAGKFMQIDDELAREHYAEHVDKPFFDELKEFITSGPVFAMVWEGQDAVAQVRTMMGET 94

Query: 256 DIGSLIKGTV 285
           D      GT+
Sbjct: 95  DPAESAPGTI 104

>RPOC_MYCLE (P30761) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1316

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -3

Query: 107 YVPQTSADGRIGA--PGRRDAPESGGHASPA 21
           Y   T+ DG  GA  P   D PESG ++SPA
Sbjct: 586 YYLTTAVDGDTGAYRPAAEDRPESGVYSSPA 616


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,981,559
Number of Sequences: 219361
Number of extensions: 1002223
Number of successful extensions: 3312
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 3204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3308
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)