| Clone Name | bast56f11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK065115.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001O08, full insert sequence Length = 1417 Score = 325 bits (164), Expect = 7e-86 Identities = 275/312 (88%) Strand = Plus / Plus Query: 129 ggagcgggagcggatgcgcacgctgttcgacgaggcctccgagcgctgccgcactgcgcc 188 |||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||| Sbjct: 142 ggagcgggagcggatgtgccagctgttcgacgaggcctccgagcgctgccgcaccgcgcc 201 Query: 189 catggagggcatcaccttctcgcccgaggacctcgaatccgccgtcgagaccaccgacat 248 |||||||||| || |||||||||||||||||||||| |||||||||||| |||||||||| Sbjct: 202 catggagggcgtctccttctcgcccgaggacctcgactccgccgtcgagtccaccgacat 261 Query: 249 cgacactgacattggctcactcattaaagggacagtattcatgaccacttcaaatggtgc 308 |||||| || || ||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct: 262 cgacaccgatatcggctcactcattaaaggaacagtgttcatgaccacttcaaatggtgc 321 Query: 309 atttattgacattcaatcaaaggctactgctttcttgcctatagatgaggcatgccttct 368 || | |||| || ||||| ||| ||||||||||||||||| | ||||||||||||||||| Sbjct: 322 atatgttgatatccaatcgaagtctactgctttcttgcctttggatgaggcatgccttct 381 Query: 369 tgatattgaccatatagaggaggcaggcatccggccgggtttagtggagcagttcatgat 428 ||| | |||||||||| ||||| || ||||| | ||||| || || |||||||||| Sbjct: 382 cgatgtcaaccatatagaagaggcggggatccgtgcaggtttggtagaagagttcatgat 441 Query: 429 aattgatgagaa 440 ||||| ||||| Sbjct: 442 tattgacgagaa 453
>gb|AY105404.1| Zea mays PCO138567 mRNA sequence Length = 1498 Score = 289 bits (146), Expect = 4e-75 Identities = 366/438 (83%), Gaps = 6/438 (1%) Strand = Plus / Plus Query: 13 cagcacgtcgcagggctcgcgtgcccaccgctctccggcgcgtcgcgccg---ccccggg 69 ||||||||||| || || ||||||| || || ||||||||||||||||| ||||| | Sbjct: 109 cagcacgtcgcgggcctaccgtgcccccctctatccggcgcgtcgcgccgtcgccccgcg 168 Query: 70 gcgccgatgcggcc---gtccgcgctggtctgcgggacgtacgtgctgagcaaggatgag 126 |||| || |||||| ||| ||||| || ||||| || || | ||||| |||||| ||| Sbjct: 169 gcgcagaggcggcctccgtcggcgcttgtgtgcggtacctatgcgctgaccaaggacgag 228 Query: 127 aaggagcgggagcggatgcgcacgctgttcgacgaggcctccgagcgctgccgcactgcg 186 ||||||||||||||||||| | |||||||||| |||||||||||||||||||| ||| Sbjct: 229 cgggagcgggagcggatgcgccaggtgttcgacgacgcctccgagcgctgccgcaccgcg 288 Query: 187 cccatggagggcatcaccttctcgcccgaggacctcgaatccgccgtcgagaccaccgac 246 |||||||||||| || ||||||| ||||| |||||||| ||||||||||| |||||||| Sbjct: 289 cccatggagggcgtcgccttctcccccgacgacctcgacaccgccgtcgagtccaccgac 348 Query: 247 atcgacactgacattggctcactcattaaagggacagtattcatgaccacttcaaatggt 306 || ||||| || || ||||| ||||||||||| |||||||| ||||| || ||||||||| Sbjct: 349 atagacacggagatcggctcgctcattaaaggaacagtatttatgactacctcaaatggt 408 Query: 307 gcatttattgacattcaatcaaaggctactgctttcttgcctatagatgaggcatgcctt 366 |||| ||| ||||| ||||| ||| |||||||||| ||||| ||||||||||||| ||| Sbjct: 409 gcatatatcgacatccaatccaagtctactgcttttttgcccttagatgaggcatgtctt 468 Query: 367 cttgatattgaccatatagaggaggcaggcatccggccgggtttagtggagcagttcatg 426 |||||||| || || | || ||||| ||||| || || || ||||| || | |||||| Sbjct: 469 cttgatatcgataatgttgaagaggctggcattcgtcctgggttagtagaagaattcatg 528 Query: 427 ataattgatgagaaccca 444 |||||||||||||||||| Sbjct: 529 ataattgatgagaaccca 546
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 276 bits (139), Expect = 6e-71 Identities = 231/261 (88%), Gaps = 3/261 (1%) Strand = Plus / Minus Query: 13 cagcacgtcgcagggctcgcgtgcccaccgctctccggcgcgtcgcg---ccgccccggg 69 ||||||||||| ||||| ||| |||| ||||||||||||||| |||| |||||||| | Sbjct: 11328774 cagcacgtcgcggggctggcgagcccgccgctctccggcgcgccgcggcgccgccccgcg 11328715 Query: 70 gcgccgatgcggccgtccgcgctggtctgcgggacgtacgtgctgagcaaggatgagaag 129 ||||| | ||||||||| |||||||| ||||||||||||| ||| | |||||| ||| | Sbjct: 11328714 gcgcccacgcggccgtcggcgctggtgtgcgggacgtacgcgctcaccaaggaggagcgg 11328655 Query: 130 gagcgggagcggatgcgcacgctgttcgacgaggcctccgagcgctgccgcactgcgccc 189 ||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||| Sbjct: 11328654 gagcgggagcggatgtgccagctgttcgacgaggcctccgagcgctgccgcaccgcgccc 11328595 Query: 190 atggagggcatcaccttctcgcccgaggacctcgaatccgccgtcgagaccaccgacatc 249 ||||||||| || |||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 11328594 atggagggcgtctccttctcgcccgaggacctcgactccgccgtcgagtccaccgacatc 11328535 Query: 250 gacactgacattggctcactc 270 ||||| || || ||||||||| Sbjct: 11328534 gacaccgatatcggctcactc 11328514 Score = 139 bits (70), Expect = 9e-30 Identities = 145/170 (85%) Strand = Plus / Minus Query: 271 attaaagggacagtattcatgaccacttcaaatggtgcatttattgacattcaatcaaag 330 |||||||| ||||| ||||||||||||||||||||||||| | |||| || ||||| ||| Sbjct: 11326833 attaaaggaacagtgttcatgaccacttcaaatggtgcatatgttgatatccaatcgaag 11326774 Query: 331 gctactgctttcttgcctatagatgaggcatgccttcttgatattgaccatatagaggag 390 ||||||||||||||||| | ||||||||||||||||| ||| | |||||||||| ||| Sbjct: 11326773 tctactgctttcttgcctttggatgaggcatgccttctcgatgtcaaccatatagaagag 11326714 Query: 391 gcaggcatccggccgggtttagtggagcagttcatgataattgatgagaa 440 ||||| ||||| | ||||| || || |||||||||| ||||| ||||| Sbjct: 11326713 gcagggatccgtgcaggtttggtagaagagttcatgattattgacgagaa 11326664
>gb|AC145491.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAb0085H08, from chromosome 3, complete sequence Length = 130656 Score = 276 bits (139), Expect = 6e-71 Identities = 231/261 (88%), Gaps = 3/261 (1%) Strand = Plus / Minus Query: 13 cagcacgtcgcagggctcgcgtgcccaccgctctccggcgcgtcgcg---ccgccccggg 69 ||||||||||| ||||| ||| |||| ||||||||||||||| |||| |||||||| | Sbjct: 107727 cagcacgtcgcggggctggcgagcccgccgctctccggcgcgccgcggcgccgccccgcg 107668 Query: 70 gcgccgatgcggccgtccgcgctggtctgcgggacgtacgtgctgagcaaggatgagaag 129 ||||| | ||||||||| |||||||| ||||||||||||| ||| | |||||| ||| | Sbjct: 107667 gcgcccacgcggccgtcggcgctggtgtgcgggacgtacgcgctcaccaaggaggagcgg 107608 Query: 130 gagcgggagcggatgcgcacgctgttcgacgaggcctccgagcgctgccgcactgcgccc 189 ||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||| Sbjct: 107607 gagcgggagcggatgtgccagctgttcgacgaggcctccgagcgctgccgcaccgcgccc 107548 Query: 190 atggagggcatcaccttctcgcccgaggacctcgaatccgccgtcgagaccaccgacatc 249 ||||||||| || |||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 107547 atggagggcgtctccttctcgcccgaggacctcgactccgccgtcgagtccaccgacatc 107488 Query: 250 gacactgacattggctcactc 270 ||||| || || ||||||||| Sbjct: 107487 gacaccgatatcggctcactc 107467 Score = 139 bits (70), Expect = 9e-30 Identities = 145/170 (85%) Strand = Plus / Minus Query: 271 attaaagggacagtattcatgaccacttcaaatggtgcatttattgacattcaatcaaag 330 |||||||| ||||| ||||||||||||||||||||||||| | |||| || ||||| ||| Sbjct: 105786 attaaaggaacagtgttcatgaccacttcaaatggtgcatatgttgatatccaatcgaag 105727 Query: 331 gctactgctttcttgcctatagatgaggcatgccttcttgatattgaccatatagaggag 390 ||||||||||||||||| | ||||||||||||||||| ||| | |||||||||| ||| Sbjct: 105726 tctactgctttcttgcctttggatgaggcatgccttctcgatgtcaaccatatagaagag 105667 Query: 391 gcaggcatccggccgggtttagtggagcagttcatgataattgatgagaa 440 ||||| ||||| | ||||| || || |||||||||| ||||| ||||| Sbjct: 105666 gcagggatccgtgcaggtttggtagaagagttcatgattattgacgagaa 105617
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 276 bits (139), Expect = 6e-71 Identities = 231/261 (88%), Gaps = 3/261 (1%) Strand = Plus / Minus Query: 13 cagcacgtcgcagggctcgcgtgcccaccgctctccggcgcgtcgcg---ccgccccggg 69 ||||||||||| ||||| ||| |||| ||||||||||||||| |||| |||||||| | Sbjct: 11325537 cagcacgtcgcggggctggcgagcccgccgctctccggcgcgccgcggcgccgccccgcg 11325478 Query: 70 gcgccgatgcggccgtccgcgctggtctgcgggacgtacgtgctgagcaaggatgagaag 129 ||||| | ||||||||| |||||||| ||||||||||||| ||| | |||||| ||| | Sbjct: 11325477 gcgcccacgcggccgtcggcgctggtgtgcgggacgtacgcgctcaccaaggaggagcgg 11325418 Query: 130 gagcgggagcggatgcgcacgctgttcgacgaggcctccgagcgctgccgcactgcgccc 189 ||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||| Sbjct: 11325417 gagcgggagcggatgtgccagctgttcgacgaggcctccgagcgctgccgcaccgcgccc 11325358 Query: 190 atggagggcatcaccttctcgcccgaggacctcgaatccgccgtcgagaccaccgacatc 249 ||||||||| || |||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 11325357 atggagggcgtctccttctcgcccgaggacctcgactccgccgtcgagtccaccgacatc 11325298 Query: 250 gacactgacattggctcactc 270 ||||| || || ||||||||| Sbjct: 11325297 gacaccgatatcggctcactc 11325277 Score = 139 bits (70), Expect = 9e-30 Identities = 145/170 (85%) Strand = Plus / Minus Query: 271 attaaagggacagtattcatgaccacttcaaatggtgcatttattgacattcaatcaaag 330 |||||||| ||||| ||||||||||||||||||||||||| | |||| || ||||| ||| Sbjct: 11323596 attaaaggaacagtgttcatgaccacttcaaatggtgcatatgttgatatccaatcgaag 11323537 Query: 331 gctactgctttcttgcctatagatgaggcatgccttcttgatattgaccatatagaggag 390 ||||||||||||||||| | ||||||||||||||||| ||| | |||||||||| ||| Sbjct: 11323536 tctactgctttcttgcctttggatgaggcatgccttctcgatgtcaaccatatagaagag 11323477 Query: 391 gcaggcatccggccgggtttagtggagcagttcatgataattgatgagaa 440 ||||| ||||| | ||||| || || |||||||||| ||||| ||||| Sbjct: 11323476 gcagggatccgtgcaggtttggtagaagagttcatgattattgacgagaa 11323427
>gb|AC134230.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0005J15, complete sequence Length = 159270 Score = 276 bits (139), Expect = 6e-71 Identities = 231/261 (88%), Gaps = 3/261 (1%) Strand = Plus / Minus Query: 13 cagcacgtcgcagggctcgcgtgcccaccgctctccggcgcgtcgcg---ccgccccggg 69 ||||||||||| ||||| ||| |||| ||||||||||||||| |||| |||||||| | Sbjct: 37071 cagcacgtcgcggggctggcgagcccgccgctctccggcgcgccgcggcgccgccccgcg 37012 Query: 70 gcgccgatgcggccgtccgcgctggtctgcgggacgtacgtgctgagcaaggatgagaag 129 ||||| | ||||||||| |||||||| ||||||||||||| ||| | |||||| ||| | Sbjct: 37011 gcgcccacgcggccgtcggcgctggtgtgcgggacgtacgcgctcaccaaggaggagcgg 36952 Query: 130 gagcgggagcggatgcgcacgctgttcgacgaggcctccgagcgctgccgcactgcgccc 189 ||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||| Sbjct: 36951 gagcgggagcggatgtgccagctgttcgacgaggcctccgagcgctgccgcaccgcgccc 36892 Query: 190 atggagggcatcaccttctcgcccgaggacctcgaatccgccgtcgagaccaccgacatc 249 ||||||||| || |||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 36891 atggagggcgtctccttctcgcccgaggacctcgactccgccgtcgagtccaccgacatc 36832 Query: 250 gacactgacattggctcactc 270 ||||| || || ||||||||| Sbjct: 36831 gacaccgatatcggctcactc 36811 Score = 139 bits (70), Expect = 9e-30 Identities = 145/170 (85%) Strand = Plus / Minus Query: 271 attaaagggacagtattcatgaccacttcaaatggtgcatttattgacattcaatcaaag 330 |||||||| ||||| ||||||||||||||||||||||||| | |||| || ||||| ||| Sbjct: 35130 attaaaggaacagtgttcatgaccacttcaaatggtgcatatgttgatatccaatcgaag 35071 Query: 331 gctactgctttcttgcctatagatgaggcatgccttcttgatattgaccatatagaggag 390 ||||||||||||||||| | ||||||||||||||||| ||| | |||||||||| ||| Sbjct: 35070 tctactgctttcttgcctttggatgaggcatgccttctcgatgtcaaccatatagaagag 35011 Query: 391 gcaggcatccggccgggtttagtggagcagttcatgataattgatgagaa 440 ||||| ||||| | ||||| || || |||||||||| ||||| ||||| Sbjct: 35010 gcagggatccgtgcaggtttggtagaagagttcatgattattgacgagaa 34961
>ref|NM_005990.2| Homo sapiens serine/threonine kinase 10 (STK10), mRNA Length = 4398 Score = 48.1 bits (24), Expect = 0.026 Identities = 33/36 (91%) Strand = Plus / Plus Query: 110 tgctgagcaaggatgagaaggagcgggagcggatgc 145 ||||| ||||| |||||||||||||||||| ||||| Sbjct: 2532 tgctgcgcaagcatgagaaggagcgggagcagatgc 2567
>gb|BC070077.1| Homo sapiens serine/threonine kinase 10, mRNA (cDNA clone MGC:87394 IMAGE:5267449), complete cds Length = 4398 Score = 48.1 bits (24), Expect = 0.026 Identities = 33/36 (91%) Strand = Plus / Plus Query: 110 tgctgagcaaggatgagaaggagcgggagcggatgc 145 ||||| ||||| |||||||||||||||||| ||||| Sbjct: 2532 tgctgcgcaagcatgagaaggagcgggagcagatgc 2567
>dbj|AK022960.1| Homo sapiens cDNA FLJ12898 fis, clone NT2RP2004239, highly similar to Homo sapiens lok mRNA for protein kinase Length = 3044 Score = 48.1 bits (24), Expect = 0.026 Identities = 33/36 (91%) Strand = Plus / Plus Query: 110 tgctgagcaaggatgagaaggagcgggagcggatgc 145 ||||| ||||| |||||||||||||||||| ||||| Sbjct: 1191 tgctgcgcaagcatgagaaggagcgggagcagatgc 1226
>gb|AY335689.1| Synthetic construct Homo sapiens serine/threonine kinase 10 (STK10) mRNA, partial cds Length = 2907 Score = 48.1 bits (24), Expect = 0.026 Identities = 33/36 (91%) Strand = Plus / Plus Query: 110 tgctgagcaaggatgagaaggagcgggagcggatgc 145 ||||| ||||| |||||||||||||||||| ||||| Sbjct: 2318 tgctgcgcaagcatgagaaggagcgggagcagatgc 2353
>dbj|AB015718.1| Homo sapiens lok mRNA for protein kinase, complete cds Length = 4221 Score = 48.1 bits (24), Expect = 0.026 Identities = 33/36 (91%) Strand = Plus / Plus Query: 110 tgctgagcaaggatgagaaggagcgggagcggatgc 145 ||||| ||||| |||||||||||||||||| ||||| Sbjct: 2368 tgctgcgcaagcatgagaaggagcgggagcagatgc 2403
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 128 aggagcgggagcggatgcgcacg 150 ||||||||||||||||||||||| Sbjct: 4662991 aggagcgggagcggatgcgcacg 4662969
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 71 cgccgatgcggccgtccgcgct 92 |||||||||||||||||||||| Sbjct: 43188 cgccgatgcggccgtccgcgct 43209
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 71 cgccgatgcggccgtccgcgct 92 |||||||||||||||||||||| Sbjct: 847033 cgccgatgcggccgtccgcgct 847054
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 71 cgccgatgcggccgtccgcgct 92 |||||||||||||||||||||| Sbjct: 689449 cgccgatgcggccgtccgcgct 689470
>emb|AL845493.5| Zebrafish DNA sequence from clone DKEYP-77C8 in linkage group 20, complete sequence Length = 176916 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 200 tcaccttctcgcccgaggacct 221 |||||||||||||||||||||| Sbjct: 22783 tcaccttctcgcccgaggacct 22762
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 71 cgccgatgcggccgtccgcgct 92 |||||||||||||||||||||| Sbjct: 597928 cgccgatgcggccgtccgcgct 597949
>gb|AC095491.7| Rattus norvegicus 4 BAC CH230-7L13 (Children's Hospital Oakland Research Institute) complete sequence Length = 293757 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 364 cttcttgatattgaccatata 384 ||||||||||||||||||||| Sbjct: 31690 cttcttgatattgaccatata 31710
>gb|AY993941.1| Microbacterium arborescens strain SE 14 cosmid MAS10D5, complete sequence Length = 33203 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 75 gatgcggccgtccgcgctggt 95 ||||||||||||||||||||| Sbjct: 29672 gatgcggccgtccgcgctggt 29652
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 ccggggcgccgatgcggccgt 85 ||||||||||||||||||||| Sbjct: 673844 ccggggcgccgatgcggccgt 673824 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 48 cggcgcgtcgcgccgccccggggcgccg 75 ||||||| |||||||| ||||||||||| Sbjct: 1486342 cggcgcgccgcgccgcgccggggcgccg 1486315
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 325 tcaaaggctactgctttcttg 345 ||||||||||||||||||||| Sbjct: 17984800 tcaaaggctactgctttcttg 17984820 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 tgagcaaggatgagaaggag 132 |||||||||||||||||||| Sbjct: 12646425 tgagcaaggatgagaaggag 12646444
>dbj|AP005929.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0071G09 Length = 169148 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 325 tcaaaggctactgctttcttg 345 ||||||||||||||||||||| Sbjct: 51106 tcaaaggctactgctttcttg 51126
>emb|BX296546.6| Zebrafish DNA sequence from clone CH211-234P1 in linkage group 4, complete sequence Length = 174235 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 264 ctcactcattaaagggacagt 284 ||||||||||||||||||||| Sbjct: 97415 ctcactcattaaagggacagt 97435
>emb|CT025691.7| Zebrafish DNA sequence from clone CH211-206I4 in linkage group 4, complete sequence Length = 68685 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 264 ctcactcattaaagggacagt 284 ||||||||||||||||||||| Sbjct: 16563 ctcactcattaaagggacagt 16583
>ref|XM_508535.1| PREDICTED: Pan troglodytes similar to KIAA0404 (LOC451304), mRNA Length = 9144 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 ggccgggtttagtggagcag 420 |||||||||||||||||||| Sbjct: 154 ggccgggtttagtggagcag 135
>gb|AC102231.12| Mus musculus chromosome 18, clone RP24-76A21, complete sequence Length = 174136 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 caaggatgagaaggagcggg 136 |||||||||||||||||||| Sbjct: 33703 caaggatgagaaggagcggg 33684
>ref|XM_604746.2| PREDICTED: Bos taurus similar to Serine/threonine-protein kinase 10 (Lymphocyte-oriented kinase) (LOC526376), partial mRNA Length = 4672 Score = 40.1 bits (20), Expect = 6.3 Identities = 32/36 (88%) Strand = Plus / Plus Query: 110 tgctgagcaaggatgagaaggagcgggagcggatgc 145 ||||| ||||| ||||||||||||| |||| ||||| Sbjct: 1777 tgctgcgcaagcatgagaaggagcgcgagcagatgc 1812
>gb|BC023108.1| Mus musculus leukocyte receptor cluster (LRC) member 1, mRNA (cDNA clone MGC:28381 IMAGE:4021762), complete cds Length = 2288 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 119 aggatgagaaggagcgggagcgga 142 |||| ||||||||||||||||||| Sbjct: 479 aggaggagaaggagcgggagcgga 502
>ref|XM_748288.1| Aspergillus fumigatus Af293 ABC transporter (Afu5g12720) partial mRNA Length = 4296 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 cgccgtcgagaccaccgaca 247 |||||||||||||||||||| Sbjct: 321 cgccgtcgagaccaccgaca 302
>ref|XM_846392.1| PREDICTED: Canis familiaris similar to nuclear receptor co-repressor 1, transcript variant 2 (LOC479515), mRNA Length = 7723 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gagaaggagcgggagcggat 143 |||||||||||||||||||| Sbjct: 5457 gagaaggagcgggagcggat 5476
>ref|XM_858727.1| PREDICTED: Canis familiaris similar to nuclear receptor co-repressor 1, transcript variant 7 (LOC479515), mRNA Length = 7253 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gagaaggagcgggagcggat 143 |||||||||||||||||||| Sbjct: 5457 gagaaggagcgggagcggat 5476
>ref|XM_858702.1| PREDICTED: Canis familiaris similar to nuclear receptor co-repressor 1, transcript variant 6 (LOC479515), mRNA Length = 7032 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gagaaggagcgggagcggat 143 |||||||||||||||||||| Sbjct: 4879 gagaaggagcgggagcggat 4898
>ref|XM_536653.2| PREDICTED: Canis familiaris similar to nuclear receptor co-repressor 1, transcript variant 1 (LOC479515), mRNA Length = 8332 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gagaaggagcgggagcggat 143 |||||||||||||||||||| Sbjct: 5457 gagaaggagcgggagcggat 5476
>ref|XM_858611.1| PREDICTED: Canis familiaris similar to nuclear receptor co-repressor 1, transcript variant 3 (LOC479515), mRNA Length = 7675 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gagaaggagcgggagcggat 143 |||||||||||||||||||| Sbjct: 5409 gagaaggagcgggagcggat 5428
>emb|AL139182.24| Human DNA sequence from clone RP11-278A16 on chromosome 13 Contains a proteasome (prosome, macropain) activator subunit 2 (PA28 beta) (PSME2) pseudogene, complete sequence Length = 133202 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 gacatcgacactgacattgg 263 |||||||||||||||||||| Sbjct: 38357 gacatcgacactgacattgg 38376
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 gatgcgcacgctgttcgacg 160 |||||||||||||||||||| Sbjct: 2448205 gatgcgcacgctgttcgacg 2448224 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 gccgatgcggccgtccgcgc 91 |||||||||||||||||||| Sbjct: 255402 gccgatgcggccgtccgcgc 255383
>emb|CR626905.5| Zebrafish DNA sequence from clone DKEY-85H21 in linkage group 15, complete sequence Length = 201465 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 351 agatgaggcatgccttcttgatat 374 |||||||| ||||||||||||||| Sbjct: 158662 agatgaggaatgccttcttgatat 158685
>gb|AC130680.13| Mus musculus chromosome 7, clone RP23-180G17, complete sequence Length = 136680 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 119 aggatgagaaggagcgggagcgga 142 |||| ||||||||||||||||||| Sbjct: 82294 aggaggagaaggagcgggagcgga 82271
>gb|AE005806.1| Caulobacter crescentus CB15 section 132 of 359 of the complete genome Length = 10111 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 cttctcgcccgaggacctcg 223 |||||||||||||||||||| Sbjct: 1548 cttctcgcccgaggacctcg 1567
>ref|NM_027203.2| Mus musculus leukocyte receptor cluster (LRC) member 1 (Leng1), mRNA Length = 2288 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 119 aggatgagaaggagcgggagcgga 142 |||| ||||||||||||||||||| Sbjct: 479 aggaggagaaggagcgggagcgga 502
>gb|AF176914.5| Oryctolagus cuniculus hypoxia-induced corneal CYP4B1-like isozyme mRNA short form, complete cds Length = 1818 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 aggatgagaaggagcgggag 138 |||||||||||||||||||| Sbjct: 824 aggatgagaaggagcgggag 843
>gb|AF332576.4| Oryctolagus cuniculus CYP4B1 isoform mRNA long form, complete cds Length = 2034 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 aggatgagaaggagcgggag 138 |||||||||||||||||||| Sbjct: 824 aggatgagaaggagcgggag 843
>gb|AC066606.7| Homo sapiens chromosome 3 clone RP11-74E4 map 3p, complete sequence Length = 181900 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 taattgatgagaacccaatg 447 |||||||||||||||||||| Sbjct: 181812 taattgatgagaacccaatg 181831
>gb|AC026199.6| Homo sapiens chromosome 3 clone RP11-507D6 map 3p, complete sequence Length = 201531 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 366 tcttgatattgaccatatagagga 389 |||||||||| ||||||||||||| Sbjct: 13983 tcttgatattcaccatatagagga 13960
>dbj|AK005095.1| Mus musculus adult male cerebellum cDNA, RIKEN full-length enriched library, clone:1500001K17 product:similar to LENG1 PROTEIN (FRAGMENT) [Homo sapiens], full insert sequence Length = 868 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 119 aggatgagaaggagcgggagcgga 142 |||| ||||||||||||||||||| Sbjct: 110 aggaggagaaggagcgggagcgga 133
>dbj|AK037634.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130030P06 product:similar to LENG1 PROTEIN (FRAGMENT) [Homo sapiens], full insert sequence Length = 1871 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 119 aggatgagaaggagcgggagcgga 142 |||| ||||||||||||||||||| Sbjct: 126 aggaggagaaggagcgggagcgga 149
>dbj|AK020854.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930014D07 product:unclassifiable, full insert sequence Length = 974 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 tattcatgaccacttcaaat 303 |||||||||||||||||||| Sbjct: 356 tattcatgaccacttcaaat 375
>gb|AC154541.2| Mus musculus BAC clone RP23-458N20 from chromosome 13, complete sequence Length = 174991 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 gttcatgataattgatgaga 439 |||||||||||||||||||| Sbjct: 58244 gttcatgataattgatgaga 58263
>gb|AC069247.5|AC069247 Homo sapiens chromosome 3 clone RP11-489O22 map 3p, complete sequence Length = 180234 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 366 tcttgatattgaccatatagagga 389 |||||||||| ||||||||||||| Sbjct: 117044 tcttgatattcaccatatagagga 117067
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 cgcgccgccccggggcgccg 75 |||||||||||||||||||| Sbjct: 952139 cgcgccgccccggggcgccg 952158
>dbj|AP004757.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0652D10 Length = 156744 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 tgagcaaggatgagaaggag 132 |||||||||||||||||||| Sbjct: 128738 tgagcaaggatgagaaggag 128757
>dbj|AK068142.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134C08, full insert sequence Length = 1180 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 tgagcaaggatgagaaggag 132 |||||||||||||||||||| Sbjct: 787 tgagcaaggatgagaaggag 806
>gb|AC171680.5| Mus musculus chromosome 7, clone RP23-146B24, complete sequence Length = 200031 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 119 aggatgagaaggagcgggagcgga 142 |||| ||||||||||||||||||| Sbjct: 78695 aggaggagaaggagcgggagcgga 78672
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 9 ggtccagcacgtcgcagggctcgc 32 |||||||||||| ||||||||||| Sbjct: 4261631 ggtccagcacgtagcagggctcgc 4261654
>gb|U33472.1|RNU33472 Rattus norvegicus type 1 astrocyte and olfactory-limbic associated protein AT1-46 mRNA, complete cds Length = 4301 Score = 40.1 bits (20), Expect = 6.3 Identities = 32/36 (88%) Strand = Plus / Plus Query: 110 tgctgagcaaggatgagaaggagcgggagcggatgc 145 ||||| ||||| | |||||||||||||||| ||||| Sbjct: 1615 tgctgcgcaagcacgagaaggagcgggagcagatgc 1650
>gb|AC127583.4| Mus musculus BAC clone RP24-121M11 from 13, complete sequence Length = 152618 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tattcatgaccacttcaaat 303 |||||||||||||||||||| Sbjct: 107841 tattcatgaccacttcaaat 107822
>gb|AC066585.6| Homo sapiens chromosome 3 clone RP11-24B16 map 3p, complete sequence Length = 134862 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 366 tcttgatattgaccatatagagga 389 |||||||||| ||||||||||||| Sbjct: 56714 tcttgatattcaccatatagagga 56737
>gb|M29852.1|RABCY450DA Rabbit cytochrome P-450 isozyme 5 (P450 IVB1) mRNA, complete cds Length = 2025 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 aggatgagaaggagcgggag 138 |||||||||||||||||||| Sbjct: 815 aggatgagaaggagcgggag 834 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,210,688 Number of Sequences: 3902068 Number of extensions: 3210688 Number of successful extensions: 64199 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62907 Number of HSP's gapped (non-prelim): 1282 length of query: 466 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 444 effective length of database: 17,147,199,772 effective search space: 7613356698768 effective search space used: 7613356698768 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)