ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast56f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY103761.1| Zea mays PCO149839 mRNA sequence 125 1e-25
2ref|NM_192999.1| Oryza sativa (japonica cultivar-group), predic... 123 6e-25
3dbj|AK102472.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 6e-25
4gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome... 68 3e-08
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
7dbj|AP003332.4| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
8dbj|AP003546.4| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
9dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
10dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
11gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 44 0.42
12gb|AY585706.1| Cyprinus carpio coilin p80 mRNA, partial cds 42 1.7
13gb|AC123044.4| Mus musculus BAC clone RP24-548B7 from chromosome... 42 1.7
14gb|AY349011.1| Burkholderia cepacia phage Bcep22, complete genome 42 1.7
15emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete ... 42 1.7
16dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103 42 1.7
17gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome 42 1.7
18gb|AC015604.5|AC015604 Homo sapiens, clone RP11-45D18, complete ... 42 1.7
19emb|AJ339750.1|HSA339750 Homo sapiens genomic sequence surroundi... 42 1.7
20dbj|AP000428.3| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 1.7
21gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete... 42 1.7
22ref|NM_188968.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.6
23emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 40 6.6
24emb|AL606632.5| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.6
25gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 6.6
26gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome 40 6.6
27dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
28dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
29ref|XM_222251.3| PREDICTED: Rattus norvegicus E1A binding protei... 40 6.6
30dbj|AP003541.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
31dbj|AP006164.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
32dbj|AP003369.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
33dbj|AP004737.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
34dbj|AK072222.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
35gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome 40 6.6

>gb|AY103761.1| Zea mays PCO149839 mRNA sequence
          Length = 693

 Score =  125 bits (63), Expect = 1e-25
 Identities = 132/155 (85%)
 Strand = Plus / Plus

                                                                       
Query: 329 gaggtagactgggagaccgcctacttcatccggcaccgtcccgccaacaacgtcgccgac 388
           ||||| ||||||||| || |||||||||||| |||||  |||   | |||||||||||||
Sbjct: 368 gaggtggactgggagtccacctacttcatccagcaccaccccaagaccaacgtcgccgac 427

                                                                       
Query: 389 ttcccggagatcccgccggccacacgagagatgctcgacgtgtacatcggacagatggtg 448
           ||||| |||||| ||||| | |||||||||| ||| |||| |||| |||  |||||||||
Sbjct: 428 ttcccagagatcacgccgccgacacgagagacgctggacgcgtacgtcgcgcagatggtg 487

                                              
Query: 449 tcgctcgcagagcggctggccgagtgcatgagcct 483
           || ||||| ||||| ||||||||||||||||||||
Sbjct: 488 tccctcgcggagcgtctggccgagtgcatgagcct 522



 Score =  123 bits (62), Expect = 6e-25
 Identities = 125/146 (85%)
 Strand = Plus / Plus

                                                                       
Query: 139 gctccacgaagcctgcaaggactggggcttcttctgggtggacagccatggcgtcgacgc 198
           ||||||||| |||||||||||||||||||||||||||||||| | ||| ||||| |||||
Sbjct: 172 gctccacgacgcctgcaaggactggggcttcttctgggtggagaaccacggcgtggacgc 231

                                                                       
Query: 199 cgcgctgatggaggaggtgaagcgcttcgtgtatgcccactacgacgagcatctcaagga 258
             |||||||||| ||||| ||||||||||| || | ||||||||| ||||| ||  ||| 
Sbjct: 232 gccgctgatggacgaggtcaagcgcttcgtctacggccactacgaggagcacctggaggc 291

                                     
Query: 259 taggttctacgcctcggacctcgcca 284
            | |||||||||||| | ||||||||
Sbjct: 292 caagttctacgcctccgccctcgcca 317



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>ref|NM_192999.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 939

 Score =  123 bits (62), Expect = 6e-25
 Identities = 134/158 (84%)
 Strand = Plus / Plus

                                                                       
Query: 128 accatggcgcggctccacgaagcctgcaaggactggggcttcttctgggtggacagccat 187
           |||||||| | ||||||||| ||||| |||||||||||||||||||||||||| | ||||
Sbjct: 61  accatggcccagctccacgaggcctgtaaggactggggcttcttctgggtggaaaaccat 120

                                                                       
Query: 188 ggcgtcgacgccgcgctgatggaggaggtgaagcgcttcgtgtatgcccactacgacgag 247
           ||||| || || ||| | ||||||||||||||| ||||||||||   ||| |||||||||
Sbjct: 121 ggcgtggaggcggcgttaatggaggaggtgaagagcttcgtgtaccgccattacgacgag 180

                                                 
Query: 248 catctcaaggataggttctacgcctcggacctcgccaa 285
           || ||  || | |  ||||||||||| |||||||||||
Sbjct: 181 cacctggagaagaaattctacgcctccgacctcgccaa 218



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                       
Query: 335 gactgggagaccgcctacttcatccggcaccgtcccgccaacaacgtcgccgacttcccg 394
           ||||||||| || |||||||||||| |||||| |||   |||| || |||||||||||||
Sbjct: 286 gactgggaggccacctacttcatccagcaccgccccaagaacaccgccgccgacttcccg 345

                         
Query: 395 gagatcccgccggc 408
           || |||||||||||
Sbjct: 346 gacatcccgccggc 359



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>dbj|AK102472.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094H01, full
           insert sequence
          Length = 1183

 Score =  123 bits (62), Expect = 6e-25
 Identities = 134/158 (84%)
 Strand = Plus / Plus

                                                                       
Query: 128 accatggcgcggctccacgaagcctgcaaggactggggcttcttctgggtggacagccat 187
           |||||||| | ||||||||| ||||| |||||||||||||||||||||||||| | ||||
Sbjct: 183 accatggcccagctccacgaggcctgtaaggactggggcttcttctgggtggaaaaccat 242

                                                                       
Query: 188 ggcgtcgacgccgcgctgatggaggaggtgaagcgcttcgtgtatgcccactacgacgag 247
           ||||| || || ||| | ||||||||||||||| ||||||||||   ||| |||||||||
Sbjct: 243 ggcgtggaggcggcgttaatggaggaggtgaagagcttcgtgtaccgccattacgacgag 302

                                                 
Query: 248 catctcaaggataggttctacgcctcggacctcgccaa 285
           || ||  || | |  ||||||||||| |||||||||||
Sbjct: 303 cacctggagaagaaattctacgcctccgacctcgccaa 340



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                       
Query: 335 gactgggagaccgcctacttcatccggcaccgtcccgccaacaacgtcgccgacttcccg 394
           ||||||||| || |||||||||||| |||||| |||   |||| || |||||||||||||
Sbjct: 408 gactgggaggccacctacttcatccagcaccgccccaagaacaccgccgccgacttcccg 467

                         
Query: 395 gagatcccgccggc 408
           || |||||||||||
Sbjct: 468 gacatcccgccggc 481



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>gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_B02,
             complete sequence
          Length = 125650

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                         
Query: 335   gactgggagaccgcctacttcatccggcaccgtcccgccaacaacgtcgccgacttcccg 394
             ||||||||| || |||||||| ||| |||||| |||   ||||||| |||||||||||||
Sbjct: 68384 gactgggaggccacctacttcgtccagcaccgccccaagaacaacgccgccgacttcccg 68325

                           
Query: 395   gagatcccgccggc 408
             || |||||||||||
Sbjct: 68324 gacatcccgccggc 68311



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                
Query: 235   ccactacgacgagcatctcaaggataggttctacgcctcggacctcgccaa 285
             ||||||||||||||||||| || | | |||||||||||| |||||||||||
Sbjct: 69239 ccactacgacgagcatctcgagaacaagttctacgcctccgacctcgccaa 69189



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                            
Query: 335      gactgggagaccgcctacttcatccggcaccgtcccgccaacaacgtcgccgacttcccg 394
                ||||||||| || |||||||| ||| |||||| |||   ||||||| |||||||||||||
Sbjct: 20646344 gactgggaggccacctacttcgtccagcaccgccccaagaacaacgccgccgacttcccg 20646285

                              
Query: 395      gagatcccgccggc 408
                || |||||||||||
Sbjct: 20646284 gacatcccgccggc 20646271



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                   
Query: 235      ccactacgacgagcatctcaaggataggttctacgcctcggacctcgccaa 285
                ||||||||||||||||||| || | | |||||||||||| |||||||||||
Sbjct: 20647199 ccactacgacgagcatctcgagaacaagttctacgcctccgacctcgccaa 20647149



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                            
Query: 335      gactgggagaccgcctacttcatccggcaccgtcccgccaacaacgtcgccgacttcccg 394
                ||||||||| || |||||||||||| |||||| |||   |||| || |||||||||||||
Sbjct: 22486302 gactgggaggccacctacttcatccagcaccgccccaagaacaccgccgccgacttcccg 22486361

                              
Query: 395      gagatcccgccggc 408
                || |||||||||||
Sbjct: 22486362 gacatcccgccggc 22486375



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 46/50 (92%)
 Strand = Plus / Plus

                                                                  
Query: 128      accatggcgcggctccacgaagcctgcaaggactggggcttcttctgggt 177
                |||||||| | ||||||||| ||||| |||||||||||||||||||||||
Sbjct: 22485788 accatggcccagctccacgaggcctgtaaggactggggcttcttctgggt 22485837



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 91/111 (81%)
 Strand = Plus / Plus

                                                                            
Query: 175      ggtggacagccatggcgtcgacgccgcgctgatggaggaggtgaagcgcttcgtgtatgc 234
                |||||| | ||||||||| || || ||| | ||||||||||||||| ||||||||||   
Sbjct: 22486124 ggtggaaaaccatggcgtggaggcggcgttaatggaggaggtgaagagcttcgtgtaccg 22486183

                                                                   
Query: 235      ccactacgacgagcatctcaaggataggttctacgcctcggacctcgccaa 285
                ||| ||||||||||| ||  || | |  ||||||||||| |||||||||||
Sbjct: 22486184 ccattacgacgagcacctggagaagaaattctacgcctccgacctcgccaa 22486234



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 149      gcctgcaaggactggggcttcttc 172
                |||||| |||||||||||||||||
Sbjct: 14085115 gcctgccaggactggggcttcttc 14085138



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>dbj|AP003332.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1097D05
          Length = 144879

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                        
Query: 335  gactgggagaccgcctacttcatccggcaccgtcccgccaacaacgtcgccgacttcccg 394
            ||||||||| || |||||||||||| |||||| |||   |||| || |||||||||||||
Sbjct: 2039 gactgggaggccacctacttcatccagcaccgccccaagaacaccgccgccgacttcccg 2098

                          
Query: 395  gagatcccgccggc 408
            || |||||||||||
Sbjct: 2099 gacatcccgccggc 2112



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 46/50 (92%)
 Strand = Plus / Plus

                                                              
Query: 128  accatggcgcggctccacgaagcctgcaaggactggggcttcttctgggt 177
            |||||||| | ||||||||| ||||| |||||||||||||||||||||||
Sbjct: 1525 accatggcccagctccacgaggcctgtaaggactggggcttcttctgggt 1574



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 91/111 (81%)
 Strand = Plus / Plus

                                                                        
Query: 175  ggtggacagccatggcgtcgacgccgcgctgatggaggaggtgaagcgcttcgtgtatgc 234
            |||||| | ||||||||| || || ||| | ||||||||||||||| ||||||||||   
Sbjct: 1861 ggtggaaaaccatggcgtggaggcggcgttaatggaggaggtgaagagcttcgtgtaccg 1920

                                                               
Query: 235  ccactacgacgagcatctcaaggataggttctacgcctcggacctcgccaa 285
            ||| ||||||||||| ||  || | |  ||||||||||| |||||||||||
Sbjct: 1921 ccattacgacgagcacctggagaagaaattctacgcctccgacctcgccaa 1971



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>dbj|AP003546.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0672C09
          Length = 145655

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                          
Query: 335    gactgggagaccgcctacttcatccggcaccgtcccgccaacaacgtcgccgacttcccg 394
              ||||||||| || |||||||||||| |||||| |||   |||| || |||||||||||||
Sbjct: 110440 gactgggaggccacctacttcatccagcaccgccccaagaacaccgccgccgacttcccg 110499

                            
Query: 395    gagatcccgccggc 408
              || |||||||||||
Sbjct: 110500 gacatcccgccggc 110513



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 46/50 (92%)
 Strand = Plus / Plus

                                                                
Query: 128    accatggcgcggctccacgaagcctgcaaggactggggcttcttctgggt 177
              |||||||| | ||||||||| ||||| |||||||||||||||||||||||
Sbjct: 109926 accatggcccagctccacgaggcctgtaaggactggggcttcttctgggt 109975



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 91/111 (81%)
 Strand = Plus / Plus

                                                                          
Query: 175    ggtggacagccatggcgtcgacgccgcgctgatggaggaggtgaagcgcttcgtgtatgc 234
              |||||| | ||||||||| || || ||| | ||||||||||||||| ||||||||||   
Sbjct: 110262 ggtggaaaaccatggcgtggaggcggcgttaatggaggaggtgaagagcttcgtgtaccg 110321

                                                                 
Query: 235    ccactacgacgagcatctcaaggataggttctacgcctcggacctcgccaa 285
              ||| ||||||||||| ||  || | |  ||||||||||| |||||||||||
Sbjct: 110322 ccattacgacgagcacctggagaagaaattctacgcctccgacctcgccaa 110372



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                   
Query: 235      ccactacgacgagcatctcaaggataggttctacgcctcggacctcgccaa 285
                ||||||||||||||||||| || | | |||||||||||| |||||||||||
Sbjct: 20475482 ccactacgacgagcatctcgagaacaagttctacgcctccgacctcgccaa 20475432



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>dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0456B03
          Length = 152973

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                 
Query: 235    ccactacgacgagcatctcaaggataggttctacgcctcggacctcgccaa 285
              ||||||||||||||||||| || | | |||||||||||| |||||||||||
Sbjct: 106112 ccactacgacgagcatctcgagaacaagttctacgcctccgacctcgccaa 106062



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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 451    gctcgcagagcggctggccgag 472
              ||||||||||||||||||||||
Sbjct: 394239 gctcgcagagcggctggccgag 394218



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 196     cgccgcgctgatggaggagg 215
               ||||||||||||||||||||
Sbjct: 1570571 cgccgcgctgatggaggagg 1570590



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>gb|AY585706.1| Cyprinus carpio coilin p80 mRNA, partial cds
          Length = 287

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 147 aagcctgcaaggactggggct 167
           |||||||||||||||||||||
Sbjct: 126 aagcctgcaaggactggggct 146



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>gb|AC123044.4| Mus musculus BAC clone RP24-548B7 from chromosome 5, complete sequence
          Length = 184772

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 163    gggcttcttctgggtggacag 183
              |||||||||||||||||||||
Sbjct: 115548 gggcttcttctgggtggacag 115528



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>gb|AY349011.1| Burkholderia cepacia phage Bcep22, complete genome
          Length = 63882

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 187  tggcgtcgacgccgcgctgat 207
            |||||||||||||||||||||
Sbjct: 5245 tggcgtcgacgccgcgctgat 5265



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>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29
          Length = 296500

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 380    gtcgccgacttcccggagatc 400
              |||||||||||||||||||||
Sbjct: 121654 gtcgccgacttcccggagatc 121634



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>dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103
          Length = 1282697

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 220     gcgcttcgtgtatgcccactacgacgagc 248
               |||||||||| ||||| ||||||||||||
Sbjct: 1145380 gcgcttcgtgcatgccaactacgacgagc 1145408



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>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 37      cagagcaagcgatcggtacca 57
               |||||||||||||||||||||
Sbjct: 2607313 cagagcaagcgatcggtacca 2607333



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>gb|AC015604.5|AC015604 Homo sapiens, clone RP11-45D18, complete sequence
          Length = 172914

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 321   tctccggtgaggtagactggg 341
             |||||||||||||||||||||
Sbjct: 33669 tctccggtgaggtagactggg 33689



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>emb|AJ339750.1|HSA339750 Homo sapiens genomic sequence surrounding NotI site, clone NR1-EJ8R
          Length = 693

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 280 cgccaaagacctgctgctgcc 300
           |||||||||||||||||||||
Sbjct: 592 cgccaaagacctgctgctgcc 572



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>dbj|AP000428.3| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1303B4
          Length = 173872

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 321   tctccggtgaggtagactggg 341
             |||||||||||||||||||||
Sbjct: 83026 tctccggtgaggtagactggg 83006



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>gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete sequence
          Length = 412348

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 196    cgccgcgctgatggaggaggtgaag 220
              ||||||||||||||||||| |||||
Sbjct: 240289 cgccgcgctgatggaggagctgaag 240265



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>ref|NM_188968.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 861

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 262 gttctacgcctcggacctcgccaa 285
           |||||||||||| |||||||||||
Sbjct: 510 gttctacgcctccgacctcgccaa 533



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>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 306     aggaatccaaagccgtctcc 325
               ||||||||||||||||||||
Sbjct: 2425130 aggaatccaaagccgtctcc 2425149



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>emb|AL606632.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042L16,
             complete sequence
          Length = 163738

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   cgtcgacgccgcgctgatgg 209
             ||||||||||||||||||||
Sbjct: 79206 cgtcgacgccgcgctgatgg 79187



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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 349    ctacttcatccggcaccgtcccgc 372
              ||||||||||| ||||||||||||
Sbjct: 342616 ctacttcatcctgcaccgtcccgc 342639



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>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome
          Length = 2679306

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 277    cctcgccaaagacctgctgc 296
              ||||||||||||||||||||
Sbjct: 870558 cctcgccaaagacctgctgc 870539



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 190      cgtcgacgccgcgctgatgg 209
                ||||||||||||||||||||
Sbjct: 21265732 cgtcgacgccgcgctgatgg 21265713



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 175      ggtggacagccatggcgtcg 194
                ||||||||||||||||||||
Sbjct: 24920747 ggtggacagccatggcgtcg 24920766



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 190      cgtcgacgccgcgctgatgg 209
                ||||||||||||||||||||
Sbjct: 11388560 cgtcgacgccgcgctgatgg 11388541



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>ref|XM_222251.3| PREDICTED: Rattus norvegicus E1A binding protein p400 (predicted)
            (Ep400_predicted), mRNA
          Length = 11061

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 197  gccgcgctgatggaggaggtgaag 220
            |||| |||||||||||||||||||
Sbjct: 4882 gccgggctgatggaggaggtgaag 4859



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>dbj|AP003541.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0530H05
          Length = 145952

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   ggtggacagccatggcgtcg 194
             ||||||||||||||||||||
Sbjct: 15302 ggtggacagccatggcgtcg 15321



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>dbj|AP006164.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1386G10
          Length = 121827

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   cgtcgacgccgcgctgatgg 209
             ||||||||||||||||||||
Sbjct: 76269 cgtcgacgccgcgctgatgg 76250



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>dbj|AP003369.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1102E12
          Length = 155692

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 149   gcctgcaaggactggggcttcttc 172
             |||||| |||||||||||||||||
Sbjct: 24829 gcctgccaggactggggcttcttc 24852



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>dbj|AP004737.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0072A21
          Length = 158287

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 175    ggtggacagccatggcgtcg 194
              ||||||||||||||||||||
Sbjct: 131830 ggtggacagccatggcgtcg 131849



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>dbj|AK072222.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013165K20, full
           insert sequence
          Length = 1405

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 149 gcctgcaaggactggggcttcttc 172
           |||||| |||||||||||||||||
Sbjct: 244 gcctgccaggactggggcttcttc 267



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>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome
          Length = 2519802

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 277     cctcgccaaagacctgctgc 296
               ||||||||||||||||||||
Sbjct: 2074306 cctcgccaaagacctgctgc 2074325


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,956,645
Number of Sequences: 3902068
Number of extensions: 2956645
Number of successful extensions: 61061
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60595
Number of HSP's gapped (non-prelim): 459
length of query: 486
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 464
effective length of database: 17,147,199,772
effective search space: 7956300694208
effective search space used: 7956300694208
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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