>RBGPR_RAT (Q5U1Z0) Rab3 GTPase-activating protein non-catalytic subunit (Rab3|
           GTPase-activating protein 150 kDa subunit) (Rab3-GAP
           p150) (Rab3-GAP regulatory subunit) (RAB3-GAP150)
          Length = 1386

 Score = 31.6 bits (70), Expect = 0.87
 Identities = 18/35 (51%), Positives = 19/35 (54%)
 Frame = +1

Query: 244 KLLDSLHAAILDHSRAHPSTALPSSPPFEPLPAFS 348
           +L D L    L HSRA P  A  SSP  EPLP  S
Sbjct: 890 QLEDCLILQTLLHSRASPPAAKASSPQTEPLPRLS 924

>RCC2_MOUSE (Q8BK67) Protein RCC2|
          Length = 520

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 383 AGGEGRRPARVEENAGRGSNGGEEGSAVDG 294
           AG +  RP R   ++G GS+G E+G  +DG
Sbjct: 30  AGRKRERPERCSSSSGGGSSGDEDGPELDG 59

>RCC2_HUMAN (Q9P258) Protein RCC2 (Telophase disk protein of 60 kDa) (RCC1-like|
           protein TD-60)
          Length = 522

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 383 AGGEGRRPARVEENAGRGSNGGEEGSAVDG 294
           AG +  RP R   ++G GS+G E+G  +DG
Sbjct: 32  AGRKRERPERCSSSSGGGSSGDEDGLELDG 61

>WA22_MYCTU (P0A686) WAG22 antigen precursor|
          Length = 914

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -3

Query: 386 GAGGEGRRPARVEENAGRGSNGGEEG 309
           GAGG G  P  +  N G G NGGE G
Sbjct: 430 GAGGAGGAPGLIG-NGGNGGNGGESG 454

>WA22_MYCBO (P0A687) WAG22 antigen precursor|
          Length = 914

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -3

Query: 386 GAGGEGRRPARVEENAGRGSNGGEEG 309
           GAGG G  P  +  N G G NGGE G
Sbjct: 430 GAGGAGGAPGLIG-NGGNGGNGGESG 454

>ENH2_HUMAN (Q9N2J9) HERV-H_3q26 provirus ancestral Env polyprotein precursor|
           (Envelope polyprotein) (Env protein HERV-H/p60)
           (HERV-H/env60) [Contains: Surface protein (SU);
           Transmembrane protein (TM)]
          Length = 563

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 247 LLDSLHAAILDHSRAHPSTALPSSPPFEPLPA 342
           L+D+    I   +R  PST LP   P +PL A
Sbjct: 271 LVDAQRFLIYHENRTSPSTQLPHQSPLQPLTA 302

>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)|
           (APOBEC-1-binding protein 1) (ABBP-1)
          Length = 331

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 386 GAGGEGRRPARVEENAGRGSNGGEEGSAVDGWARLWSR 273
           G+GG G R      + G G  GG+  S   G+   W++
Sbjct: 240 GSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQ 277

>KCNC3_RAT (Q01956) Potassium voltage-gated channel subfamily C member 3|
           (Voltage-gated potassium channel subunit Kv3.3)
           (KSHIIID)
          Length = 889

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -3

Query: 386 GAGGEGRRPARVEENAGRGSNGGEEGSAVDGWARLW 279
           GAGGE +R    +   G G   G  G A   W R W
Sbjct: 238 GAGGELKRLCFQDAGGGAGGPAGGPGGAGGTWWRRW 273


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.133    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,266,246
Number of Sequences: 219361
Number of extensions: 254773
Number of successful extensions: 1753
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1745
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)