Clone Information

BLAST Search Result

Clone Name	bast56f04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	KTNA1_STRPU (O61577) Katanin p60 ATPase-containing subunit (EC 3...	34	0.17
2	VE2_HPV38 (Q80910) Regulatory protein E2	33	0.29
3	HERC2_HUMAN (O95714) HECT domain and RCC1-like domain-containing...	33	0.38
4	MBD2_HUMAN (Q9UBB5) Methyl-CpG-binding domain protein 2 (Methyl-...	32	0.65
5	MSA2_PLAF7 (P50498) Merozoite surface antigen 2 precursor (MSA-2...	32	0.85
6	U2AF1_MOUSE (Q9D883) Splicing factor U2AF 35 kDa subunit (U2 aux...	32	0.85
7	BOWEL_DROME (Q9VQU9) Protein bowel (Brother of odd with entrails...	31	1.1
8	TWST1_GORGO (Q8MI06) Twist-related protein 1	31	1.5
9	MBD2_MOUSE (Q9Z2E1) Methyl-CpG-binding domain protein 2 (Methyl-...	31	1.5
10	RLUB_XANCP (Q8P8M6) Ribosomal large subunit pseudouridine syntha...	31	1.5
11	SC10A_CANFA (O46669) Sodium channel protein type 10 alpha subuni...	30	1.9
12	THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1...	30	1.9
13	CDSN_PANTR (Q7YR44) Corneodesmosin precursor (S protein)	30	1.9
14	CDSN_HUMAN (Q15517) Corneodesmosin precursor (S protein)	30	1.9
15	VNUA_PRVKA (P33485) Probable nuclear antigen	30	1.9
16	5E5_RAT (Q63003) 5E5 antigen	30	2.5
17	MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia p...	30	2.5
18	RT03_ARATH (Q95749) Mitochondrial ribosomal protein S3	30	2.5
19	MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia p...	30	2.5
20	GATA4_MOUSE (Q08369) Transcription factor GATA-4 (GATA-binding f...	29	4.2
21	ZC3H3_HUMAN (Q8IXZ2) Zinc finger CCCH-type domain-containing pro...	29	4.2
22	PRR1_ORYSA (Q689G9) Two-component response regulator-like PRR1 (...	29	4.2
23	ADCY5_CANFA (P30803) Adenylate cyclase type 5 (EC 4.6.1.1) (Aden...	29	5.5
24	SMAD7_HUMAN (O15105) Mothers against decapentaplegic homolog 7 (...	29	5.5
25	FLA_LEGMI (P53606) Flagellin	29	5.5
26	SPT5H_BRARE (Q9DDT5) Transcription elongation factor SPT5 (DRB s...	29	5.5
27	PHYB_SORBI (P93527) Phytochrome B	29	5.5
28	TF3C2_HUMAN (Q8WUA4) General transcription factor 3C polypeptide...	29	5.5
29	NUGC_SACOF (Q6ENW0) NAD(P)H-quinone oxidoreductase chain J, chlo...	29	5.5
30	NUGC_SACHY (Q6L396) NAD(P)H-quinone oxidoreductase chain J, chlo...	29	5.5
31	NUGC_ORYSA (P12200) NAD(P)H-quinone oxidoreductase chain J, chlo...	29	5.5
32	NUGC_ORYNI (Q6ENH1) NAD(P)H-quinone oxidoreductase chain J, chlo...	29	5.5
33	NUGC_MAIZE (P19124) NAD(P)H-quinone oxidoreductase chain J, chlo...	29	5.5
34	VE2_HPV36 (P50809) Regulatory protein E2	29	5.5
35	GATA4_RAT (P46152) Transcription factor GATA-4 (GATA-binding fac...	28	7.2
36	PUTA_RHIME (P95629) Bifunctional protein putA [Includes: Proline...	28	7.2
37	DSX_DROME (P23023) Protein doublesex	28	7.2
38	NUGC_WHEAT (Q95H60) NAD(P)H-quinone oxidoreductase chain J, chlo...	28	7.2
39	SPT5H_CAEEL (Q21338) Transcription elongation factor SPT5 (DRB s...	28	7.2
40	IRS1_RAT (P35570) Insulin receptor substrate 1 (IRS-1) (pp185)	28	9.4
41	THAP7_HUMAN (Q9BT49) THAP domain-containing protein 7	28	9.4
42	SPT5H_HUMAN (O00267) Transcription elongation factor SPT5 (hSPT5...	28	9.4
43	TWST1_HYLCO (Q8MIE7) Twist-related protein 1	28	9.4
44	ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B ...	28	9.4
45	YL801_MIMIV (Q5UR61) Hypothetical protein L801	28	9.4
46	TWST1_PANTR (Q8MI03) Twist-related protein 1	28	9.4
47	TWST1_MACTO (Q7JGP2) Twist-related protein 1	28	9.4
48	TWST1_CALJA (Q8MIH1) Twist-related protein 1	28	9.4
49	NOLA1_MOUSE (Q9CY66) H/ACA ribonucleoprotein complex subunit 1 (...	28	9.4
50	MSA2_PLAFG (P19260) Merozoite surface antigen 2 precursor (MSA-2...	28	9.4
51	GATA_BRUSU (Q8FW67) Glutamyl-tRNA(Gln) amidotransferase subunit ...	28	9.4
52	GATA_BRUME (Q8YC57) Glutamyl-tRNA(Gln) amidotransferase subunit ...	28	9.4
53	TWST1_MOUSE (P26687) Twist-related protein 1 (M-twist)	28	9.4
54	SPT5H_PONPY (Q5R405) Transcription elongation factor SPT5 (DRB s...	28	9.4
55	PRIL_HALMA (Q5UYQ8) Probable DNA primase large subunit (EC 2.7.7.-)	28	9.4
56	PKAB_STRCO (P54740) Serine/threonine protein kinase pkaB (EC 2.7...	28	9.4
57	CAZ_DROME (Q27294) RNA-binding protein cabeza (Sarcoma-associate...	28	9.4
58	TWST1_HUMAN (Q15672) Twist-related protein 1 (H-twist)	28	9.4

>KTNA1_STRPU (O61577) Katanin p60 ATPase-containing subunit (EC 3.6.4.3)|
           (Katanin p60 subunit) (p60 katanin)
          Length = 516

 Score = 33.9 bits (76), Expect = 0.17
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -1

Query: 182 RLTAPRSPQHSQPGTTRNGR--TEKRWRASAGGAAPVEAGSSGGSCGADRGRQRG 24
           R + P  P +  PG  R GR  +++R  A +GG      G  GG+ G+D+ + RG
Sbjct: 139 RRSEPSKPANRAPGNDRGGRGPSDRRGDARSGG------GGRGGARGSDKDKNRG 187

to top

>VE2_HPV38 (Q80910) Regulatory protein E2|
          Length = 441

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
 Frame = -1

Query: 239 PQTSVS--KPVSILIQPKIARRLTAP-------RSPQHSQPGTTRNGRTEKRWRAS-AGG 90
           P TSVS  +P S   + +  R+ ++P       R  Q    GT R  ++  R R++  GG
Sbjct: 220 PSTSVSPERPPSQTAR-RYGRKASSPSTTSRRQRKGQRETTGTQRRRKSRSRSRSTNRGG 278

Query: 89  AAPVEAGSSGGSCGADRGRQRGDGEEQ 9
                + S G S    RGR+RG G+ +
Sbjct: 279 RDTRRSSSRGSSVSPTRGRRRGGGDSR 305

to top

>HERC2_HUMAN (O95714) HECT domain and RCC1-like domain-containing protein 2|
          Length = 4834

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = +3

Query: 264  NIYFRNKSLFHMVGAESTLPAVDHAA---LDNSDTEVSEVVECDSTVVEVLEKSASEEV 431
            NI F  KSL    G  S+LP V+      LD+SD +V+E+ + D+   E  ++   E+V
Sbjct: 2474 NIEFALKSLTGASGNASSLPGVEALVGWLLDHSDIQVTELSDADTVSDEYSDEEVVEDV 2532

to top

>MBD2_HUMAN (Q9UBB5) Methyl-CpG-binding domain protein 2 (Methyl-CpG-binding|
           protein MBD2) (Demethylase) (DMTase)
          Length = 411

 Score = 32.0 bits (71), Expect = 0.65
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = -1

Query: 143 GTTRNGRTEKRWRASAGGAAPVEAGSSGGSCGADRGRQRGDG 18
           G    GR   RW+         +AG  GG CG  RGR RG G
Sbjct: 53  GARGGGRGRGRWK---------QAGRGGGVCGRGRGRGRGRG 85

to top

>MSA2_PLAF7 (P50498) Merozoite surface antigen 2 precursor (MSA-2) (45 kDa|
           merozoite surface antigen)
          Length = 272

 Score = 31.6 bits (70), Expect = 0.85
 Identities = 22/62 (35%), Positives = 29/62 (46%)
 Frame = -1

Query: 188 ARRLTAPRSPQHSQPGTTRNGRTEKRWRASAGGAAPVEAGSSGGSCGADRGRQRGDGEEQ 9
           A  ++  RS   S+P T   G        SAGG+A    GS+GGS G   G   G+G + 
Sbjct: 34  AYNMSIRRSMAESKPSTGAGGSAG----GSAGGSA---GGSAGGSAGGSAGSGDGNGADA 86

Query: 8   WG 3
            G
Sbjct: 87  EG 88

to top

>U2AF1_MOUSE (Q9D883) Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor|
           35 kDa subunit) (U2 snRNP auxiliary factor small
           subunit)
          Length = 238

 Score = 31.6 bits (70), Expect = 0.85
 Identities = 20/67 (29%), Positives = 28/67 (41%)
 Frame = -1

Query: 203 IQPKIARRLTAPRSPQHSQPGTTRNGRTEKRWRASAGGAAPVEAGSSGGSCGADRGRQRG 24
           I  ++ R L   R  +H     +R  R+  R R   GG      G  GG  G +R R+R 
Sbjct: 176 ISRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGG------GGGGGGGGRERDRRRS 229

Query: 23  DGEEQWG 3
              E+ G
Sbjct: 230 RDRERSG 236

to top

>BOWEL_DROME (Q9VQU9) Protein bowel (Brother of odd with entrails limited)|
          Length = 744

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 104 ASAGGAAPVEAGSSGGSCGADRGRQRGDGEEQ 9
           A  GG  P  A  +GGS G+D G Q G+G+ +
Sbjct: 39  AVGGGGLPGAADRNGGSGGSDGGSQNGNGDSR 70

to top

>TWST1_GORGO (Q8MI06) Twist-related protein 1|
          Length = 203

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -1

Query: 161 PQHSQPGT-TRNGRTEKRWRASAGGAAPVEAGSSGGSCGADRGRQRGDGE 15
           P   QP +  R GR  +  R SAGG A     +SGG+ G D       G+
Sbjct: 24  PDRQQPPSGKRGGRKRRSSRRSAGGGAGPGGAASGGAGGGDEPGSPAQGK 73

to top

>MBD2_MOUSE (Q9Z2E1) Methyl-CpG-binding domain protein 2 (Methyl-CpG-binding|
           protein MBD2)
          Length = 414

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = -1

Query: 143 GTTRNGRTEKRWRASAGGAAPVEAGSSGGSCGADRGRQRGDG 18
           G    GR   RW+ +A G         GG CG  RGR RG G
Sbjct: 53  GARGGGRGRGRWKQAARG---------GGVCGRGRGRGRGRG 85

to top

>RLUB_XANCP (Q8P8M6) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 492

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -1

Query: 176 TAPRSPQHSQPGTTRNGRTEKRWRASAGGAAPVEAGSSGGSCGADRGRQRGDGEEQ 9
           T P   +++ PG    G+     +   GGA P   G   G+ G  +G+ +G G+ Q
Sbjct: 395 TGPSGHRNAGPGGAGTGQPRPYAKKGPGGARPGAGGQGRGAAGG-QGQSQGQGQGQ 449

to top

>SC10A_CANFA (O46669) Sodium channel protein type 10 alpha subunit (Sodium channel|
            protein type X alpha subunit) (Voltage-gated sodium
            channel alpha subunit Nav1.8) (NaNG)
          Length = 1962

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = -1

Query: 176  TAPRSPQHSQPGTTRNGRTEKRWRASAGGAAPVEAG----SSGGS 54
            TAPRSP             +++W+  A   AP E G    SSGGS
Sbjct: 1050 TAPRSPGSGMSSEDLASYVDEKWKDEAVAQAPAEGGDDSSSSGGS 1094

to top

>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)|
           (Transcriptional coactivator Aly/REF) (bZIP-enhancing
           factor BEF)
          Length = 256

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = -1

Query: 221 KPVSILIQPKIARRLTAPRSPQHSQPGTTRNGRTEKRWRASAGGAAPVEAGSSGGSCGAD 42
           +P++I +   +  ++ A R P  S     R G T  R     GG      G+ GG+ G  
Sbjct: 173 RPMNIQL---VTSQIDAQRRPAQS---VNRGGMTRNRGAGGFGGGGGTRRGTRGGARGRG 226

Query: 41  RGRQRGDGEE 12
           RG  R   ++
Sbjct: 227 RGAGRNSKQQ 236

to top

>CDSN_PANTR (Q7YR44) Corneodesmosin precursor (S protein)|
          Length = 529

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
 Frame = -1

Query: 263 ILKQSILLPQTSVSKPVSILIQP-KIARRLTAPRSPQ----------HSQPGTTRNGRTE 117
           +L   +LLP T ++K +     P K   R+T+P  P            S  G++ +G + 
Sbjct: 20  LLLAGLLLPGT-LAKSIGTFSDPCKDPMRITSPNDPCLTGKGDSSGFSSYSGSSSSGSSI 78

Query: 116 KRWRASAGGAAPVEAGSS---GGSCGA 45
              R+S GG++   +GSS   GGS G+
Sbjct: 79  SSARSSGGGSSGSSSGSSIAQGGSAGS 105

to top

>CDSN_HUMAN (Q15517) Corneodesmosin precursor (S protein)|
          Length = 529

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
 Frame = -1

Query: 263 ILKQSILLPQTSVSKPVSILIQP-KIARRLTAPRSPQ----------HSQPGTTRNGRTE 117
           +L   +LLP T ++K +     P K   R+T+P  P            S  G++ +G + 
Sbjct: 20  LLLAGLLLPGT-LAKSIGTFSDPCKDPTRITSPNDPCLTGKGDSSGFSSYSGSSSSGSSI 78

Query: 116 KRWRASAGGAAPVEAGSS---GGSCGA 45
              R+S GG++   +GSS   GGS G+
Sbjct: 79  SSARSSGGGSSGSSSGSSIAQGGSAGS 105

to top

>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
 Frame = -1

Query: 173  APRSPQHSQPGTTRNGRTEKRWRASAGGAAPVEAGSSGGSCGAD------RGRQRGDGEE 12
            APR       G  R GR E R  A+A GAA   A + G   GA       RGR    GE 
Sbjct: 1460 APRGGGGGPGGGGRAGRGEVRVAAAAAGAAEAAAAAEGALSGAAPAGLSLRGRPAVPGEA 1519

Query: 11   Q 9
            +
Sbjct: 1520 E 1520

to top

>5E5_RAT (Q63003) 5E5 antigen|
          Length = 825

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
 Frame = -1

Query: 173 APRSPQHSQPG-----TTRNGRTEK-RWRASAGGAAPVEAGSSGGSCGADRGRQRGDG 18
           AP +  H+ PG      T  GR  +  WR    G     +G   G  G  RG +RG G
Sbjct: 544 APTAHAHAVPGPGPAAATLGGRGRRGSWRGGRRGGGAGASGGGRGGRGRGRGGRRGSG 601



 Score = 28.5 bits (62), Expect = 7.2
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
 Frame = -1

Query: 167 RSPQHSQPGTTRNGRTEKRWRASAG--GA-APVEAGSSGGSCGADRGRQRGDGEEQWG 3
           RSP H   G           R S G  GA  P   G   G  G+D  + RG+G  +WG
Sbjct: 270 RSPGHEGEGGGEWPGISGERRESPGEWGADVPRGRGEGAGEWGSDVPKDRGEGGREWG 327

to top

>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43) (Homologous to ALR protein)
          Length = 4911

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -1

Query: 278  PKINVILKQSILLPQTSVSKPVSILIQPKIARRLTAPRSPQ--HSQPGTTRNGRTEKRWR 105
            PK++  +K+ +L P T  S   S   Q  +   L AP S Q  HS+    R  +TE  W+
Sbjct: 4713 PKMSAHVKRFVLRPHTLNSTSTSKSFQSTVTGELNAPYSKQFVHSKSSQYRKMKTE--WK 4770

Query: 104  AS 99
            ++
Sbjct: 4771 SN 4772

to top

>RT03_ARATH (Q95749) Mitochondrial ribosomal protein S3|
          Length = 556

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -1

Query: 170 PRSPQH-SQPGTTRNGRTEKRWRASAGGAAPVEAGSSGGSCGADRGRQRGDG 18
           PR P+   +   TR G+ + RW  + G A P+E   S      +R   RG G
Sbjct: 76  PRRPRRLKRREKTRPGKEKGRWWTTFGKAGPIECLHSSDDTEEERNEVRGRG 127

to top

>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43)
          Length = 4903

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = -1

Query: 278  PKINVILKQSILLPQTSVSKPVSILIQPKIARRLTAPRSPQHSQPGTTRNGRTEKRWRAS 99
            PK++  +K+ +L P T  S   S   Q  +   L AP S Q     +++  R +  W+++
Sbjct: 4705 PKMSAHVKRFVLRPHTLNSTSTSKSFQSTVTGELNAPYSKQFVHSKSSQYRRMKTEWKSN 4764

to top

>GATA4_MOUSE (Q08369) Transcription factor GATA-4 (GATA-binding factor 4)|
          Length = 440

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -1

Query: 170 PRSPQHSQPGTTRNGRTEKRWRASAGGAAPVEA---GSSGGSCGADRGRQRGDGEEQWG 3
           P SP+ S PGTT +        A+A  AA  EA   GS GG+ GA        G EQ+G
Sbjct: 103 PVSPRFSFPGTTGS------LAAAAAAAAAREAAAYGSGGGAAGAGLA-----GREQYG 150

to top

>ZC3H3_HUMAN (Q8IXZ2) Zinc finger CCCH-type domain-containing protein 3|
          Length = 948

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 246 TTPPDFSIKTCFYLDSAEDCSPIDSPEIPATLPAW 142
           T P    IKT + +      SP+ +P  P +LP+W
Sbjct: 529 TAPTSKVIKTRYRIVKKTPASPLSAPPFPLSLPSW 563

to top

>PRR1_ORYSA (Q689G9) Two-component response regulator-like PRR1|
           (Pseudo-response regulator 1) (OsPRR1)
          Length = 518

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -3

Query: 384 HIPRLLRPQYHCYPTPHDLLQVMWIQPPPCGKVIYSENKCYTQ 256
           H P+ L PQY+ YP  H +  +   Q  P G  I S N+  TQ
Sbjct: 380 HTPQTLLPQYNVYPQCHGVSMMPPFQYNPAGMSIQS-NQLPTQ 421

to top

>ADCY5_CANFA (P30803) Adenylate cyclase type 5 (EC 4.6.1.1) (Adenylate cyclase|
           type V) (ATP pyrophosphate-lyase 5) (Adenylyl cyclase 5)
           (Ca(2+)-inhibitable adenylyl cyclase)
          Length = 1265

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -1

Query: 149 QPGTTRNGRTEKRWRASAGGAAPVEAGSSGGSCGADRGRQRGDG 18
           +P +   G  E+R R  A      EAG+ GG    DRG + GDG
Sbjct: 165 RPRSVELGLDERRGRGRAEPEPEAEAGAPGG----DRGARDGDG 204

to top

>SMAD7_HUMAN (O15105) Mothers against decapentaplegic homolog 7 (SMAD 7)|
           (Mothers against DPP homolog 7) (Smad7) (hSMAD7)
          Length = 426

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 140 TTRNGRTEKRWRASAGGAAPVEAGSSGGSCGADRGRQRGDG 18
           T R+    + WR+ A G    E G+ GG  G   G  RG+G
Sbjct: 4   TKRSALVRRLWRSRAPGGEDEEEGAGGGGGG---GELRGEG 41

to top

>FLA_LEGMI (P53606) Flagellin|
          Length = 474

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -1

Query: 152 SQPGTTRNGRTEKRWRASAGGAAPVEAGSSGGSCGAD 42
           SQ GT  +G        S GG AP+   SS G  G D
Sbjct: 174 SQTGTAVSGAAATDITISLGGGAPISINSSAGFVGPD 210

to top

>SPT5H_BRARE (Q9DDT5) Transcription elongation factor SPT5 (DRB|
           sensitivity-inducing factor large subunit) (DSIF large
           subunit) (Protein foggy)
          Length = 1084

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 18/53 (33%), Positives = 20/53 (37%)
 Frame = -1

Query: 173 APRSPQHSQPGTTRNGRTEKRWRASAGGAAPVEAGSSGGSCGADRGRQRGDGE 15
           AP SP+ S P                GG  P   G  GG  G  RGR R D +
Sbjct: 662 APMSPRISSP------------MHPGGGGQPQRGGGGGGGGGMGRGRGRRDND 702

to top

>PHYB_SORBI (P93527) Phytochrome B|
          Length = 1178

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = -1

Query: 182 RLTAPRSPQHSQPGTTRNGRTEKRWRASAGGAAPVEAGSSGGSCGADRG 36
           R T  RSP  ++P   R+        + + G +   AG  GG  G   G
Sbjct: 6   RATPTRSPSSARPEAPRHAHHHHHHHSQSSGGSTSRAGGGGGGGGGGGG 54

to top

>TF3C2_HUMAN (Q8WUA4) General transcription factor 3C polypeptide 2|
           (Transcription factor IIIC-beta subunit) (TF3C-beta)
           (TFIIIC 110 kDa subunit) (TFIIIC110)
          Length = 911

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 215 VSILIQPKIARRLTAPRSPQHSQPGTTRNGRTEK 114
           +S L QP ++  ++    P+ S+PG  R GRT K
Sbjct: 76  LSRLEQPDLSSEMSKVSKPRASKPGRKRGGRTRK 109

to top

>NUGC_SACOF (Q6ENW0) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain J)
           (NADH-plastoquinone oxidoreductase subunit J)
          Length = 159

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 14/78 (17%)
 Frame = -3

Query: 285 IYSENKCYTQTEYTTPPDFSIKTCFYL-------DSAED-CSPI----DSPEIPATLPAW 142
           +Y  N   +Q  Y   P  S+ + ++L       D+ E+ C  +    D+P IP+    W
Sbjct: 46  VYGYNYLRSQCAYDVAPGGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRIPSVFWVW 105

Query: 141 YDEEWADRE--EMEGVSW 94
              ++ +RE  +M G+S+
Sbjct: 106 RSADFQERESYDMVGISY 123

to top

>NUGC_SACHY (Q6L396) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain J)
           (NADH-plastoquinone oxidoreductase subunit J)
          Length = 159

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 14/78 (17%)
 Frame = -3

Query: 285 IYSENKCYTQTEYTTPPDFSIKTCFYL-------DSAED-CSPI----DSPEIPATLPAW 142
           +Y  N   +Q  Y   P  S+ + ++L       D+ E+ C  +    D+P IP+    W
Sbjct: 46  VYGYNYLRSQCAYDVAPGGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRIPSVFWVW 105

Query: 141 YDEEWADRE--EMEGVSW 94
              ++ +RE  +M G+S+
Sbjct: 106 RSADFQERESYDMVGISY 123

to top

>NUGC_ORYSA (P12200) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain J)
           (NADH-plastoquinone oxidoreductase subunit J)
          Length = 159

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 14/78 (17%)
 Frame = -3

Query: 285 IYSENKCYTQTEYTTPPDFSIKTCFYL-------DSAED-CSPI----DSPEIPATLPAW 142
           +Y  N   +Q  Y   P  S+ + ++L       D+ E+ C  +    D+P IP+    W
Sbjct: 46  VYGYNYLRSQCAYDVAPGGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRIPSVFWIW 105

Query: 141 YDEEWADRE--EMEGVSW 94
              ++ +RE  +M G+S+
Sbjct: 106 RSSDFQERESFDMVGISY 123

to top

>NUGC_ORYNI (Q6ENH1) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain J)
           (NADH-plastoquinone oxidoreductase subunit J)
          Length = 159

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 14/78 (17%)
 Frame = -3

Query: 285 IYSENKCYTQTEYTTPPDFSIKTCFYL-------DSAED-CSPI----DSPEIPATLPAW 142
           +Y  N   +Q  Y   P  S+ + ++L       D+ E+ C  +    D+P IP+    W
Sbjct: 46  VYGYNYLRSQCAYDVAPGGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRIPSVFWIW 105

Query: 141 YDEEWADRE--EMEGVSW 94
              ++ +RE  +M G+S+
Sbjct: 106 RSSDFQERESFDMVGISY 123

to top

>NUGC_MAIZE (P19124) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain J)
           (NADH-plastoquinone oxidoreductase subunit J)
          Length = 159

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 14/78 (17%)
 Frame = -3

Query: 285 IYSENKCYTQTEYTTPPDFSIKTCFYL-------DSAED-CSPI----DSPEIPATLPAW 142
           +Y  N   +Q  Y   P  S+ + ++L       D+ E+ C  +    D+P IP+    W
Sbjct: 46  VYGYNYLRSQCAYDVAPGGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRIPSVFWVW 105

Query: 141 YDEEWADRE--EMEGVSW 94
              ++ +RE  +M G+S+
Sbjct: 106 RSADFQERESYDMVGISY 123

to top

>VE2_HPV36 (P50809) Regulatory protein E2|
          Length = 509

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 19/48 (39%), Positives = 23/48 (47%)
 Frame = -1

Query: 167 RSPQHSQPGTTRNGRTEKRWRASAGGAAPVEAGSSGGSCGADRGRQRG 24
           RSP  S   TT N R+  R   +    A    G+ GGS G   GR+RG
Sbjct: 329 RSPSTSSSTTTTNKRSRVRAETTGSRGARGGRGARGGSGG---GRRRG 373

to top

>GATA4_RAT (P46152) Transcription factor GATA-4 (GATA-binding factor 4)|
           (DNA-binding protein GATA-GT2)
          Length = 440

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -1

Query: 170 PRSPQHSQPGTTRNGRTEKRWRASAGGAAPVEA---GSSGGSCGADRGRQRGDGEEQWG 3
           P SP+ S PGTT +        A+A  AA  EA    SSGG+ GA        G EQ+G
Sbjct: 103 PVSPRFSFPGTTGS------LAAAAAAAAAREAAAYSSSGGAAGAGLA-----GREQYG 150

to top

>PUTA_RHIME (P95629) Bifunctional protein putA [Includes: Proline dehydrogenase|
            (EC 1.5.99.8) (Proline oxidase);
            Delta-1-pyrroline-5-carboxylate dehydrogenase (EC
            1.5.1.12) (P5C dehydrogenase)]
          Length = 1224

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 17/44 (38%), Positives = 19/44 (43%)
 Frame = -1

Query: 176  TAPRSPQHSQPGTTRNGRTEKRWRASAGGAAPVEAGSSGGSCGA 45
            TAP  PQHS   T        +W    G  A VEA  + GS  A
Sbjct: 1025 TAPVPPQHSSVHTDPVLLDFAKWLDGKGARAEVEAARNAGSSSA 1068

to top

>DSX_DROME (P23023) Protein doublesex|
          Length = 549

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
 Frame = -1

Query: 176 TAPRSPQHSQPGTTRNGRTEKRWRASAGGAAPVEA---------GSSGGSCGADRGRQRG 24
           TA RSP HS  G +    T     +S+GG AP  +         GSSGG  G   G   G
Sbjct: 231 TALRSPPHSDHGGSVGPAT-----SSSGGGAPSSSNAAAATSSNGSSGGGGGGGGGSSGG 285

to top

>NUGC_WHEAT (Q95H60) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain J)
           (NADH-plastoquinone oxidoreductase subunit J)
          Length = 159

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 14/78 (17%)
 Frame = -3

Query: 285 IYSENKCYTQTEYTTPPDFSIKTCFYL-------DSAED-CSPI----DSPEIPATLPAW 142
           +Y  N   +Q  Y   P  S+ + ++L       D+ E+ C  +    D+P IP+    W
Sbjct: 46  VYGYNYLRSQCAYDVAPGGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRIPSVFWIW 105

Query: 141 YDEEWADRE--EMEGVSW 94
              ++ +RE  +M G+S+
Sbjct: 106 RSADFQERESYDMVGISY 123

to top

>SPT5H_CAEEL (Q21338) Transcription elongation factor SPT5 (DRB|
           sensitivity-inducing factor large subunit) (DSIF large
           subunit)
          Length = 1208

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
 Frame = -1

Query: 227 VSKPVSILIQ-------PKIARRLTAPR---SPQHSQPG-TTRNGRTEKRWRASAGGAAP 81
           V KP  +++Q         +  R+ +P    SP+HS  G T R+ +     R S+GG  P
Sbjct: 646 VCKPKQLILQGAKKTTSTPMVSRMASPNPMASPRHSSGGMTPRSPQDGMSSRGSSGGQTP 705

Query: 80  VEAGSSGGSCGADRGRQRGDGEEQ 9
            + G  G      RG   G   +Q
Sbjct: 706 RQGGGGG------RGGHFGTANQQ 723

to top

>IRS1_RAT (P35570) Insulin receptor substrate 1 (IRS-1) (pp185)|
          Length = 1235

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 25/73 (34%), Positives = 32/73 (43%)
 Frame = -1

Query: 233 TSVSKPVSILIQPKIARRLTAPRSPQHSQPGTTRNGRTEKRWRASAGGAAPVEAGSSGGS 54
           +S S P+S+ +      R     +P  SQ G TR  RTE     S    +P  A   GG 
Sbjct: 269 SSCSNPISVPL------RRHHLNNPPPSQVGLTRRSRTE-----SITATSP--ASMVGGK 315

Query: 53  CGADRGRQRGDGE 15
            G+ R R   DGE
Sbjct: 316 PGSFRVRASSDGE 328

to top

>THAP7_HUMAN (Q9BT49) THAP domain-containing protein 7|
          Length = 309

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 3/97 (3%)
 Frame = -3

Query: 426 LRWHSFPALLQLWNHIPRLLRPQYHCYPTPHDLLQVMWIQPPPCGKVIYSENKCYTQTEY 247
           L+  + P + + ++ + R  + + H YP            PP   ++     +C      
Sbjct: 84  LKEGAVPTIFESFSKLRRTTKTKGHSYPPG----------PPEVSRLRRCRKRCSEGRGP 133

Query: 246 TTP---PDFSIKTCFYLDSAEDCSPIDSPEIPATLPA 145
           TTP   P  +  TCF         P++    PATLPA
Sbjct: 134 TTPFSPPPPADVTCF---------PVEEASAPATLPA 161

to top

>SPT5H_HUMAN (O00267) Transcription elongation factor SPT5 (hSPT5) (DRB|
           sensitivity-inducing factor large subunit) (DSIF large
           subunit) (DSIF p160) (Tat-cotransactivator 1 protein)
           (Tat-CT1 protein)
          Length = 1087

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 20/53 (37%), Positives = 21/53 (39%)
 Frame = -1

Query: 173 APRSPQHSQPGTTRNGRTEKRWRASAGGAAPVEAGSSGGSCGADRGRQRGDGE 15
           AP SP+ S P              SAGG         GGS G  RGR R D E
Sbjct: 663 APMSPRISSP-----------MHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNE 704

to top

>TWST1_HYLCO (Q8MIE7) Twist-related protein 1|
          Length = 204

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = -1

Query: 161 PQHSQPGT-TRNGRTEKRWRASAGGAAPVEAGSSGGSCGADRGRQRGDGE 15
           P   QP +  R GR  +  R SAGG A     + GG  G D       G+
Sbjct: 24  PDRQQPPSGKRGGRKRRSSRRSAGGGAGPGGAAGGGVGGGDEPGSPAQGK 73

to top

>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)|
           (CArG-binding factor-A) (CBF-A)
          Length = 285

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 11/58 (18%)
 Frame = -1

Query: 149 QPGTTRNGRTEKRWRASAGGAAPVE-----------AGSSGGSCGADRGRQRGDGEEQ 9
           QP  T  G TE    A+  G APVE           AGS GG+  A  G Q G   +Q
Sbjct: 8   QPMET-TGATENGHEAAPEGEAPVEPSAAAAAPAASAGSGGGTTTAPSGNQNGAEGDQ 64

to top

>YL801_MIMIV (Q5UR61) Hypothetical protein L801|
          Length = 131

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 231 SLGE*YTLFEYNIYFRNKSLFHMVGAE 311
           SLG  Y +    IYFRN S+FH  G E
Sbjct: 65  SLGGFYLVSNDPIYFRNLSIFHARGVE 91

to top

>TWST1_PANTR (Q8MI03) Twist-related protein 1|
          Length = 201

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = -1

Query: 161 PQHSQPGT-TRNGRTEKRWRASAGGAAPVEAGSSGGSCGADRGRQRGDGE 15
           P   QP +  R GR  +  R SAGG A     + GG  G D       G+
Sbjct: 24  PDRQQPPSGKRGGRKRRSSRRSAGGGAGPGGAAGGGVGGGDEPGSPAQGK 73

to top

>TWST1_MACTO (Q7JGP2) Twist-related protein 1|
          Length = 201

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = -1

Query: 161 PQHSQPGT-TRNGRTEKRWRASAGGAAPVEAGSSGGSCGADRGRQRGDGE 15
           P   QP +  R GR  +  R SAGG A     + GG  G D       G+
Sbjct: 24  PDRQQPPSGKRGGRKRRSSRRSAGGGAGPGGAAGGGVGGGDEPGSPAQGK 73

to top

>TWST1_CALJA (Q8MIH1) Twist-related protein 1|
          Length = 203

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = -1

Query: 161 PQHSQPGT-TRNGRTEKRWRASAGGAAPVEAGSSGGSCGADRGRQRGDGE 15
           P   QP +  R GR  +  R SAGG A     + GG  G D       G+
Sbjct: 24  PDRQQPQSGKRGGRKRRSSRRSAGGGAGPGGAAGGGVGGGDEPGSPAQGK 73

to top

>NOLA1_MOUSE (Q9CY66) H/ACA ribonucleoprotein complex subunit 1 (Nucleolar|
           protein family A member 1) (snoRNP protein GAR1)
          Length = 231

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -1

Query: 143 GTTRNGRTEKRWRASAGGAAPVEAGSSGGSCGADRGRQRG 24
           G  R G +   +R   GG      G  GG  G+ RG  RG
Sbjct: 19  GFNRGGGSNNHFRGGGGGGGGSFRGGGGGGGGSFRGGGRG 58

to top

>MSA2_PLAFG (P19260) Merozoite surface antigen 2 precursor (MSA-2) (Allelic|
           form 2) (Membrane protein PF7)
          Length = 287

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 101 SAGGAAPVEAG-SSGGSCGADRGRQRGDGE 15
           SAGG+A   AG S+GGS G   G   G G+
Sbjct: 79  SAGGSAGGSAGGSAGGSAGGSAGGSAGSGD 108

to top

>GATA_BRUSU (Q8FW67) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)|
           (Glu-ADT subunit A)
          Length = 493

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -1

Query: 140 TTRNGRTEKRWRASAGGAAPVEAGSSGGSCGA 45
           T+  G  +  WRA    A  V  GSSGGS  A
Sbjct: 135 TSYYGPVKNPWRAKGSNADLVPGGSSGGSAAA 166

to top

>GATA_BRUME (Q8YC57) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)|
           (Glu-ADT subunit A)
          Length = 493

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -1

Query: 140 TTRNGRTEKRWRASAGGAAPVEAGSSGGSCGA 45
           T+  G  +  WRA    A  V  GSSGGS  A
Sbjct: 135 TSYYGPVKNPWRAKGSNADLVPGGSSGGSAAA 166

to top

>TWST1_MOUSE (P26687) Twist-related protein 1 (M-twist)|
          Length = 206

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -1

Query: 161 PQHSQPGTTRNGRTEKRW-RASAGGAAPVEAGSSGGSCGADRGRQRGDGE 15
           P   QP + + G  ++R  R SAGG+A     + GG  G D       G+
Sbjct: 24  PDRQQPASGKRGARKRRSSRRSAGGSAGPGGATGGGIGGGDEPGSPAQGK 73

to top

>SPT5H_PONPY (Q5R405) Transcription elongation factor SPT5 (DRB|
           sensitivity-inducing factor large subunit) (DSIF large
           subunit)
          Length = 1083

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 20/53 (37%), Positives = 21/53 (39%)
 Frame = -1

Query: 173 APRSPQHSQPGTTRNGRTEKRWRASAGGAAPVEAGSSGGSCGADRGRQRGDGE 15
           AP SP+ S P              SAGG         GGS G  RGR R D E
Sbjct: 659 APMSPRISSP-----------MHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNE 700

to top

>PRIL_HALMA (Q5UYQ8) Probable DNA primase large subunit (EC 2.7.7.-)|
          Length = 358

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 246 TTPPDFSIKTCFYLDSAEDCSPIDSPEIPATLP-AWYDEEWADREEMEGVSW 94
           T+P ++S   C  + S  DC  +D      + P  +Y+++  D +E E V W
Sbjct: 296 TSPTEYSTPACSTMQSYGDCVNMDDLCEAISHPMGYYEQKLDDTDEEELVDW 347

to top

>PKAB_STRCO (P54740) Serine/threonine protein kinase pkaB (EC 2.7.11.1)|
          Length = 417

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -1

Query: 173 APRSPQHSQPGTTRNGRTEKRWRASAG-GAAPVEAGSSGGSCGADRGRQRGDGEE 12
           APR+    +PG+ RN    +R R + G GA  + A    G+  A  G + G G +
Sbjct: 353 APRASGAPRPGSARNRAATRRRRIAVGAGAVALVAAIGVGTWLATGGDEDGGGPQ 407

to top

>CAZ_DROME (Q27294) RNA-binding protein cabeza (Sarcoma-associated RNA-binding|
           fly homolog) (P19)
          Length = 399

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -1

Query: 101 SAGGAAPVEAGSSGGSCGADRGRQRGDG 18
           S+GG      G  GG  G DRG  RG G
Sbjct: 308 SSGGGGGGGYGGGGGGGGYDRGNDRGSG 335

to top

>TWST1_HUMAN (Q15672) Twist-related protein 1 (H-twist)|
          Length = 202

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = -1

Query: 161 PQHSQPGT-TRNGRTEKRWRASAGGAAPVEAGSSGGSCGADRGRQRGDGE 15
           P   QP +  R GR  +  R SAGG A     + GG  G D       G+
Sbjct: 24  PDRQQPPSGKRGGRKRRSSRRSAGGGAGPGGAAGGGVGGGDEPGSPAQGK 73


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,411,306
Number of Sequences: 219361
Number of extensions: 1140638
Number of successful extensions: 4775
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 4379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4724
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result