ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast56f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC136964.2| Sus scrofa domestica clone RP44-154L9, complete s... 46 0.094
2emb|BX470162.9| Zebrafish DNA sequence from clone CH211-216L23 i... 46 0.094
3gb|AC122688.5| Homo sapiens 12 BAC RP11-158L12 (Roswell Park Can... 44 0.37
4gb|AC133599.3| Mus musculus BAC clone RP24-390N10 from 6, comple... 44 0.37
5gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 42 1.5
6emb|BX927334.17| Zebrafish DNA sequence from clone CH211-112H5 i... 42 1.5
7emb|BX842578.1| Mycobacterium tuberculosis H37Rv complete genome... 42 1.5
8emb|BX248341.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 42 1.5
9gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.5
10gb|AC134437.3| Mus musculus BAC clone RP24-450H12 from chromosom... 42 1.5
11gb|AC174468.2| Medicago truncatula chromosome 2 BAC clone mth2-8... 42 1.5
12ref|NM_117265.1| Arabidopsis thaliana unknown protein AT4G11950 ... 40 5.8
13ref|XM_511263.1| PREDICTED: Pan troglodytes similar to hypotheti... 40 5.8
14ref|XM_466666.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.8
15gb|BC073334.1| Xenopus laevis growth factor Livertine, mRNA (cDN... 40 5.8
16ref|XM_612397.2| PREDICTED: Bos taurus similar to kelch-like 23 ... 40 5.8
17gb|AY550387.1| Salmo salar clone Hae250F microsatellite sequence 40 5.8
18gb|AC154581.2| Mus musculus BAC clone RP23-381G5 from chromosome... 40 5.8
19ref|XM_549013.2| PREDICTED: Canis familiaris similar to TSPY-lik... 40 5.8
20gb|AC124499.3| Mus musculus BAC clone RP24-68G23 from chromosome... 40 5.8
21gb|AC117252.3| Mus musculus BAC clone RP24-381C17 from chromosom... 40 5.8
22gb|DQ446824.1| Arabidopsis thaliana clone pENTR221-At4g11950 hyp... 40 5.8
23emb|AL391666.5| Human DNA sequence from clone RP13-130D24 on chr... 40 5.8
24gb|AC162382.8| Mus musculus 6 BAC RP24-398M13 (Roswell Park Canc... 40 5.8
25emb|AL161533.2|ATCHRIV33 Arabidopsis thaliana DNA chromosome 4, ... 40 5.8
26emb|AL078606.1|ATT26M18 Arabidopsis thaliana DNA chromosome 4, B... 40 5.8
27emb|AL049638.1|ATF16J13 Arabidopsis thaliana DNA chromosome 4, B... 40 5.8
28gb|AC114967.2| Homo sapiens chromosome 5 clone RP11-301A5, compl... 40 5.8
29dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 40 5.8
30gb|AF271512.1|AF271512 Salmo salar microsatellite Hae068 sequence 40 5.8
31dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
32dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
33gb|AC155649.4| Mus musculus 6 BAC RP24-234M19 (Roswell Park Canc... 40 5.8
34gb|AC097370.10| Homo sapiens chromosome 17, clone CTD-2513A7, co... 40 5.8
35gb|AC015921.20| Homo sapiens chromosome 17, clone CTD-3060P21, c... 40 5.8
36gb|AC156445.2| Volvox carteri clone JGIAOBO-25P15, complete sequ... 40 5.8
37dbj|AP003573.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
38dbj|AP004063.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
39dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
40emb|CT009754.11| Mouse DNA sequence from clone RP23-5P19 on chro... 40 5.8
41gb|U57455.1|XLU57455 Xenopus laevis growth factor Livertine mRNA... 40 5.8 
>gb|AC136964.2| Sus scrofa domestica clone RP44-154L9, complete sequence
          Length = 164640

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 14    cctctccatctcctctctgccttcctc 40
             ||||||| |||||||||||||||||||
Sbjct: 36743 cctctccctctcctctctgccttcctc 36717
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>emb|BX470162.9| Zebrafish DNA sequence from clone CH211-216L23 in linkage group 18,
              complete sequence
          Length = 215723

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 23     ctcctctctgccttcctcgatcc 45
              |||||||||||||||||||||||
Sbjct: 157572 ctcctctctgccttcctcgatcc 157550
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>gb|AC122688.5| Homo sapiens 12 BAC RP11-158L12 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 178315

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 15    ctctccatctcctctctgccttcctc 40
             ||||||||||| ||||||||||||||
Sbjct: 34251 ctctccatctcatctctgccttcctc 34226
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>gb|AC133599.3| Mus musculus BAC clone RP24-390N10 from 6, complete sequence
          Length = 185830

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 255   tttgagtataacatttattttc 276
             ||||||||||||||||||||||
Sbjct: 83896 tttgagtataacatttattttc 83875
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 160     ggggatctcggggctgtcaatcggcgagc 188
               |||| ||||||||||||| ||||||||||
Sbjct: 2420896 ggggctctcggggctgtccatcggcgagc 2420868
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>emb|BX927334.17| Zebrafish DNA sequence from clone CH211-112H5 in linkage group 21,
              complete sequence
          Length = 183608

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 275    tcggaataaatcacttttcca 295
              |||||||||||||||||||||
Sbjct: 143045 tcggaataaatcacttttcca 143025
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>emb|BX842578.1| Mycobacterium tuberculosis H37Rv complete genome; segment 7/13
          Length = 346186

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 160    ggggatctcggggctgtcaatcggcgagc 188
              |||| ||||||||||||| ||||||||||
Sbjct: 343501 ggggctctcggggctgtccatcggcgagc 343473
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>emb|BX248341.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 8/14
          Length = 306050

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 160    ggggatctcggggctgtcaatcggcgagc 188
              |||| ||||||||||||| ||||||||||
Sbjct: 197722 ggggctctcggggctgtccatcggcgagc 197694
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 79      accggagcagcgccgccagct 99
               |||||||||||||||||||||
Sbjct: 1174375 accggagcagcgccgccagct 1174395
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>gb|AC134437.3| Mus musculus BAC clone RP24-450H12 from chromosome 19, complete
             sequence
          Length = 171749

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 18    tccatctcctctctgccttcc 38
             |||||||||||||||||||||
Sbjct: 81978 tccatctcctctctgccttcc 81958
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>gb|AC174468.2| Medicago truncatula chromosome 2 BAC clone mth2-89f22, complete
             sequence
          Length = 89512

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 395   tgtagaagtgctggaaaagag 415
             |||||||||||||||||||||
Sbjct: 80655 tgtagaagtgctggaaaagag 80675
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>ref|NM_117265.1| Arabidopsis thaliana unknown protein AT4G11950 mRNA, complete cds
          Length = 984

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  ctcctctccatctcctctct 31
           ||||||||||||||||||||
Sbjct: 872 ctcctctccatctcctctct 853
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>ref|XM_511263.1| PREDICTED: Pan troglodytes similar to hypothetical protein
            (LOC454425), mRNA
          Length = 5721

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 4    ccccactgctcctctccatc 23
            ||||||||||||||||||||
Sbjct: 4012 ccccactgctcctctccatc 3993
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>ref|XM_466666.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 360

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 12  ctcctctccatctcctctctgcct 35
           |||||| |||||||||||||||||
Sbjct: 255 ctcctccccatctcctctctgcct 232
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>gb|BC073334.1| Xenopus laevis growth factor Livertine, mRNA (cDNA clone MGC:80745
           IMAGE:5512321), complete cds
          Length = 3437

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 405 ctggaaaagagtgccagcga 424
           ||||||||||||||||||||
Sbjct: 808 ctggaaaagagtgccagcga 827
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>ref|XM_612397.2| PREDICTED: Bos taurus similar to kelch-like 23 (LOC540631), mRNA
          Length = 1950

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 56  tgcccccgctgctccccgcctcca 79
           |||||| |||||||||||||||||
Sbjct: 110 tgccccggctgctccccgcctcca 87
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>gb|AY550387.1| Salmo salar clone Hae250F microsatellite sequence
          Length = 138

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  ctcctctccatctcctctct 31
           ||||||||||||||||||||
Sbjct: 101 ctcctctccatctcctctct 82
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>gb|AC154581.2| Mus musculus BAC clone RP23-381G5 from chromosome 13, complete sequence
          Length = 200156

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 387    tccacagttgtagaagtgctggaa 410
              ||||||| ||||||||||||||||
Sbjct: 122907 tccacagctgtagaagtgctggaa 122884
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>ref|XM_549013.2| PREDICTED: Canis familiaris similar to TSPY-like 2 (LOC491893),
           mRNA
          Length = 2258

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 73  gcctccaccggagcagcgcc 92
           ||||||||||||||||||||
Sbjct: 245 gcctccaccggagcagcgcc 264
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>gb|AC124499.3| Mus musculus BAC clone RP24-68G23 from chromosome 12, complete sequence
          Length = 209276

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 12     ctcctctccatctcctctct 31
              ||||||||||||||||||||
Sbjct: 141566 ctcctctccatctcctctct 141547
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>gb|AC117252.3| Mus musculus BAC clone RP24-381C17 from chromosome 6, complete sequence
          Length = 129945

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   tctcttctctgtccgcccat 130
             ||||||||||||||||||||
Sbjct: 82634 tctcttctctgtccgcccat 82653
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>gb|DQ446824.1| Arabidopsis thaliana clone pENTR221-At4g11950 hypothetical protein
           (At4g11950) gene, complete cds
          Length = 984

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  ctcctctccatctcctctct 31
           ||||||||||||||||||||
Sbjct: 872 ctcctctccatctcctctct 853
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>emb|AL391666.5| Human DNA sequence from clone RP13-130D24 on chromosome Xq21.31-22.1
              Contains a karyopherin (importin) beta 1 (KPNB1)
              pseudogene, complete sequence
          Length = 147080

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 144    aggctgggagtgttgcgggg 163
              ||||||||||||||||||||
Sbjct: 144593 aggctgggagtgttgcgggg 144574
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>gb|AC162382.8| Mus musculus 6 BAC RP24-398M13 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 200253

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    tctcttctctgtccgcccat 130
              ||||||||||||||||||||
Sbjct: 193583 tctcttctctgtccgcccat 193602
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>emb|AL161533.2|ATCHRIV33 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 33
          Length = 190026

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    ctcctctccatctcctctct 31
             ||||||||||||||||||||
Sbjct: 30536 ctcctctccatctcctctct 30555
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>emb|AL078606.1|ATT26M18 Arabidopsis thaliana DNA chromosome 4, BAC clone T26M18 (ESSA project)
          Length = 90824

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    ctcctctccatctcctctct 31
             ||||||||||||||||||||
Sbjct: 87024 ctcctctccatctcctctct 87043
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>emb|AL049638.1|ATF16J13 Arabidopsis thaliana DNA chromosome 4, BAC clone  F16J13 (ESSA
            project)
          Length = 107600

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 12   ctcctctccatctcctctct 31
            ||||||||||||||||||||
Sbjct: 6706 ctcctctccatctcctctct 6725
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>gb|AC114967.2| Homo sapiens chromosome 5 clone RP11-301A5, complete sequence
          Length = 215308

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 7     cactgctcctctccatctcctctc 30
             |||||||||||||| |||||||||
Sbjct: 76835 cactgctcctctccttctcctctc 76812
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>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 51      gcagctgcccccgctgctcc 70
               ||||||||||||||||||||
Sbjct: 2182149 gcagctgcccccgctgctcc 2182130
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>gb|AF271512.1|AF271512 Salmo salar microsatellite Hae068 sequence
          Length = 417

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  ctcctctccatctcctctct 31
           ||||||||||||||||||||
Sbjct: 134 ctcctctccatctcctctct 115



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  ctcctctccatctcctctct 31
           ||||||||||||||||||||
Sbjct: 101 ctcctctccatctcctctct 82
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 9        ctgctcctctccatctcctc 28
                ||||||||||||||||||||
Sbjct: 25565878 ctgctcctctccatctcctc 25565859
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 12       ctcctctccatctcctctctgcct 35
                |||||| |||||||||||||||||
Sbjct: 23998590 ctcctccccatctcctctctgcct 23998567
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>gb|AC155649.4| Mus musculus 6 BAC RP24-234M19 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 152831

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 111    tctcttctctgtccgcccat 130
              ||||||||||||||||||||
Sbjct: 148365 tctcttctctgtccgcccat 148346
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>gb|AC097370.10| Homo sapiens chromosome 17, clone CTD-2513A7, complete sequence
          Length = 158207

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      ccccactgctcctctccatc 23
              ||||||||||||||||||||
Sbjct: 147213 ccccactgctcctctccatc 147232
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>gb|AC015921.20| Homo sapiens chromosome 17, clone CTD-3060P21, complete sequence
          Length = 140386

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 4    ccccactgctcctctccatc 23
            ||||||||||||||||||||
Sbjct: 3795 ccccactgctcctctccatc 3814
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>gb|AC156445.2| Volvox carteri clone JGIAOBO-25P15, complete sequence
          Length = 31713

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    gagcagcgccgccagctgac 102
             ||||||||||||||||||||
Sbjct: 12039 gagcagcgccgccagctgac 12020
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>dbj|AP003573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0523F01
          Length = 146419

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     ctgctcctctccatctcctc 28
             ||||||||||||||||||||
Sbjct: 84195 ctgctcctctccatctcctc 84176
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>dbj|AP004063.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1476_F05
          Length = 125426

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 12    ctcctctccatctcctctctgcct 35
             |||||| |||||||||||||||||
Sbjct: 33628 ctcctccccatctcctctctgcct 33605
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>dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0496E03
          Length = 138622

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 12     ctcctctccatctcctctctgcct 35
              |||||| |||||||||||||||||
Sbjct: 132554 ctcctccccatctcctctctgcct 132531
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>emb|CT009754.11| Mouse DNA sequence from clone RP23-5P19 on chromosome 13, complete
              sequence
          Length = 255133

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 387    tccacagttgtagaagtgctggaa 410
              ||||||| ||||||||||||||||
Sbjct: 205752 tccacagctgtagaagtgctggaa 205729
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>gb|U57455.1|XLU57455 Xenopus laevis growth factor Livertine mRNA, complete cds
          Length = 2509

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 405 ctggaaaagagtgccagcga 424
           ||||||||||||||||||||
Sbjct: 770 ctggaaaagagtgccagcga 789


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,904,898
Number of Sequences: 3902068
Number of extensions: 3904898
Number of successful extensions: 83287
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82987
Number of HSP's gapped (non-prelim): 300
length of query: 431
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 409
effective length of database: 17,147,199,772
effective search space: 7013204706748
effective search space used: 7013204706748
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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