ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast56d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RNC_RALSO (Q8Y0I1) Ribonuclease III (EC 3.1.26.3) (RNase III) 30 2.9
2C4BP_MOUSE (P08607) C4b-binding protein precursor (C4bp) 30 3.8

>RNC_RALSO (Q8Y0I1) Ribonuclease III (EC 3.1.26.3) (RNase III)|
          Length = 256

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = -3

Query: 361 IRERGQGERPDLAVLEELVGGDHVLARAAEFELRVT*PTVPAAISGTSSSRRGREQ 194
           ++E  QG +  +A+ +  V   H  A   +FE+  T P +   +SG+ +SRR  EQ
Sbjct: 157 LQEYLQGHK--IALPQYAVVATHGAAHNQQFEVECTIPKLEIRVSGSGASRRAAEQ 210



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>C4BP_MOUSE (P08607) C4b-binding protein precursor (C4bp)|
          Length = 469

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +1

Query: 40  TRASHGRRHRQHLLYPFRQRALQPRAFPCHLQXXXXXXLFFQCTGQPHPPPAV 198
           TRA+HGR HR   +  +    L   + P   Q      L+    G+  PPPA+
Sbjct: 12  TRAAHGRLHRNRDVVAWPFSTLCRVSGPTLFQMTFTAALWVAVFGKCGPPPAI 64


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,306,588
Number of Sequences: 219361
Number of extensions: 511381
Number of successful extensions: 1191
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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