ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast56d12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 186 4e-44
2gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare str... 186 4e-44
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 186 4e-44
4dbj|AK071041.1| Oryza sativa (japonica cultivar-group) cDNA clon... 186 4e-44
5gb|AC074105.3| Oryza sativa chromosome 10 clone OSJNBa0030B02, c... 76 1e-10
6dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
7gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 76 1e-10
8dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
9gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 64 4e-07
10emb|AL928745.3|CNS08CBI Oryza sativa chromosome 12, . BAC OSJNBb... 64 4e-07
11gb|AC115697.19| Mus musculus chromosome 7, clone RP24-233E11, co... 44 0.40
12gb|AC134922.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.40
13gb|AC134924.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.40
14ref|XM_967266.1| PREDICTED: Tribolium castaneum similar to CG116... 44 0.40
15dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
16dbj|AK106728.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.40
17dbj|AK105350.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.40
18gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.40
19ref|XM_954518.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.6
20ref|XM_325875.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.6
21dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
22gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.6
23emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4,... 42 1.6
24gb|AC092266.4| Homo sapiens chromosome 5 clone RP11-24P24, compl... 42 1.6
25ref|NM_189842.2| Oryza sativa (japonica cultivar-group), mRNA 40 6.2
26ref|XM_506476.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 6.2
27ref|XM_957954.1| Neurospora crassa OR74A hypothetical protein (N... 40 6.2
28ref|XM_325539.1| Neurospora crassa OR74A hypothetical protein (N... 40 6.2
29emb|CR683398.2|CNS0FQ9E Tetraodon nigroviridis full-length cDNA 40 6.2
30gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 6.2
31emb|AL139385.12| Human DNA sequence from clone RP11-90L1 on chro... 40 6.2
32dbj|AK095260.1| Homo sapiens cDNA FLJ37941 fis, clone CTONG2008269 40 6.2
33gb|AF327876.1|AF327876 Chlamydomonas reinhardtii PF6 protein gen... 40 6.2
34dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
35dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
36dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
37dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 6.2
38gb|AF147973.1|AF147973 Membranipora membranacea isolate IS2 cyto... 40 6.2
39gb|AF147970.1|AF147970 Membranipora membranacea isolate CU6 cyto... 40 6.2
40gb|AF147966.1|AF147966 Membranipora membranacea isolate CU2 cyto... 40 6.2
41gb|AF147961.1|AF147961 Membranipora membranacea isolate CS3 cyto... 40 6.2
42gb|AF147959.1|AF147959 Membranipora membranacea isolate CS1 cyto... 40 6.2
43dbj|AP006751.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
44dbj|AP003458.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
45dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
46dbj|AP004309.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
47dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
48dbj|AP004635.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
49dbj|AK107576.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
50dbj|AK072031.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
51dbj|AK070686.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
52dbj|AP005621.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  186 bits (94), Expect = 4e-44
 Identities = 115/122 (94%)
 Strand = Plus / Plus

                                                                            
Query: 260      gcggagttcgaattcggcggccctggcgagcacatgatctccgccgacgagctcttccag 319
                ||||||||||| ||||||||||| |||| || ||||||||||||||||||||||||||| 
Sbjct: 10664585 gcggagttcgagttcggcggccccggcgggcccatgatctccgccgacgagctcttccac 10664644

                                                                            
Query: 320      aacggccagatccggccgctcaccctgtccccgctcccggatctcgaccccgacagcgac 379
                ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 10664645 aacggccagatccggccgctcaccctgcccccgctcccggatctcgaccccggcagcgac 10664704

                  
Query: 380      ga 381
                ||
Sbjct: 10664705 ga 10664706



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 61/65 (93%)
 Strand = Plus / Plus

                                                                            
Query: 50       gccatggacgacgacatcgacagcacctgctctacccctttcgccagcgcgccctccagc 109
                ||||||||||||||||||||||||| |||||| ||||| |||||||||||||| ||||||
Sbjct: 10664390 gccatggacgacgacatcgacagcagctgctccaccccattcgccagcgcgccgtccagc 10664449

                     
Query: 110      cccgg 114
                |||||
Sbjct: 10664450 cccgg 10664454



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                    
Query: 161      ttcagtgcaccggccagccccatccaccacctgctgttctcgtcctcgtcgg 212
                ||||| || ||||||||||||||||||||||||||  |||| ||||| ||||
Sbjct: 10664486 ttcagcgcgccggccagccccatccaccacctgctcctctcctcctcctcgg 10664537



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                          
Query: 416      ggccgcgagcccacgttccggagcggctccgtgcaccgccgc 457
                ||||||||||  ||| | |||||||| |||||||||||||||
Sbjct: 10664750 ggccgcgagctgacgctgcggagcgggtccgtgcaccgccgc 10664791
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>gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0032G21, from chromosome 3, complete sequence
          Length = 187621

 Score =  186 bits (94), Expect = 4e-44
 Identities = 115/122 (94%)
 Strand = Plus / Plus

                                                                         
Query: 260   gcggagttcgaattcggcggccctggcgagcacatgatctccgccgacgagctcttccag 319
             ||||||||||| ||||||||||| |||| || ||||||||||||||||||||||||||| 
Sbjct: 81499 gcggagttcgagttcggcggccccggcgggcccatgatctccgccgacgagctcttccac 81558

                                                                         
Query: 320   aacggccagatccggccgctcaccctgtccccgctcccggatctcgaccccgacagcgac 379
             ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 81559 aacggccagatccggccgctcaccctgcccccgctcccggatctcgaccccggcagcgac 81618

               
Query: 380   ga 381
             ||
Sbjct: 81619 ga 81620



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 61/65 (93%)
 Strand = Plus / Plus

                                                                         
Query: 50    gccatggacgacgacatcgacagcacctgctctacccctttcgccagcgcgccctccagc 109
             ||||||||||||||||||||||||| |||||| ||||| |||||||||||||| ||||||
Sbjct: 81304 gccatggacgacgacatcgacagcagctgctccaccccattcgccagcgcgccgtccagc 81363

                  
Query: 110   cccgg 114
             |||||
Sbjct: 81364 cccgg 81368



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                 
Query: 161   ttcagtgcaccggccagccccatccaccacctgctgttctcgtcctcgtcgg 212
             ||||| || ||||||||||||||||||||||||||  |||| ||||| ||||
Sbjct: 81400 ttcagcgcgccggccagccccatccaccacctgctcctctcctcctcctcgg 81451



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                       
Query: 416   ggccgcgagcccacgttccggagcggctccgtgcaccgccgc 457
             ||||||||||  ||| | |||||||| |||||||||||||||
Sbjct: 81664 ggccgcgagctgacgctgcggagcgggtccgtgcaccgccgc 81705
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  186 bits (94), Expect = 4e-44
 Identities = 115/122 (94%)
 Strand = Plus / Plus

                                                                            
Query: 260      gcggagttcgaattcggcggccctggcgagcacatgatctccgccgacgagctcttccag 319
                ||||||||||| ||||||||||| |||| || ||||||||||||||||||||||||||| 
Sbjct: 10662686 gcggagttcgagttcggcggccccggcgggcccatgatctccgccgacgagctcttccac 10662745

                                                                            
Query: 320      aacggccagatccggccgctcaccctgtccccgctcccggatctcgaccccgacagcgac 379
                ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 10662746 aacggccagatccggccgctcaccctgcccccgctcccggatctcgaccccggcagcgac 10662805

                  
Query: 380      ga 381
                ||
Sbjct: 10662806 ga 10662807



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 61/65 (93%)
 Strand = Plus / Plus

                                                                            
Query: 50       gccatggacgacgacatcgacagcacctgctctacccctttcgccagcgcgccctccagc 109
                ||||||||||||||||||||||||| |||||| ||||| |||||||||||||| ||||||
Sbjct: 10662491 gccatggacgacgacatcgacagcagctgctccaccccattcgccagcgcgccgtccagc 10662550

                     
Query: 110      cccgg 114
                |||||
Sbjct: 10662551 cccgg 10662555



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                    
Query: 161      ttcagtgcaccggccagccccatccaccacctgctgttctcgtcctcgtcgg 212
                ||||| || ||||||||||||||||||||||||||  |||| ||||| ||||
Sbjct: 10662587 ttcagcgcgccggccagccccatccaccacctgctcctctcctcctcctcgg 10662638



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                          
Query: 416      ggccgcgagcccacgttccggagcggctccgtgcaccgccgc 457
                ||||||||||  ||| | |||||||| |||||||||||||||
Sbjct: 10662851 ggccgcgagctgacgctgcggagcgggtccgtgcaccgccgc 10662892
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>dbj|AK071041.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081F02, full
           insert sequence
          Length = 1575

 Score =  186 bits (94), Expect = 4e-44
 Identities = 115/122 (94%)
 Strand = Plus / Plus

                                                                       
Query: 260 gcggagttcgaattcggcggccctggcgagcacatgatctccgccgacgagctcttccag 319
           ||||||||||| ||||||||||| |||| || ||||||||||||||||||||||||||| 
Sbjct: 269 gcggagttcgagttcggcggccccggcgggcccatgatctccgccgacgagctcttccac 328

                                                                       
Query: 320 aacggccagatccggccgctcaccctgtccccgctcccggatctcgaccccgacagcgac 379
           ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 329 aacggccagatccggccgctcaccctgcccccgctcccggatctcgaccccggcagcgac 388

             
Query: 380 ga 381
           ||
Sbjct: 389 ga 390



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 61/65 (93%)
 Strand = Plus / Plus

                                                                       
Query: 50  gccatggacgacgacatcgacagcacctgctctacccctttcgccagcgcgccctccagc 109
           ||||||||||||||||||||||||| |||||| ||||| |||||||||||||| ||||||
Sbjct: 74  gccatggacgacgacatcgacagcagctgctccaccccattcgccagcgcgccgtccagc 133

                
Query: 110 cccgg 114
           |||||
Sbjct: 134 cccgg 138



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                               
Query: 161 ttcagtgcaccggccagccccatccaccacctgctgttctcgtcctcgtcgg 212
           ||||| || ||||||||||||||||||||||||||  |||| ||||| ||||
Sbjct: 170 ttcagcgcgccggccagccccatccaccacctgctcctctcctcctcctcgg 221



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 416 ggccgcgagcccacgttccggagcggctccgtgcaccgccgc 457
           ||||||||||  ||| | |||||||| |||||||||||||||
Sbjct: 434 ggccgcgagctgacgctgcggagcgggtccgtgcaccgccgc 475
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>gb|AC074105.3| Oryza sativa chromosome 10 clone OSJNBa0030B02, complete sequence
          Length = 146836

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                         
Query: 307   cgagctcttccagaacggccagatccggccgctcaccctgtccccgctcccggatctcga 366
             |||||||| ||| ||||||||||||| |||||  ||| ||||||||| |||| |||||||
Sbjct: 79979 cgagctctaccacaacggccagatccagccgcgaaccttgtccccgcccccgaatctcga 79920

                                   
Query: 367   ccccgacagcgacgaagatgac 388
             ||| |||||||| || ||||||
Sbjct: 79919 ccctgacagcgatgacgatgac 79898
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                           
Query: 307     cgagctcttccagaacggccagatccggccgctcaccctgtccccgctcccggatctcga 366
               |||||||| ||| ||||||||||||| |||||  ||| ||||||||| |||| |||||||
Sbjct: 2753203 cgagctctaccacaacggccagatccagccgcgaaccttgtccccgcccccgaatctcga 2753144

                                     
Query: 367     ccccgacagcgacgaagatgac 388
               ||| |||||||| || ||||||
Sbjct: 2753143 ccctgacagcgatgacgatgac 2753122
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                           
Query: 307     cgagctcttccagaacggccagatccggccgctcaccctgtccccgctcccggatctcga 366
               |||||||| ||| ||||||||||||| |||||  ||| ||||||||| |||| |||||||
Sbjct: 2753154 cgagctctaccacaacggccagatccagccgcgaaccttgtccccgcccccgaatctcga 2753095

                                     
Query: 367     ccccgacagcgacgaagatgac 388
               ||| |||||||| || ||||||
Sbjct: 2753094 ccctgacagcgatgacgatgac 2753073
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                                    
Query: 298      ctccgccgacgagctcttccagaacggccagatccg 333
                ||||||||||||||||||||| ||||||||||||||
Sbjct: 22704931 ctccgccgacgagctcttccacaacggccagatccg 22704966
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                                    
Query: 298      ctccgccgacgagctcttccagaacggccagatccg 333
                ||||||||||||||||||||| ||||||||||||||
Sbjct: 22633122 ctccgccgacgagctcttccacaacggccagatccg 22633157
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>emb|AL928745.3|CNS08CBI Oryza sativa chromosome 12, . BAC OSJNBb0092G12 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 131603

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                                 
Query: 298   ctccgccgacgagctcttccagaacggccagatccg 333
             ||||||||||||||||||||| ||||||||||||||
Sbjct: 16781 ctccgccgacgagctcttccacaacggccagatccg 16816
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>gb|AC115697.19| Mus musculus chromosome 7, clone RP24-233E11, complete sequence
          Length = 161690

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 405   gccccgcgcgcggccgcgagcc 426
             ||||||||||||||||||||||
Sbjct: 80714 gccccgcgcgcggccgcgagcc 80693
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>gb|AC134922.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0004D06, complete sequence
          Length = 157547

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 308   gagctcttccagaacggccagatccg 333
             ||||||||||| ||||||||||||||
Sbjct: 29601 gagctcttccacaacggccagatccg 29626
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>gb|AC134924.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBb0076M06, complete sequence
          Length = 133581

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 308    gagctcttccagaacggccagatccg 333
              ||||||||||| ||||||||||||||
Sbjct: 129418 gagctcttccacaacggccagatccg 129443
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>ref|XM_967266.1| PREDICTED: Tribolium castaneum similar to CG11614-PA (LOC661080),
            mRNA
          Length = 1749

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 93   ccagcgcgccctccagccccgg 114
            ||||||||||||||||||||||
Sbjct: 1637 ccagcgcgccctccagccccgg 1658
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 308      gagctcttccagaacggccagatccg 333
                ||||||||||| ||||||||||||||
Sbjct: 26327769 gagctcttccacaacggccagatccg 26327794
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>dbj|AK106728.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-H07, full
            insert sequence
          Length = 2386

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 308  gagctcttccagaacggccagatccg 333
            ||||||||||| ||||||||||||||
Sbjct: 1832 gagctcttccacaacggccagatccg 1807
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>dbj|AK105350.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-A05, full
           insert sequence
          Length = 1300

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 308 gagctcttccagaacggccagatccg 333
           ||||||||||| ||||||||||||||
Sbjct: 325 gagctcttccacaacggccagatccg 350
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 308      gagctcttccagaacggccagatccg 333
                ||||||||||| ||||||||||||||
Sbjct: 26642027 gagctcttccacaacggccagatccg 26642052
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>ref|XM_954518.1| Neurospora crassa OR74A hypothetical protein (NCU06021.1) partial
           mRNA
          Length = 1266

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 191 ctgctgttctcgtcctcgtcg 211
           |||||||||||||||||||||
Sbjct: 164 ctgctgttctcgtcctcgtcg 144
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>ref|XM_325875.1| Neurospora crassa OR74A hypothetical protein (NCU06021.1) partial
           mRNA
          Length = 1266

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 191 ctgctgttctcgtcctcgtcg 211
           |||||||||||||||||||||
Sbjct: 164 ctgctgttctcgtcctcgtcg 144
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 50       gccatggacgacgacatcgacagca 74
                |||||||||||| ||||||||||||
Sbjct: 18349017 gccatggacgacaacatcgacagca 18349041
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 403    cggccccgcgcgcggccgcgagccc 427
              ||||| |||||||||||||||||||
Sbjct: 172758 cggccgcgcgcgcggccgcgagccc 172734
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>emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006N15,
             complete sequence
          Length = 133413

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 50    gccatggacgacgacatcgacagca 74
             |||||||||||| ||||||||||||
Sbjct: 50940 gccatggacgacaacatcgacagca 50964
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>gb|AC092266.4| Homo sapiens chromosome 5 clone RP11-24P24, complete sequence
          Length = 171601

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 173    gccagccccatccaccacctgctgt 197
              ||||||||||||||||||| |||||
Sbjct: 115024 gccagccccatccaccaccagctgt 115000
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>ref|NM_189842.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1467

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 300 ccgccgacgagctcttccagaacggccagatccggccgct 339
           ||||||||||||||||| ||  ||||  ||||||||||||
Sbjct: 451 ccgccgacgagctcttcgagggcggcaggatccggccgct 490
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>ref|XM_506476.1| PREDICTED Oryza sativa (japonica cultivar-group), P0560B08.115 mRNA
          Length = 1544

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 300 ccgccgacgagctcttccagaacggccagatccggccgct 339
           ||||||||||||||||| ||  ||||  ||||||||||||
Sbjct: 568 ccgccgacgagctcttcgagggcggcaggatccggccgct 607
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>ref|XM_957954.1| Neurospora crassa OR74A hypothetical protein (NCU05685.1) partial
            mRNA
          Length = 1695

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 330  tccggccgctcaccctgtccccgctccc 357
            |||||||||||| |||||||||| ||||
Sbjct: 1227 tccggccgctcagcctgtccccgttccc 1254
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>ref|XM_325539.1| Neurospora crassa OR74A hypothetical protein (NCU05685.1) partial
            mRNA
          Length = 1695

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 330  tccggccgctcaccctgtccccgctccc 357
            |||||||||||| |||||||||| ||||
Sbjct: 1227 tccggccgctcagcctgtccccgttccc 1254
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>emb|CR683398.2|CNS0FQ9E Tetraodon nigroviridis full-length cDNA
          Length = 1254

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 433  ccggagcggctccgtgcacc 452
            ||||||||||||||||||||
Sbjct: 1099 ccggagcggctccgtgcacc 1080
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 388    cagcgaacggcgccacggccccgc 411
              ||||||||||||||| ||||||||
Sbjct: 587141 cagcgaacggcgccatggccccgc 587118
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>emb|AL139385.12| Human DNA sequence from clone RP11-90L1 on chromosome 13 Contains the 3'
              end of the COL4A2 gene for collagen type IV alpha 2, the
              RAB20 gene for a RAS oncogene family member, a novel gene
              (FLJ10769 FLJ25038 FLJ14198), the 5' end of a novel gene
              (FLJ12118) and three CpG islands, complete sequence
          Length = 177392

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 394    acggcgccacggccccgcgcgcgg 417
              |||||||| |||||||||||||||
Sbjct: 129389 acggcgccccggccccgcgcgcgg 129366
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>dbj|AK095260.1| Homo sapiens cDNA FLJ37941 fis, clone CTONG2008269
          Length = 2458

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 394 acggcgccacggccccgcgcgcgg 417
           |||||||| |||||||||||||||
Sbjct: 496 acggcgccccggccccgcgcgcgg 519
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>gb|AF327876.1|AF327876 Chlamydomonas reinhardtii PF6 protein gene, promoter and complete cds
          Length = 11462

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 397  gcgccacggccccgcgcgcggccg 420
            |||||||||| |||||||||||||
Sbjct: 6732 gcgccacggcgccgcgcgcggccg 6709
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 204     cctcgtcggctgctgctggt 223
               ||||||||||||||||||||
Sbjct: 3453243 cctcgtcggctgctgctggt 3453262
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                        
Query: 300      ccgccgacgagctcttccagaacggccagatccggccgct 339
                ||||||||||||||||| ||  ||||  ||||||||||||
Sbjct: 25538214 ccgccgacgagctcttcgagggcggcaggatccggccgct 25538253
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                       
Query: 300     ccgccgacgagctcttccagaacggccagatccggccgct 339
               ||||||||||||||||| |||| ||  | |||||||||||
Sbjct: 5859718 ccgccgacgagctcttcgagaagggtaaaatccggccgct 5859757



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 380   gaagatgacagcgaacggcg 399
             ||||||||||||||||||||
Sbjct: 92769 gaagatgacagcgaacggcg 92750
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 314     ttccagaacggccagatccg 333
               ||||||||||||||||||||
Sbjct: 5664116 ttccagaacggccagatccg 5664097
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>gb|AF147973.1|AF147973 Membranipora membranacea isolate IS2 cytochrome oxidase I (COI)
           gene, partial cds; mitochondrial gene for mitochondrial
           product
          Length = 601

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 339 tcaccctgtccccgctcccg 358
           ||||||||||||||||||||
Sbjct: 309 tcaccctgtccccgctcccg 290
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>gb|AF147970.1|AF147970 Membranipora membranacea isolate CU6 cytochrome oxidase I (COI)
           gene, partial cds; mitochondrial gene for mitochondrial
           product
          Length = 601

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 339 tcaccctgtccccgctcccg 358
           ||||||||||||||||||||
Sbjct: 309 tcaccctgtccccgctcccg 290
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>gb|AF147966.1|AF147966 Membranipora membranacea isolate CU2 cytochrome oxidase I (COI)
           gene, partial cds; mitochondrial gene for mitochondrial
           product
          Length = 601

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 339 tcaccctgtccccgctcccg 358
           ||||||||||||||||||||
Sbjct: 309 tcaccctgtccccgctcccg 290
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>gb|AF147961.1|AF147961 Membranipora membranacea isolate CS3 cytochrome oxidase I (COI)
           gene, partial cds; mitochondrial gene for mitochondrial
           product
          Length = 601

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 339 tcaccctgtccccgctcccg 358
           ||||||||||||||||||||
Sbjct: 309 tcaccctgtccccgctcccg 290
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>gb|AF147959.1|AF147959 Membranipora membranacea isolate CS1 cytochrome oxidase I (COI)
           gene, partial cds; mitochondrial gene for mitochondrial
           product
          Length = 601

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 339 tcaccctgtccccgctcccg 358
           ||||||||||||||||||||
Sbjct: 309 tcaccctgtccccgctcccg 290
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>dbj|AP006751.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1460A05
          Length = 143371

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 380   gaagatgacagcgaacggcg 399
             ||||||||||||||||||||
Sbjct: 92769 gaagatgacagcgaacggcg 92750
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>dbj|AP003458.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0701E03
          Length = 183245

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                      
Query: 300    ccgccgacgagctcttccagaacggccagatccggccgct 339
              ||||||||||||||||| |||| ||  | |||||||||||
Sbjct: 175247 ccgccgacgagctcttcgagaagggtaaaatccggccgct 175286
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>dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0537F07
          Length = 147724

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 300   ccgccgacgagctcttccagaacggccagatccggccgct 339
             ||||||||||||||||| |||| ||  | |||||||||||
Sbjct: 60493 ccgccgacgagctcttcgagaagggtaaaatccggccgct 60532
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>dbj|AP004309.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0560B08
          Length = 128098

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 300   ccgccgacgagctcttccagaacggccagatccggccgct 339
             ||||||||||||||||| ||  ||||  ||||||||||||
Sbjct: 75484 ccgccgacgagctcttcgagggcggcaggatccggccgct 75523
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>dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0498E12
          Length = 153523

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 204   cctcgtcggctgctgctggt 223
             ||||||||||||||||||||
Sbjct: 86662 cctcgtcggctgctgctggt 86681
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>dbj|AP004635.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0672D01
          Length = 146954

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 204  cctcgtcggctgctgctggt 223
            ||||||||||||||||||||
Sbjct: 8960 cctcgtcggctgctgctggt 8979
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>dbj|AK107576.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-D09, full
           insert sequence
          Length = 1467

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 300 ccgccgacgagctcttccagaacggccagatccggccgct 339
           ||||||||||||||||| ||  ||||  ||||||||||||
Sbjct: 451 ccgccgacgagctcttcgagggcggcaggatccggccgct 490
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>dbj|AK072031.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104E22, full
           insert sequence
          Length = 1545

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 300 ccgccgacgagctcttccagaacggccagatccggccgct 339
           ||||||||||||||||| ||  ||||  ||||||||||||
Sbjct: 568 ccgccgacgagctcttcgagggcggcaggatccggccgct 607
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>dbj|AK070686.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062N20, full
           insert sequence
          Length = 1595

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 300 ccgccgacgagctcttccagaacggccagatccggccgct 339
           ||||||||||||||||| |||| ||  | |||||||||||
Sbjct: 675 ccgccgacgagctcttcgagaagggtaaaatccggccgct 636
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>dbj|AP005621.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0681G01, complete sequence
          Length = 184118

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 380    gaagatgacagcgaacggcg 399
              ||||||||||||||||||||
Sbjct: 127773 gaagatgacagcgaacggcg 127792


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,704,101
Number of Sequences: 3902068
Number of extensions: 2704101
Number of successful extensions: 65501
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64502
Number of HSP's gapped (non-prelim): 999
length of query: 459
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 437
effective length of database: 17,147,199,772
effective search space: 7493326300364
effective search space used: 7493326300364
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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