ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast56d11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_185047.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1645 Score = 113 bits (57), Expect = 5e-22 Identities = 96/109 (88%) Strand = Plus / Plus Query: 274 cggtgggatctcaccagcaaaggggcggagaccattccaatggtgaaagaggctgcggaa 333 ||||||||||| || | ||| || || |||| ||||||||||||||||||||||| |||| Sbjct: 264 cggtgggatctgacgaacaagggtgccgagagcattccaatggtgaaagaggctgtggaa 323 Query: 334 atctccacggacgaagaatcagatggtgttgttatatgcccaccagatg 382 || ||||| |||||||||||||| ||||| |||||||| |||||||||| Sbjct: 324 atgtccacagacgaagaatcagacggtgtcgttatatgtccaccagatg 372
>dbj|AK102772.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107G17, full insert sequence Length = 1664 Score = 113 bits (57), Expect = 5e-22 Identities = 96/109 (88%) Strand = Plus / Plus Query: 274 cggtgggatctcaccagcaaaggggcggagaccattccaatggtgaaagaggctgcggaa 333 ||||||||||| || | ||| || || |||| ||||||||||||||||||||||| |||| Sbjct: 306 cggtgggatctgacgaacaagggtgccgagagcattccaatggtgaaagaggctgtggaa 365 Query: 334 atctccacggacgaagaatcagatggtgttgttatatgcccaccagatg 382 || ||||| |||||||||||||| ||||| |||||||| |||||||||| Sbjct: 366 atgtccacagacgaagaatcagacggtgtcgttatatgtccaccagatg 414
>dbj|AK058959.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-B08, full insert sequence Length = 1601 Score = 113 bits (57), Expect = 5e-22 Identities = 96/109 (88%) Strand = Plus / Plus Query: 274 cggtgggatctcaccagcaaaggggcggagaccattccaatggtgaaagaggctgcggaa 333 ||||||||||| || | ||| || || |||| ||||||||||||||||||||||| |||| Sbjct: 302 cggtgggatctgacgaacaagggtgccgagagcattccaatggtgaaagaggctgtggaa 361 Query: 334 atctccacggacgaagaatcagatggtgttgttatatgcccaccagatg 382 || ||||| |||||||||||||| ||||| |||||||| |||||||||| Sbjct: 362 atgtccacagacgaagaatcagacggtgtcgttatatgtccaccagatg 410
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 99.6 bits (50), Expect = 7e-18 Identities = 68/74 (91%) Strand = Plus / Plus Query: 309 tccaatggtgaaagaggctgcggaaatctccacggacgaagaatcagatggtgttgttat 368 |||||||||||||||||||| |||||| ||||| |||||||||||||| ||||| ||||| Sbjct: 33007990 tccaatggtgaaagaggctgtggaaatgtccacagacgaagaatcagacggtgtcgttat 33008049 Query: 369 atgcccaccagatg 382 ||| |||||||||| Sbjct: 33008050 atgtccaccagatg 33008063
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 99.6 bits (50), Expect = 7e-18 Identities = 68/74 (91%) Strand = Plus / Plus Query: 309 tccaatggtgaaagaggctgcggaaatctccacggacgaagaatcagatggtgttgttat 368 |||||||||||||||||||| |||||| ||||| |||||||||||||| ||||| ||||| Sbjct: 33098500 tccaatggtgaaagaggctgtggaaatgtccacagacgaagaatcagacggtgtcgttat 33098559 Query: 369 atgcccaccagatg 382 ||| |||||||||| Sbjct: 33098560 atgtccaccagatg 33098573
>gb|AC104321.7| Oryza sativa chromosome 3 BAC OSJNBa0052F07 genomic sequence, complete sequence Length = 139823 Score = 99.6 bits (50), Expect = 7e-18 Identities = 68/74 (91%) Strand = Plus / Minus Query: 309 tccaatggtgaaagaggctgcggaaatctccacggacgaagaatcagatggtgttgttat 368 |||||||||||||||||||| |||||| ||||| |||||||||||||| ||||| ||||| Sbjct: 115318 tccaatggtgaaagaggctgtggaaatgtccacagacgaagaatcagacggtgtcgttat 115259 Query: 369 atgcccaccagatg 382 ||| |||||||||| Sbjct: 115258 atgtccaccagatg 115245
>gb|AC164622.3| Mus musculus BAC clone CH36-287E13 from chromosome 13, complete sequence Length = 174691 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 347 aagaatcagatggtgttgttat 368 |||||||||||||||||||||| Sbjct: 2929 aagaatcagatggtgttgttat 2908
>gb|AC090181.9| Homo sapiens chromosome 15, clone RP11-797A18, complete sequence Length = 157793 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 116 cggcggcggggccaggcgaggccgcg 141 ||||||||||||| |||||||||||| Sbjct: 127276 cggcggcggggccgggcgaggccgcg 127251
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 cggcggcggggccaggcgag 135 |||||||||||||||||||| Sbjct: 3615935 cggcggcggggccaggcgag 3615954
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 106 agccgctccacggcggcggggcca 129 ||||||||||||||||||| |||| Sbjct: 616963 agccgctccacggcggcggcgcca 616940 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,854,891 Number of Sequences: 3902068 Number of extensions: 1854891 Number of successful extensions: 31272 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31133 Number of HSP's gapped (non-prelim): 139 length of query: 436 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 414 effective length of database: 17,147,199,772 effective search space: 7098940705608 effective search space used: 7098940705608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
