ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast56d04 |
|---|---|
| Clone Library Name | barley_pub |
>SOX_ARATH (Q9SJA7) Probable sarcosine oxidase (EC 1.5.3.1)| Length = 416 Score = 94.0 bits (232), Expect = 2e-19 Identities = 53/153 (34%), Positives = 77/153 (50%), Gaps = 5/153 (3%) Frame = +1 Query: 19 RLWHDAERDAGYTVLTPTPHLDLGPRDGPAFVAAIAN---GGASELAPAGDASRPAWADA 189 RLW A+ + GY V PT D+GP D + ++ +A G + A ++ Sbjct: 74 RLWAAAQSEIGYKVHFPTQQFDMGPADQQSLLSVVATCQKHGLAHRVMDSHAVSEHFSGR 133 Query: 190 FRVPEGWAAATSGPAGVIKATKAMAMFQTLAAKMGXXXXXXXXXXXXXX--QEGNTIVVK 363 +PE W ++ G+IK TKA++MFQTLA G + G ++V Sbjct: 134 ISIPENWIGVSTELGGIIKPTKAVSMFQTLAIGHGAILRDNTKVANIKRDGESGEGVIVC 193 Query: 364 TSSGEEFHGGKCIITVGARASKLVKSVTGADLP 462 T G++F+G KCI+T GA SKLVK+V G D P Sbjct: 194 TVKGDKFYGKKCIVTAGAWISKLVKTVAGIDFP 226
>MSOX_BACSN (P23342) Monomeric sarcosine oxidase (EC 1.5.3.1) (MSOX)| Length = 387 Score = 45.4 bits (106), Expect = 8e-05 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 5/149 (3%) Frame = +1 Query: 13 AHRLWHDAERDAGYTVLTPTPHLDLGPRDGPAFV-----AAIANGGASELAPAGDASRPA 177 A LW++ E++ + + T T L GP+ G AFV AA + EL G Sbjct: 69 AQELWYELEKETHHKIFTQTGVLVYGPKGGSAFVSETMEAANIHSLEHELF-EGKQLTDR 127 Query: 178 WADAFRVPEGWAAATSGPAGVIKATKAMAMFQTLAAKMGXXXXXXXXXXXXXXQEGNTIV 357 WA VP+ + A +GV+ + + ++ LA G E + + Sbjct: 128 WA-GVEVPDNYEAIFEPNSGVLFSENCIQAYRELAEAHGATVLTYTPVEDFEVTE-DLVT 185 Query: 358 VKTSSGEEFHGGKCIITVGARASKLVKSV 444 +KT+ G + K ++++GA SKL+ + Sbjct: 186 IKTAKG-SYTANKLVVSMGAWNSKLLSKL 213
>MSOX_BACB0 (P40859) Monomeric sarcosine oxidase (EC 1.5.3.1) (MSOX)| Length = 390 Score = 43.1 bits (100), Expect = 4e-04 Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 4/154 (2%) Frame = +1 Query: 13 AHRLWHDAERDAGYTVLTPTPHLDLGPRDGPAFVAAIANGGASELAPA----GDASRPAW 180 + LW++ E++ + + T T L GP+ AFVA GD W Sbjct: 69 SQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRW 128 Query: 181 ADAFRVPEGWAAATSGPAGVIKATKAMAMFQTLAAKMGXXXXXXXXXXXXXXQEGNTIVV 360 VPE + A +GV+ + + ++ LA G +++ + Sbjct: 129 -PGITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISP-DSVKI 186 Query: 361 KTSSGEEFHGGKCIITVGARASKLVKSVTGADLP 462 +T++G + K I+++GA SKL+ S D+P Sbjct: 187 ETANG-SYTADKLIVSMGAWNSKLL-SKLNLDIP 218
>MSOX_ARTST (P40873) Monomeric sarcosine oxidase (EC 1.5.3.1) (MSOX)| Length = 388 Score = 39.3 bits (90), Expect = 0.006 Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 4/148 (2%) Frame = +1 Query: 13 AHRLWHDAERDAGYTVLTPTPHLDLGPRDGPAFVAAIANGGASELAPA----GDASRPAW 180 A LW++ E++ + + T T L GP+ FVA G W Sbjct: 70 AQELWYELEKETHHKIFTKTGVLVFGPKGEAPFVAETMEAAKEHSLDVDLLEGSEINKRW 129 Query: 181 ADAFRVPEGWAAATSGPAGVIKATKAMAMFQTLAAKMGXXXXXXXXXXXXXXQEGNTIVV 360 VPE + A +GV+ + + ++ LA G E + + + Sbjct: 130 -PGVTVPENYNAIFEKNSGVLFSENCIRAYRELAEANGAKVLTYTPVEDFEIAE-DFVKI 187 Query: 361 KTSSGEEFHGGKCIITVGARASKLVKSV 444 +T+ G F K I+++GA SKL+ + Sbjct: 188 QTAYG-SFTASKLIVSMGAWNSKLLSKL 214
>PROB_CAUCR (Q9ABB6) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)| (GK) Length = 377 Score = 33.5 bits (75), Expect = 0.30 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%) Frame = +1 Query: 79 LDLGPRDGPAFVAAIANGGASELAPAGD---ASRPAWADAFRVPEGWAAATSGPAGVIKA 249 + LG R P +AAIA G + L AG A+ AW P+GW +G A + A Sbjct: 244 ITLGSRPRP--LAAIAAGEKATLIEAGASPAAAYKAWIAGSLAPQGWVTVDAGAASALLA 301 Query: 250 TKAM 261 K++ Sbjct: 302 GKSL 305
>CUT2_CAEEL (P34682) Cuticlin-2 precursor| Length = 231 Score = 32.0 bits (71), Expect = 0.88 Identities = 19/48 (39%), Positives = 24/48 (50%) Frame = +1 Query: 94 RDGPAFVAAIANGGASELAPAGDASRPAWADAFRVPEGWAAATSGPAG 237 + GPAF A GGA + PA + PA A++ G AA S P G Sbjct: 145 QSGPAFGGAAPAGGAYQSGPAFGGAAPAVGGAYQA--GQAAVESAPLG 190
>SOX_RABIT (P79371) Peroxisomal sarcosine oxidase (EC 1.5.3.1) (PSO)| (L-pipecolate oxidase) (EC 1.5.3.7) (L-pipecolic acid oxidase) Length = 390 Score = 30.8 bits (68), Expect = 2.0 Identities = 36/159 (22%), Positives = 60/159 (37%), Gaps = 5/159 (3%) Frame = +1 Query: 1 YCRLAH---RLWHDAERDAGYTVLTPTPHLDLGPRDGPAFVAAIANGGASELAPAGDASR 171 Y R+ H ++W E +AG + T L LG ++ AN + +S Sbjct: 64 YTRMMHECYQIWAQLEHEAGTQLHRQTGLLLLGMKENQELKTIQANLSRQRVEHQCLSSE 123 Query: 172 PAWA--DAFRVPEGWAAATSGPAGVIKATKAMAMFQTLAAKMGXXXXXXXXXXXXXXQEG 345 R+P G GVI A KA+ Q ++G G Sbjct: 124 ELKQRFPNIRLPRGEVGLLDNSGGVIYAYKALRALQDAIRQLG--GIVRDGEKVVEINPG 181 Query: 346 NTIVVKTSSGEEFHGGKCIITVGARASKLVKSVTGADLP 462 + VKT+S + +IT G ++L++ + G ++P Sbjct: 182 LLVTVKTTS-RSYQAKSLVITAGPWTNQLLRPL-GIEMP 218
>SOX_HUMAN (Q9P0Z9) Peroxisomal sarcosine oxidase (EC 1.5.3.1) (PSO)| (L-pipecolate oxidase) (EC 1.5.3.7) (L-pipecolic acid oxidase) Length = 390 Score = 30.8 bits (68), Expect = 2.0 Identities = 36/159 (22%), Positives = 60/159 (37%), Gaps = 5/159 (3%) Frame = +1 Query: 1 YCRLAH---RLWHDAERDAGYTVLTPTPHLDLGPRDGPAFVAAIANGGASELAPAGDASR 171 Y R+ H ++W E +AG + T L LG ++ AN + +S Sbjct: 64 YTRMMHECYQIWAQLEHEAGTQLHRQTGLLLLGMKENQELKTIQANLSRQRVEHQCLSSE 123 Query: 172 PAWA--DAFRVPEGWAAATSGPAGVIKATKAMAMFQTLAAKMGXXXXXXXXXXXXXXQEG 345 R+P G GVI A KA+ Q ++G G Sbjct: 124 ELKQRFPNIRLPRGEVGLLDNSGGVIYAYKALRALQDAIRQLG--GIVRDGEKVVEINPG 181 Query: 346 NTIVVKTSSGEEFHGGKCIITVGARASKLVKSVTGADLP 462 + VKT+S + +IT G ++L++ + G ++P Sbjct: 182 LLVTVKTTS-RSYQAKSLVITAGPWTNQLLRPL-GIEMP 218
>PPIB_NEUCR (Q7S7Z6) Peptidyl-prolyl cis-trans isomerase B precursor (EC| 5.2.1.8) (PPIase B) (Rotamase B) Length = 207 Score = 30.4 bits (67), Expect = 2.6 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = +1 Query: 49 GYTVLTPTPHLDLGPRDGPAFVAAIANGGASELAPAG 159 GY V+ + GPRD PA IA G E+ P G Sbjct: 166 GYDVVEKIENTKTGPRDAPAEPIKIAKSGELEVPPEG 202
>NSP1_YEAST (P14907) Nucleoporin NSP1 (Nuclear pore protein NSP1)| (Nucleoskeletal-like protein) (p110) Length = 823 Score = 29.3 bits (64), Expect = 5.7 Identities = 16/39 (41%), Positives = 23/39 (58%) Frame = +1 Query: 118 AIANGGASELAPAGDASRPAWADAFRVPEGWAAATSGPA 234 A + G S+ GDAS+PA++ + E A+ATS PA Sbjct: 359 AFSFGAKSDEKKDGDASKPAFSFGAKPDENKASATSKPA 397
>ARLY_CHLRE (P22675) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)| (ASAL) Length = 473 Score = 29.3 bits (64), Expect = 5.7 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +3 Query: 360 EDIKRGGVPRRQVHHHGGRAGEQAGEVG 443 E + R GVP R+ HHH G A + A + G Sbjct: 383 EYLVRKGVPFRETHHHSGAAVKMAEDRG 410
>FOXE1_MOUSE (Q8R2I0) Forkhead box protein E1 (Thyroid transcription factor 2)| (TTF-2) Length = 371 Score = 29.3 bits (64), Expect = 5.7 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 7/80 (8%) Frame = +1 Query: 73 PHLDLGPRDGPAFVAAIANGGASELAPAGDAS-----RPAWADAFRV--PEGWAAATSGP 231 P L P GPA AA GG+ A A A+ +PA R P +AAA +GP Sbjct: 224 PERPLSPDLGPAPSAA---GGSCAFAAAAGAAGTGSFQPAVCTGARPVNPAAYAAAYAGP 280 Query: 232 AGVIKATKAMAMFQTLAAKM 291 G + A+F A ++ Sbjct: 281 DGAYPQGASSALFAAAAGRL 300
>FETUA_PIG (P29700) Alpha-2-HS-glycoprotein precursor (Fetuin-A) (Fragment)| Length = 362 Score = 28.9 bits (63), Expect = 7.5 Identities = 23/76 (30%), Positives = 31/76 (40%) Frame = +1 Query: 169 RPAWADAFRVPEGWAAATSGPAGVIKATKAMAMFQTLAAKMGXXXXXXXXXXXXXXQEGN 348 +PA ADA P AAAT+ P + A + +A G G Sbjct: 257 QPAGADAGATPVVDAAATASPLADVPAASLVVGPMVVAVPPGIPPVHRSHYDLRHSFSG- 315 Query: 349 TIVVKTSSGEEFHGGK 396 V+++SGE FH GK Sbjct: 316 VASVESASGEAFHVGK 331
>GLMM_BIFLO (Q8G533) Phosphoglucosamine mutase (EC 5.4.2.10)| Length = 461 Score = 28.5 bits (62), Expect = 9.7 Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 3/91 (3%) Frame = +1 Query: 91 PRDGPAFVAAIANGGASELAPAGDASRPAWADAFRV---PEGWAAATSGPAGVIKATKAM 261 P G VA ANG S +AP +A R A AD + P+G+ + AG + Sbjct: 184 PLKGLKIVADCANGATSVVAP--EALRRAGADVIVINASPDGYNINKN--AGSTHPEQLQ 239 Query: 262 AMFQTLAAKMGXXXXXXXXXXXXXXQEGNTI 354 AM + A MG ++GN I Sbjct: 240 AMVKATDAVMGVAFDGDADRCLAVDEDGNMI 270
>THIED_COREF (Q8FTH8) Multifunctional protein thiED [Includes:| Thiamine-phosphate pyrophosphorylase (EC 2.5.1.3) (TMP pyrophosphorylase) (TMP-PPase) (Thiamine-phosphate synthase); Phosphomethylpyrimidine kinase (EC 2.7.4.7) (HMP-phosphate kinase) (HMP-P k Length = 739 Score = 28.5 bits (62), Expect = 9.7 Identities = 14/39 (35%), Positives = 17/39 (43%) Frame = +1 Query: 64 TPTPHLDLGPRDGPAFVAAIANGGASELAPAGDASRPAW 180 TP PHL +G + A LAPAG +R W Sbjct: 494 TPWPHLRMGAPSDGIITPSDTQSPAPALAPAGPYTRALW 532 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.132 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,168,825 Number of Sequences: 219361 Number of extensions: 877555 Number of successful extensions: 3221 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3084 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3215 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
