| Clone Name | bast56d04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009333.1| Triticum aestivum clone wlm4.pk0002.c12:fis, full insert mRNA sequence Length = 1604 Score = 400 bits (202), Expect = e-108 Identities = 408/472 (86%), Gaps = 11/472 (2%) Strand = Plus / Plus Query: 18 ccgcctctggcacgacgccgagcgcgacgccggctacaccgtgctcacgcccaccccgca 77 |||||||||| ||||||| |||||||| |||| ||| |||||||||||||||||||||| Sbjct: 296 ccgcctctgggacgacgcgcagcgcgactccgggtacgccgtgctcacgcccaccccgca 355 Query: 78 cctcgacctggggccccgagacgggccggccttcgtcgccgccatcgccaacggcggcgc 137 |||||||||||| || || |||| ||||| ||||||||| || |||||||||||||||| Sbjct: 356 cctcgacctgggcccgcgggacgacccggcgttcgtcgcctccgtcgccaacggcggcgc 415 Query: 138 cagcgagctcgccccggcaggggacgcatcgcggccagcgtgggcggatgccttcagggt 197 || | |||||| |||| | |||||| | || ||| ||||||||||||| |||||||| Sbjct: 416 caccttcctcgcctcggcggcggacgcgccacgcccatcgtgggcggatgcgttcagggt 475 Query: 198 gccggaggggtgggccgcggcgaccagcgggccggccggtgtgataaaggcgaccaaggc 257 ||| || |||||||| ||||||| ||||| || || ||| ||||| |||||||||||||| Sbjct: 476 gcccgacgggtgggcggcggcgagcagcgagctgggcggggtgatgaaggcgaccaaggc 535 Query: 258 gatggccatgttccaaacgctcgccgccaagatgggcgccgtcgtgagggacagggcgga 317 | ||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||| Sbjct: 536 ggtggccatgttccaggcgctggccgccaagatgggcgccgtcgtgagggacaggacgga 595 Query: 318 ggtggtagacgtcgccaggca---agaaggaa--ac----acgatcgtggtgaagacatc 368 ||| || |||||||||||| | |||||||| || |||||||||||||||||| | Sbjct: 596 ggtcgtcgacgtcgccaggaaaggagaaggaacgacggcgacgatcgtggtgaagacagc 655 Query: 369 aagcggggaggagttccacggcggcaagtgcatcatcacggtgggcgcgcgggcgagcaa 428 | ||| |||||||||||||||||||||||||||||||| || |||||| || ||||||| Sbjct: 656 taccggcgaggagttccacggcggcaagtgcatcatcaccgtcggcgcgtggacgagcaa 715 Query: 429 gctggtgaagtcggtcaccggcgccgacctg-ccgtgcagccg-tgcacacc 478 |||||| |||||||||||||||||||||||| ||||||||||| |||||||| Sbjct: 716 gctggtcaagtcggtcaccggcgccgacctgcccgtgcagccgctgcacacc 767
>gb|AC099404.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0019D02, complete sequence Length = 154692 Score = 147 bits (74), Expect = 4e-32 Identities = 111/122 (90%), Gaps = 1/122 (0%) Strand = Plus / Minus Query: 350 cgatcgtggtgaagacatcaagcggggaggagttccacggcggcaagtgcatcatcacgg 409 ||||||||||||||||||| ||||| ||||||||||| |||| ||||||||||||||||| Sbjct: 27204 cgatcgtggtgaagacatcgagcggcgaggagttccatggcgccaagtgcatcatcacgg 27145 Query: 410 tgggcgcgcgggcgagcaagctggtgaagtcggtcaccggcgccgacctgcc-gtgcagc 468 ||||||| |||| ||||||||||||| ||||||| |||||| ||||||||| ||||||| Sbjct: 27144 tgggcgcctgggccagcaagctggtgaggtcggtcgccggcgtcgacctgccggtgcagc 27085 Query: 469 cg 470 || Sbjct: 27084 cg 27083 Score = 109 bits (55), Expect = 8e-21 Identities = 112/131 (85%) Strand = Plus / Minus Query: 190 ttcagggtgccggaggggtgggccgcggcgaccagcgggccggccggtgtgataaaggcg 249 |||||| |||| ||||||||| | |||||||| |||| | | ||| ||||| |||||| Sbjct: 29282 ttcaggctgcccgaggggtggacggcggcgacgagcgagatcggcggcgtgatgaaggcg 29223 Query: 250 accaaggcgatggccatgttccaaacgctcgccgccaagatgggcgccgtcgtgagggac 309 ||||||||| ||||||||||||| ||||||||||||||| |||||||||||| ||||| Sbjct: 29222 accaaggcggtggccatgttccagtcgctcgccgccaagaacggcgccgtcgtgcgggac 29163 Query: 310 agggcggaggt 320 ||| ||||||| Sbjct: 29162 aggacggaggt 29152 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 19 cgcctctggcacgacgccgagcgcgacgccggctacaccgtgctcacgcccaccccgcac 78 ||||||||| |||||||| ||||||||||||||||| ||||||||| || || |||||| Sbjct: 29450 cgcctctgggacgacgcccagcgcgacgccggctaccgcgtgctcaccccgacgccgcac 29391 Query: 79 ctcgacctggggccccg 95 |||||| |||| ||||| Sbjct: 29390 ctcgacatgggcccccg 29374
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 147 bits (74), Expect = 4e-32 Identities = 111/122 (90%), Gaps = 1/122 (0%) Strand = Plus / Plus Query: 350 cgatcgtggtgaagacatcaagcggggaggagttccacggcggcaagtgcatcatcacgg 409 ||||| |||||||||| || |||||||||||||||||||||| ||||||||||||||| | Sbjct: 21904483 cgatcttggtgaagacgtcgagcggggaggagttccacggcgccaagtgcatcatcacag 21904542 Query: 410 tgggcgcgcgggcgagcaagctggtgaagtcggtcaccggcgccgacctgcc-gtgcagc 468 |||||||| ||||||||||||| || ||||||||| |||||| ||||||||| ||||||| Sbjct: 21904543 tgggcgcgtgggcgagcaagcttgtcaagtcggtcgccggcgtcgacctgccagtgcagc 21904602 Query: 469 cg 470 || Sbjct: 21904603 cg 21904604 Score = 79.8 bits (40), Expect = 8e-12 Identities = 118/144 (81%) Strand = Plus / Plus Query: 197 tgccggaggggtgggccgcggcgaccagcgggccggccggtgtgataaaggcgaccaagg 256 |||| ||||||||| | ||||||| ||||| || | ||| || || ||||| ||||||| Sbjct: 21903950 tgcccgaggggtggacggcggcgagcagcgagctcggcggcgtcatcaaggccaccaagg 21904009 Query: 257 cgatggccatgttccaaacgctcgccgccaagatgggcgccgtcgtgagggacagggcgg 316 || | ||||||||||| ||||||||||||||| |||||||| | ||||||||| ||| Sbjct: 21904010 cggttgccatgttccagtcgctcgccgccaagaacggcgccgtgctcagggacaggacgg 21904069 Query: 317 aggtggtagacgtcgccaggcaag 340 ||||| | ||| |||||| ||||| Sbjct: 21904070 aggtgatcgacatcgccaagcaag 21904093
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 147 bits (74), Expect = 4e-32 Identities = 111/122 (90%), Gaps = 1/122 (0%) Strand = Plus / Minus Query: 350 cgatcgtggtgaagacatcaagcggggaggagttccacggcggcaagtgcatcatcacgg 409 ||||||||||||||||||| ||||| ||||||||||| |||| ||||||||||||||||| Sbjct: 18981940 cgatcgtggtgaagacatcgagcggcgaggagttccatggcgccaagtgcatcatcacgg 18981881 Query: 410 tgggcgcgcgggcgagcaagctggtgaagtcggtcaccggcgccgacctgcc-gtgcagc 468 ||||||| |||| ||||||||||||| ||||||| |||||| ||||||||| ||||||| Sbjct: 18981880 tgggcgcctgggccagcaagctggtgaggtcggtcgccggcgtcgacctgccggtgcagc 18981821 Query: 469 cg 470 || Sbjct: 18981820 cg 18981819 Score = 109 bits (55), Expect = 8e-21 Identities = 112/131 (85%) Strand = Plus / Minus Query: 190 ttcagggtgccggaggggtgggccgcggcgaccagcgggccggccggtgtgataaaggcg 249 |||||| |||| ||||||||| | |||||||| |||| | | ||| ||||| |||||| Sbjct: 18984019 ttcaggctgcccgaggggtggacggcggcgacgagcgagatcggcggcgtgatgaaggcg 18983960 Query: 250 accaaggcgatggccatgttccaaacgctcgccgccaagatgggcgccgtcgtgagggac 309 ||||||||| ||||||||||||| ||||||||||||||| |||||||||||| ||||| Sbjct: 18983959 accaaggcggtggccatgttccagtcgctcgccgccaagaacggcgccgtcgtgcgggac 18983900 Query: 310 agggcggaggt 320 ||| ||||||| Sbjct: 18983899 aggacggaggt 18983889 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 19 cgcctctggcacgacgccgagcgcgacgccggctacaccgtgctcacgcccaccccgcac 78 ||||||||| |||||||| ||||||||||||||||| ||||||||| || || |||||| Sbjct: 18984187 cgcctctgggacgacgcccagcgcgacgccggctaccgcgtgctcaccccgacgccgcac 18984128 Query: 79 ctcgacctggggccccg 95 |||||| |||| ||||| Sbjct: 18984127 ctcgacatgggcccccg 18984111
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 147 bits (74), Expect = 4e-32 Identities = 111/122 (90%), Gaps = 1/122 (0%) Strand = Plus / Plus Query: 350 cgatcgtggtgaagacatcaagcggggaggagttccacggcggcaagtgcatcatcacgg 409 ||||| |||||||||| || |||||||||||||||||||||| ||||||||||||||| | Sbjct: 21832828 cgatcttggtgaagacgtcgagcggggaggagttccacggcgccaagtgcatcatcacag 21832887 Query: 410 tgggcgcgcgggcgagcaagctggtgaagtcggtcaccggcgccgacctgcc-gtgcagc 468 |||||||| ||||||||||||| || ||||||||| |||||| ||||||||| ||||||| Sbjct: 21832888 tgggcgcgtgggcgagcaagcttgtcaagtcggtcgccggcgtcgacctgccagtgcagc 21832947 Query: 469 cg 470 || Sbjct: 21832948 cg 21832949 Score = 79.8 bits (40), Expect = 8e-12 Identities = 118/144 (81%) Strand = Plus / Plus Query: 197 tgccggaggggtgggccgcggcgaccagcgggccggccggtgtgataaaggcgaccaagg 256 |||| ||||||||| | ||||||| ||||| || | ||| || || ||||| ||||||| Sbjct: 21832295 tgcccgaggggtggacggcggcgagcagcgagctcggcggcgtcatcaaggccaccaagg 21832354 Query: 257 cgatggccatgttccaaacgctcgccgccaagatgggcgccgtcgtgagggacagggcgg 316 || | ||||||||||| ||||||||||||||| |||||||| | ||||||||| ||| Sbjct: 21832355 cggttgccatgttccagtcgctcgccgccaagaacggcgccgtgctcagggacaggacgg 21832414 Query: 317 aggtggtagacgtcgccaggcaag 340 ||||| | ||| |||||| ||||| Sbjct: 21832415 aggtgatcgacatcgccaagcaag 21832438
>emb|AL831807.7|CNS08CAK Oryza sativa chromosome 12, . BAC OSJNBa0062E22 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 138308 Score = 147 bits (74), Expect = 4e-32 Identities = 111/122 (90%), Gaps = 1/122 (0%) Strand = Plus / Plus Query: 350 cgatcgtggtgaagacatcaagcggggaggagttccacggcggcaagtgcatcatcacgg 409 ||||| |||||||||| || |||||||||||||||||||||| ||||||||||||||| | Sbjct: 10611 cgatcttggtgaagacgtcgagcggggaggagttccacggcgccaagtgcatcatcacag 10670 Query: 410 tgggcgcgcgggcgagcaagctggtgaagtcggtcaccggcgccgacctgcc-gtgcagc 468 |||||||| ||||||||||||| || ||||||||| |||||| ||||||||| ||||||| Sbjct: 10671 tgggcgcgtgggcgagcaagcttgtcaagtcggtcgccggcgtcgacctgccagtgcagc 10730 Query: 469 cg 470 || Sbjct: 10731 cg 10732 Score = 79.8 bits (40), Expect = 8e-12 Identities = 118/144 (81%) Strand = Plus / Plus Query: 197 tgccggaggggtgggccgcggcgaccagcgggccggccggtgtgataaaggcgaccaagg 256 |||| ||||||||| | ||||||| ||||| || | ||| || || ||||| ||||||| Sbjct: 10078 tgcccgaggggtggacggcggcgagcagcgagctcggcggcgtcatcaaggccaccaagg 10137 Query: 257 cgatggccatgttccaaacgctcgccgccaagatgggcgccgtcgtgagggacagggcgg 316 || | ||||||||||| ||||||||||||||| |||||||| | ||||||||| ||| Sbjct: 10138 cggttgccatgttccagtcgctcgccgccaagaacggcgccgtgctcagggacaggacgg 10197 Query: 317 aggtggtagacgtcgccaggcaag 340 ||||| | ||| |||||| ||||| Sbjct: 10198 aggtgatcgacatcgccaagcaag 10221
>emb|AL732647.4|CNS08C9M Oryza sativa chromosome 12, . BAC OSJNBb0087J18 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 121592 Score = 147 bits (74), Expect = 4e-32 Identities = 111/122 (90%), Gaps = 1/122 (0%) Strand = Plus / Minus Query: 350 cgatcgtggtgaagacatcaagcggggaggagttccacggcggcaagtgcatcatcacgg 409 ||||| |||||||||| || |||||||||||||||||||||| ||||||||||||||| | Sbjct: 18849 cgatcttggtgaagacgtcgagcggggaggagttccacggcgccaagtgcatcatcacag 18790 Query: 410 tgggcgcgcgggcgagcaagctggtgaagtcggtcaccggcgccgacctgcc-gtgcagc 468 |||||||| ||||||||||||| || ||||||||| |||||| ||||||||| ||||||| Sbjct: 18789 tgggcgcgtgggcgagcaagcttgtcaagtcggtcgccggcgtcgacctgccagtgcagc 18730 Query: 469 cg 470 || Sbjct: 18729 cg 18728 Score = 79.8 bits (40), Expect = 8e-12 Identities = 118/144 (81%) Strand = Plus / Minus Query: 197 tgccggaggggtgggccgcggcgaccagcgggccggccggtgtgataaaggcgaccaagg 256 |||| ||||||||| | ||||||| ||||| || | ||| || || ||||| ||||||| Sbjct: 19382 tgcccgaggggtggacggcggcgagcagcgagctcggcggcgtcatcaaggccaccaagg 19323 Query: 257 cgatggccatgttccaaacgctcgccgccaagatgggcgccgtcgtgagggacagggcgg 316 || | ||||||||||| ||||||||||||||| |||||||| | ||||||||| ||| Sbjct: 19322 cggttgccatgttccagtcgctcgccgccaagaacggcgccgtgctcagggacaggacgg 19263 Query: 317 aggtggtagacgtcgccaggcaag 340 ||||| | ||| |||||| ||||| Sbjct: 19262 aggtgatcgacatcgccaagcaag 19239
>gb|BT016536.1| Zea mays clone Contig369 mRNA sequence Length = 1567 Score = 93.7 bits (47), Expect = 5e-16 Identities = 65/71 (91%) Strand = Plus / Plus Query: 19 cgcctctggcacgacgccgagcgcgacgccggctacaccgtgctcacgcccaccccgcac 78 ||||||||| |||| ||| || ||||||||| ||||||||||||||||||||||||||| Sbjct: 314 cgcctctgggacgaggcccaggccgacgccgggtacaccgtgctcacgcccaccccgcac 373 Query: 79 ctcgacctggg 89 ||||||||||| Sbjct: 374 ctcgacctggg 384 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 244 aaggcgaccaaggcgatggccatgttccaaacgctcgccgccaagatgggcgccgtcgtg 303 ||||| |||||||| ||||||||||||| ||||||||| ||||| ||||||||| | Sbjct: 539 aaggccaccaaggccgtggccatgttccaggcgctcgccgtcaagagaggcgccgtcctc 598 Query: 304 agggacagggcggaggtggt 323 | ||||||| | |||||||| Sbjct: 599 aaggacaggactgaggtggt 618 Score = 44.1 bits (22), Expect = 0.42 Identities = 76/94 (80%) Strand = Plus / Plus Query: 357 ggtgaagacatcaagcggggaggagttccacggcggcaagtgcatcatcacggtgggcgc 416 ||||| ||| || ||||| ||||||||||||||| || ||||| | || |||||||| Sbjct: 667 ggtgaggacgtccagcggcgaggagttccacggcacgaaatgcatagtgacagtgggcgc 726 Query: 417 gcgggcgagcaagctggtgaagtcggtcaccggc 450 || ||||||||||| | |||||||| |||||| Sbjct: 727 atggacgagcaagctgatcaagtcggtgaccggc 760
>gb|AY106340.1| Zea mays PCO143515 mRNA sequence Length = 1558 Score = 93.7 bits (47), Expect = 5e-16 Identities = 65/71 (91%) Strand = Plus / Plus Query: 19 cgcctctggcacgacgccgagcgcgacgccggctacaccgtgctcacgcccaccccgcac 78 ||||||||| |||| ||| || ||||||||| ||||||||||||||||||||||||||| Sbjct: 315 cgcctctgggacgaggcccaggccgacgccgggtacaccgtgctcacgcccaccccgcac 374 Query: 79 ctcgacctggg 89 ||||||||||| Sbjct: 375 ctcgacctggg 385 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 244 aaggcgaccaaggcgatggccatgttccaaacgctcgccgccaagatgggcgccgtcgtg 303 ||||| |||||||| ||||||||||||| ||||||||| ||||| ||||||||| | Sbjct: 540 aaggccaccaaggccgtggccatgttccaggcgctcgccgtcaagagaggcgccgtcctc 599 Query: 304 agggacagggcggaggtggt 323 | ||||||| | |||||||| Sbjct: 600 aaggacaggactgaggtggt 619 Score = 44.1 bits (22), Expect = 0.42 Identities = 76/94 (80%) Strand = Plus / Plus Query: 357 ggtgaagacatcaagcggggaggagttccacggcggcaagtgcatcatcacggtgggcgc 416 ||||| ||| || ||||| ||||||||||||||| || ||||| | || |||||||| Sbjct: 668 ggtgaggacgtccagcggcgaggagttccacggcacgaaatgcatagtgacagtgggcgc 727 Query: 417 gcgggcgagcaagctggtgaagtcggtcaccggc 450 || ||||||||||| | |||||||| |||||| Sbjct: 728 atggacgagcaagctgatcaagtcggtgaccggc 761
>ref|NM_183735.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1245 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Plus Query: 247 gcgaccaaggcgatggccatgttccaaacgctcgccgccaagatgggcgccgtcgtgagg 306 |||||||||||| ||||||||||||| ||||||||| |||| |||||||||||| ||| Sbjct: 484 gcgaccaaggcggtggccatgttccaggcgctcgccgtcaaggggggcgccgtcgtcagg 543 Query: 307 gacagggcggaggt 320 |||| |||||||| Sbjct: 544 gacaacgcggaggt 557 Score = 73.8 bits (37), Expect = 5e-10 Identities = 70/81 (86%) Strand = Plus / Plus Query: 371 gcggggaggagttccacggcggcaagtgcatcatcacggtgggcgcgcgggcgagcaagc 430 |||| |||||||||||||||| ||||||| || | ||||||||||| || ||||||||| Sbjct: 611 gcggcgaggagttccacggcgccaagtgcgtcgtgacggtgggcgcctggacgagcaagc 670 Query: 431 tggtgaagtcggtcaccggcg 451 |||| ||||| ||| |||||| Sbjct: 671 tggtcaagtccgtcgccggcg 691
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Minus Query: 247 gcgaccaaggcgatggccatgttccaaacgctcgccgccaagatgggcgccgtcgtgagg 306 |||||||||||| ||||||||||||| ||||||||| |||| |||||||||||| ||| Sbjct: 11928033 gcgaccaaggcggtggccatgttccaggcgctcgccgtcaaggggggcgccgtcgtcagg 11927974 Query: 307 gacagggcggaggt 320 |||| |||||||| Sbjct: 11927973 gacaacgcggaggt 11927960 Score = 73.8 bits (37), Expect = 5e-10 Identities = 70/81 (86%) Strand = Plus / Minus Query: 371 gcggggaggagttccacggcggcaagtgcatcatcacggtgggcgcgcgggcgagcaagc 430 |||| |||||||||||||||| ||||||| || | ||||||||||| || ||||||||| Sbjct: 11927906 gcggcgaggagttccacggcgccaagtgcgtcgtgacggtgggcgcctggacgagcaagc 11927847 Query: 431 tggtgaagtcggtcaccggcg 451 |||| ||||| ||| |||||| Sbjct: 11927846 tggtcaagtccgtcgccggcg 11927826
>dbj|AP003535.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1012D10 Length = 168267 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Minus Query: 247 gcgaccaaggcgatggccatgttccaaacgctcgccgccaagatgggcgccgtcgtgagg 306 |||||||||||| ||||||||||||| ||||||||| |||| |||||||||||| ||| Sbjct: 140318 gcgaccaaggcggtggccatgttccaggcgctcgccgtcaaggggggcgccgtcgtcagg 140259 Query: 307 gacagggcggaggt 320 |||| |||||||| Sbjct: 140258 gacaacgcggaggt 140245 Score = 73.8 bits (37), Expect = 5e-10 Identities = 70/81 (86%) Strand = Plus / Minus Query: 371 gcggggaggagttccacggcggcaagtgcatcatcacggtgggcgcgcgggcgagcaagc 430 |||| |||||||||||||||| ||||||| || | ||||||||||| || ||||||||| Sbjct: 140191 gcggcgaggagttccacggcgccaagtgcgtcgtgacggtgggcgcctggacgagcaagc 140132 Query: 431 tggtgaagtcggtcaccggcg 451 |||| ||||| ||| |||||| Sbjct: 140131 tggtcaagtccgtcgccggcg 140111
>ref|XM_481905.1| Oryza sativa (japonica cultivar-group), mRNA Length = 303 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 371 gcggggaggagttccacggcggcaagtgcatcatcacggtgggcgcgcgggcgagcaagc 430 |||| |||||||||||||||| ||||||||| | |||||||||| || ||||||||| Sbjct: 236 gcggcgaggagttccacggcgctaagtgcatcgtgacggtgggcgtctggacgagcaagc 177 Query: 431 tggt 434 |||| Sbjct: 176 tggt 173
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 371 gcggggaggagttccacggcggcaagtgcatcatcacggtgggcgcgcgggcgagcaagc 430 |||| |||||||||||||||| ||||||||| | |||||||||| || ||||||||| Sbjct: 16295559 gcggcgaggagttccacggcgctaagtgcatcgtgacggtgggcgtctggacgagcaagc 16295500 Query: 431 tggt 434 |||| Sbjct: 16295499 tggt 16295496 Score = 42.1 bits (21), Expect = 1.6 Identities = 54/65 (83%) Strand = Plus / Minus Query: 370 agcggggaggagttccacggcggcaagtgcatcatcacggtgggcgcgcgggcgagcaag 429 ||||| |||| ||||||||||| |||||| || | ||||||||||| | |||||||| Sbjct: 15922650 agcggcgaggtgttccacggcgctaagtgcgtcgtgacggtgggcgcctagacgagcaag 15922591 Query: 430 ctggt 434 ||||| Sbjct: 15922590 ctggt 15922586
>dbj|AP005520.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0426E02 Length = 166985 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 371 gcggggaggagttccacggcggcaagtgcatcatcacggtgggcgcgcgggcgagcaagc 430 |||| |||||||||||||||| ||||||||| | |||||||||| || ||||||||| Sbjct: 1411 gcggcgaggagttccacggcgctaagtgcatcgtgacggtgggcgtctggacgagcaagc 1352 Query: 431 tggt 434 |||| Sbjct: 1351 tggt 1348
>dbj|AP005096.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1104G07 Length = 119643 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 371 gcggggaggagttccacggcggcaagtgcatcatcacggtgggcgcgcgggcgagcaagc 430 |||| |||||||||||||||| ||||||||| | |||||||||| || ||||||||| Sbjct: 85737 gcggcgaggagttccacggcgctaagtgcatcgtgacggtgggcgtctggacgagcaagc 85678 Query: 431 tggt 434 |||| Sbjct: 85677 tggt 85674
>gb|BT018493.1| Zea mays clone EL01N0425H03.d mRNA sequence Length = 1475 Score = 44.1 bits (22), Expect = 0.42 Identities = 52/62 (83%) Strand = Plus / Plus Query: 371 gcggggaggagttccacggcggcaagtgcatcatcacggtgggcgcgcgggcgagcaagc 430 |||| |||| ||||| ||||| || |||| || |||||||||||||| ||||| ||||| Sbjct: 689 gcggcgaggcgttccgcggcgccaggtgcgtcgtcacggtgggcgcgtgggcggccaagc 748 Query: 431 tg 432 || Sbjct: 749 tg 750
>gb|AE005903.1| Caulobacter crescentus CB15 section 229 of 359 of the complete genome Length = 11684 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 105 ggccttcgtcgccgccatcgcc 126 |||||||||||||||||||||| Sbjct: 1117 ggccttcgtcgccgccatcgcc 1096
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 32 acgccgagcgcgacgccggcta 53 |||||||||||||||||||||| Sbjct: 2963367 acgccgagcgcgacgccggcta 2963388
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 114 cgccgccatcgccaacggcggcgcc 138 |||||||||||||||||||| |||| Sbjct: 3019819 cgccgccatcgccaacggcgacgcc 3019843 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 cggtcaccggcgccgacctg 459 |||||||||||||||||||| Sbjct: 1555208 cggtcaccggcgccgacctg 1555227
>emb|BX248343.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 10/14 Length = 307550 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 114 cgccgccatcgccaacggcggcgcc 138 |||||||||||||||||||| |||| Sbjct: 164018 cgccgccatcgccaacggcgacgcc 164042
>emb|AJ811516.1| Uncultured bacterium partial nirS gene for putative dissimilatory nitrite reductase, clone AC100-108 Length = 839 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 cgacgccggctacaccgtgct 62 ||||||||||||||||||||| Sbjct: 629 cgacgccggctacaccgtgct 649
>emb|AJ811514.1| Uncultured bacterium partial nirS gene for putative dissimilatory nitrite reductase, clone AC100-102 Length = 839 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 cgacgccggctacaccgtgct 62 ||||||||||||||||||||| Sbjct: 629 cgacgccggctacaccgtgct 649
>emb|AJ811513.1| Uncultured bacterium partial nirS gene for putative dissimilatory nitrite reductase, clone AC100-95 Length = 839 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 cgacgccggctacaccgtgct 62 ||||||||||||||||||||| Sbjct: 629 cgacgccggctacaccgtgct 649
>emb|AJ811512.1| Uncultured bacterium partial nirS gene for putative dissimilatory nitrite reductase, clone AC100-94 Length = 839 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 cgacgccggctacaccgtgct 62 ||||||||||||||||||||| Sbjct: 629 cgacgccggctacaccgtgct 649
>emb|AJ811511.1| Uncultured bacterium partial nirS gene for putative dissimilatory nitrite reductase, clone AC100-93 Length = 839 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 cgacgccggctacaccgtgct 62 ||||||||||||||||||||| Sbjct: 629 cgacgccggctacaccgtgct 649
>emb|AJ811510.1| Uncultured bacterium partial nirS gene for putative dissimilatory nitrite reductase, clone AC100-91A Length = 839 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 cgacgccggctacaccgtgct 62 ||||||||||||||||||||| Sbjct: 629 cgacgccggctacaccgtgct 649
>emb|AJ811508.1| Uncultured bacterium partial nirS gene for putative dissimilatory nitrite reductase, clone AC100-83 Length = 839 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 cgacgccggctacaccgtgct 62 ||||||||||||||||||||| Sbjct: 629 cgacgccggctacaccgtgct 649
>emb|AJ811506.1| Uncultured bacterium partial nirS gene for putative dissimilatory nitrite reductase, clone AC100-78 Length = 839 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 cgacgccggctacaccgtgct 62 ||||||||||||||||||||| Sbjct: 629 cgacgccggctacaccgtgct 649
>emb|AJ811504.1| Uncultured bacterium partial nirS gene for putative dissimilatory nitrite reductase, clone AC100-66 Length = 839 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 cgacgccggctacaccgtgct 62 ||||||||||||||||||||| Sbjct: 629 cgacgccggctacaccgtgct 649
>emb|AJ811503.1| Uncultured bacterium partial nirS gene for putative dissimilatory nitrite reductase, clone AC100-65 Length = 839 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 cgacgccggctacaccgtgct 62 ||||||||||||||||||||| Sbjct: 629 cgacgccggctacaccgtgct 649
>emb|AJ811501.1| Uncultured bacterium partial nirS gene for putative dissimilatory nitrite reductase, clone AC100-62A Length = 839 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 cgacgccggctacaccgtgct 62 ||||||||||||||||||||| Sbjct: 629 cgacgccggctacaccgtgct 649
>emb|AJ811500.1| Uncultured bacterium partial nirS gene for putative dissimilatory nitrite reductase, clone AC100-62 Length = 839 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 cgacgccggctacaccgtgct 62 ||||||||||||||||||||| Sbjct: 629 cgacgccggctacaccgtgct 649
>emb|AJ811499.1| Uncultured bacterium partial nirS gene for putative dissimilatory nitrite reductase, clone AC100-60 Length = 839 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 cgacgccggctacaccgtgct 62 ||||||||||||||||||||| Sbjct: 629 cgacgccggctacaccgtgct 649
>emb|AJ811498.1| Uncultured bacterium partial nirS gene for putative dissimilatory nitrite reductase, clone AC100-58 Length = 839 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 cgacgccggctacaccgtgct 62 ||||||||||||||||||||| Sbjct: 629 cgacgccggctacaccgtgct 649
>emb|AJ811496.1| Uncultured bacterium partial nirS gene for putative dissimilatory nitrite reductase, clone AC100-50 Length = 839 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 cgacgccggctacaccgtgct 62 ||||||||||||||||||||| Sbjct: 629 cgacgccggctacaccgtgct 649
>emb|AJ811495.1| Uncultured bacterium partial nirS gene for putative dissimilatory nitrite reductase, clone AC100-48 Length = 839 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 cgacgccggctacaccgtgct 62 ||||||||||||||||||||| Sbjct: 629 cgacgccggctacaccgtgct 649
>emb|AJ811494.1| Uncultured bacterium partial nirS gene for putative dissimilatory nitrite reductase, clone AC100-45 Length = 839 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 cgacgccggctacaccgtgct 62 ||||||||||||||||||||| Sbjct: 629 cgacgccggctacaccgtgct 649
>emb|AJ811490.1| Uncultured bacterium partial nirS gene for putative dissimilatory nitrite reductase, clone AC100-39 Length = 839 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 cgacgccggctacaccgtgct 62 ||||||||||||||||||||| Sbjct: 629 cgacgccggctacaccgtgct 649
>emb|AJ811488.1| Uncultured bacterium partial nirS gene for putative dissimilatory nitrite reductase, clone AC100-37 Length = 839 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 cgacgccggctacaccgtgct 62 ||||||||||||||||||||| Sbjct: 629 cgacgccggctacaccgtgct 649
>emb|AJ811485.1| Uncultured bacterium partial nirS gene for putative dissimilatory nitrite reductase, clone AC100-31 Length = 839 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 cgacgccggctacaccgtgct 62 ||||||||||||||||||||| Sbjct: 629 cgacgccggctacaccgtgct 649
>emb|AJ811483.1| Uncultured bacterium partial nirS gene for putative dissimilatory nitrite reductase, clone AC100-24 Length = 839 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 cgacgccggctacaccgtgct 62 ||||||||||||||||||||| Sbjct: 629 cgacgccggctacaccgtgct 649
>emb|AJ811481.1| Uncultured bacterium partial nirS gene for putative dissimilatory nitrite reductase, clone AC100-17 Length = 839 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 cgacgccggctacaccgtgct 62 ||||||||||||||||||||| Sbjct: 629 cgacgccggctacaccgtgct 649
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 120 catcgccaacggcggcgccagcgagctcg 148 |||||||| ||||||||||| |||||||| Sbjct: 1602797 catcgccaccggcggcgccaccgagctcg 1602825
>emb|X98350.1|GAHBC G.aeglefinus mRNA for haemoglobin beta-chain Length = 438 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 278 tcgccgccaagatgggcgccg 298 ||||||||||||||||||||| Sbjct: 341 tcgccgccaagatgggcgccg 361
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 97 gacgggccggccttcgtcgccgcca 121 ||||| ||||||||||||||||||| Sbjct: 444191 gacggcccggccttcgtcgccgcca 444215
>emb|BX842580.1| Mycobacterium tuberculosis H37Rv complete genome; segment 9/13 Length = 346051 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 114 cgccgccatcgccaacggcggcgcc 138 |||||||||||||||||||| |||| Sbjct: 251846 cgccgccatcgccaacggcgacgcc 251870
>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16 Length = 348624 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 gccggccttcgtcgccgccat 122 ||||||||||||||||||||| Sbjct: 134149 gccggccttcgtcgccgccat 134129
>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14 Length = 348014 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 31 gacgccgagcgcgacgccggc 51 ||||||||||||||||||||| Sbjct: 134950 gacgccgagcgcgacgccggc 134930
>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14 Length = 348866 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 gccggccttcgtcgccgccat 122 ||||||||||||||||||||| Sbjct: 246519 gccggccttcgtcgccgccat 246499
>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12 Length = 348934 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 31 gacgccgagcgcgacgccggc 51 ||||||||||||||||||||| Sbjct: 57310 gacgccgagcgcgacgccggc 57290
>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12 Length = 347071 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 gccggccttcgtcgccgccat 122 ||||||||||||||||||||| Sbjct: 231177 gccggccttcgtcgccgccat 231157
>emb|AJ440494.1|IBA440494 Pseudomonas sp. BA2.5 partial nirS gene for nitrite reductase, isolate BA2.5 Length = 830 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 cgacgccggctacaccgtgct 62 ||||||||||||||||||||| Sbjct: 625 cgacgccggctacaccgtgct 645
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 cgccatcgccaacggcggcgc 137 ||||||||||||||||||||| Sbjct: 545549 cgccatcgccaacggcggcgc 545569 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 cttcgtcgccgccatcgcca 127 |||||||||||||||||||| Sbjct: 318756 cttcgtcgccgccatcgcca 318775
>dbj|AP005512.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0012O03 Length = 141860 Score = 42.1 bits (21), Expect = 1.6 Identities = 54/65 (83%) Strand = Plus / Minus Query: 370 agcggggaggagttccacggcggcaagtgcatcatcacggtgggcgcgcgggcgagcaag 429 ||||| |||| ||||||||||| |||||| || | ||||||||||| | |||||||| Sbjct: 102693 agcggcgaggtgttccacggcgctaagtgcgtcgtgacggtgggcgcctagacgagcaag 102634 Query: 430 ctggt 434 ||||| Sbjct: 102633 ctggt 102629
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 206 ggtgggccgcggcgaccagcgggcc 230 |||| |||||||||||||||||||| Sbjct: 383211 ggtgcgccgcggcgaccagcgggcc 383187 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 cgccatcgccaacggcggcg 136 |||||||||||||||||||| Sbjct: 1289702 cgccatcgccaacggcggcg 1289721 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 99 cgggccggccttcgtcgccgccatcgcc 126 |||||| || |||||||||||||||||| Sbjct: 892709 cgggcccgcgttcgtcgccgccatcgcc 892682
>emb|AJ628421.2| Micromonospora olivasterospora fortimicin biosynthesis gene cluster, strain DSM 43868 Length = 47238 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 210 ggccgcggcgaccagcgggccggcc 234 ||||||||||||||||||| ||||| Sbjct: 3285 ggccgcggcgaccagcgggacggcc 3261
>ref|XM_474606.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 918 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 ccttcgtcgccgccatcgcc 126 |||||||||||||||||||| Sbjct: 835 ccttcgtcgccgccatcgcc 816
>gb|AY023162.1| Oryza sativa microsatellite MRG5487 containing (GCG)X8, genomic sequence Length = 224 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 ccttcgtcgccgccatcgcc 126 |||||||||||||||||||| Sbjct: 8 ccttcgtcgccgccatcgcc 27
>gb|AY632751.1| Mycobacterium avium esterase (lipL) gene, complete cds Length = 1287 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 cgccatcgccaacggcggcg 136 |||||||||||||||||||| Sbjct: 888 cgccatcgccaacggcggcg 907
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 cgacgccgagcgcgacgccg 49 |||||||||||||||||||| Sbjct: 2352202 cgacgccgagcgcgacgccg 2352221
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 gccttcgtcgccgccatcgc 125 |||||||||||||||||||| Sbjct: 247271 gccttcgtcgccgccatcgc 247252
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 cgacgccgagcgcgacgccg 49 |||||||||||||||||||| Sbjct: 392511 cgacgccgagcgcgacgccg 392530
>ref|XM_983991.1| PREDICTED: Mus musculus SRY-box containing gene 30 (Sox30), mRNA Length = 2196 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cggaggggtgggccgcggcg 219 |||||||||||||||||||| Sbjct: 300 cggaggggtgggccgcggcg 281
>ref|XM_751870.1| Ustilago maydis 521 hypothetical protein (UM00816.1) partial mRNA Length = 1080 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 261 ggccatgttccaaacgctcgccgccaag 288 ||||||| |||| ||||||||||||||| Sbjct: 186 ggccatgatccacacgctcgccgccaag 213
>emb|AL158205.12| Human DNA sequence from clone RP11-177F4 on chromosome 9 Contains a CpG island, complete sequence Length = 68171 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 gtcgccaggcaagaaggaaa 347 |||||||||||||||||||| Sbjct: 5458 gtcgccaggcaagaaggaaa 5477
>emb|BX842576.1| Mycobacterium tuberculosis H37Rv complete genome; segment 5/13 Length = 348264 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 cggtcaccggcgccgacctg 459 |||||||||||||||||||| Sbjct: 172307 cggtcaccggcgccgacctg 172326
>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12 Length = 349672 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 tcaccggcgccgacctgccg 462 |||||||||||||||||||| Sbjct: 248948 tcaccggcgccgacctgccg 248929
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 cgacgccgagcgcgacgccg 49 |||||||||||||||||||| Sbjct: 202235 cgacgccgagcgcgacgccg 202254
>emb|BX248338.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 5/14 Length = 299450 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 cggtcaccggcgccgacctg 459 |||||||||||||||||||| Sbjct: 237429 cggtcaccggcgccgacctg 237448
>emb|AL663013.4|OSJN00214 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089K06, complete sequence Length = 129608 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 ccttcgtcgccgccatcgcc 126 |||||||||||||||||||| Sbjct: 37042 ccttcgtcgccgccatcgcc 37061
>emb|AJ576039.1|GWE576039 Gordonia westfalica strain DSM44215T plasmid pKB1 complete genome Length = 101016 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 ccggccttcgtcgccgccatcgcc 126 |||||||||||||| ||||||||| Sbjct: 25070 ccggccttcgtcgcagccatcgcc 25093
>emb|AL645948.10| Mouse DNA sequence from clone RP23-298M7 on chromosome 11 Contains an H+ transporting ATP synthase mitochondrial F0 complex subunit g (Atp5l) pseudogene, a ferritin light chain 1 (Ftl1) pseudogene, three novel genes, the gene for a novel ENTH domain containing protein, the 5' end of the Sox30 gene for SRY-box containing gene 30 and three Cpg islands, complete sequence Length = 207877 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cggaggggtgggccgcggcg 219 |||||||||||||||||||| Sbjct: 204632 cggaggggtgggccgcggcg 204613
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 acgacgccgagcgcgacgcc 48 |||||||||||||||||||| Sbjct: 1246290 acgacgccgagcgcgacgcc 1246271
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 ccttcgtcgccgccatcgcc 126 |||||||||||||||||||| Sbjct: 4646909 ccttcgtcgccgccatcgcc 4646928
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 tcgtcgccgccatcgccaac 129 |||||||||||||||||||| Sbjct: 28801657 tcgtcgccgccatcgccaac 28801638 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 tcgtcgccgccatcgccaac 129 |||||||||||||||||||| Sbjct: 28797481 tcgtcgccgccatcgccaac 28797500
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 ggccggccttcgtcgccgcc 120 |||||||||||||||||||| Sbjct: 14550841 ggccggccttcgtcgccgcc 14550822
>gb|AF197466.1|AF197466 Pseudomonas fluorescens NirP (nirP), NirO (nirO), ATP/GTP binding protein (nirQ), cd1 nitrite reductase (nirS), and cytochrome c-551 (nirM) genes, complete cds Length = 3890 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 gacgccggctacaccgtgct 62 |||||||||||||||||||| Sbjct: 3280 gacgccggctacaccgtgct 3299
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 cgccgagcgcgacgccggct 52 |||||||||||||||||||| Sbjct: 4128940 cgccgagcgcgacgccggct 4128959
>gb|AY005801.1| Mus musculus Sox-30 mRNA, complete cds Length = 3074 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cggaggggtgggccgcggcg 219 |||||||||||||||||||| Sbjct: 85 cggaggggtgggccgcggcg 66
>gb|AC158486.2| Capitella capitata clone JGIAUTO-1A14, complete sequence Length = 34880 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 gacgtcgccaggcaagaagg 344 |||||||||||||||||||| Sbjct: 31404 gacgtcgccaggcaagaagg 31385
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 gccggctcgcgcaccgcctc 24 |||||||||||||||||||| Sbjct: 6014243 gccggctcgcgcaccgcctc 6014262 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 gaagtcggtcaccggcgccg 454 |||||||||||||||||||| Sbjct: 4438231 gaagtcggtcaccggcgccg 4438212
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0028E05 Length = 157631 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 tcgtcgccgccatcgccaac 129 |||||||||||||||||||| Sbjct: 109432 tcgtcgccgccatcgccaac 109413 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 tcgtcgccgccatcgccaac 129 |||||||||||||||||||| Sbjct: 105256 tcgtcgccgccatcgccaac 105275
>dbj|AP005653.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0075E08 Length = 130947 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 ggccggccttcgtcgccgcc 120 |||||||||||||||||||| Sbjct: 54857 ggccggccttcgtcgccgcc 54838
>gb|AF081810.1|AF081810 Lymantria dispar nucleopolyhedrovirus, complete genome Length = 161046 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 acggcggcaagtgcatcatc 405 |||||||||||||||||||| Sbjct: 27045 acggcggcaagtgcatcatc 27064
>emb|AL773560.9| Pig DNA sequence from clone XX-514B12, complete sequence Length = 107413 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 cagggtgccggaggggtggg 211 |||||||||||||||||||| Sbjct: 90782 cagggtgccggaggggtggg 90801
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 112 gtcgccgccatcgccaacggcggcgcca 139 ||||| ||||||||||| |||||||||| Sbjct: 1909010 gtcgcggccatcgccaaaggcggcgcca 1908983
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 cgacgccgagcgcgacgccg 49 |||||||||||||||||||| Sbjct: 186721 cgacgccgagcgcgacgccg 186740
>ref|NM_173384.1| Mus musculus SRY-box containing gene 30 (Sox30), mRNA Length = 3074 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cggaggggtgggccgcggcg 219 |||||||||||||||||||| Sbjct: 85 cggaggggtgggccgcggcg 66 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,729,976 Number of Sequences: 3902068 Number of extensions: 2729976 Number of successful extensions: 63893 Number of sequences better than 10.0: 89 Number of HSP's better than 10.0 without gapping: 90 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59796 Number of HSP's gapped (non-prelim): 4094 length of query: 482 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 460 effective length of database: 17,147,199,772 effective search space: 7887711895120 effective search space used: 7887711895120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)