ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast56d02 |
|---|---|
| Clone Library Name | barley_pub |
>CSKI2_HUMAN (Q8WXE0) Caskin-2| Length = 1202 Score = 34.3 bits (77), Expect = 0.16 Identities = 27/72 (37%), Positives = 33/72 (45%) Frame = +2 Query: 8 SATAGSRARTSTIRNPLAHSPPSLPFRA*AATPLLPSPHLYNRESGRPLPREAPRTGADR 187 S T G S++ P P SLP + TPL PSP + P+P P G + Sbjct: 1024 SPTPGESPPASSLPQP---EPSSLPAQG-VPTPLAPSPAMQP-----PVP-PCPGPGLES 1073 Query: 188 SAAQRSRGETNP 223 SAA R GET P Sbjct: 1074 SAASRWNGETEP 1085
>DYNA_XENLA (Q6PCJ1) Dynactin-1| Length = 1232 Score = 31.6 bits (70), Expect = 1.0 Identities = 19/64 (29%), Positives = 27/64 (42%) Frame = +2 Query: 8 SATAGSRARTSTIRNPLAHSPPSLPFRA*AATPLLPSPHLYNRESGRPLPREAPRTGADR 187 S++A S S ++ S PS P + A P++PSP PLP P + Sbjct: 118 SSSAASSGTASASCGEISSSEPSTPAQTPLAAPIIPSPSSAITSPVAPLPGPGPSKEEEN 177 Query: 188 SAAQ 199 AQ Sbjct: 178 LRAQ 181
>ATG13_EMENI (Q5BBK4) Autophagy-related protein 13| Length = 974 Score = 31.2 bits (69), Expect = 1.3 Identities = 25/78 (32%), Positives = 34/78 (43%) Frame = +2 Query: 8 SATAGSRARTSTIRNPLAHSPPSLPFRA*AATPLLPSPHLYNRESGRPLPREAPRTGADR 187 ++ G A + NP PS+ F+ A PL SP L + PL TGA R Sbjct: 415 ASPVGRAATLANDTNPNVARRPSISFQPFKAPPLSASPSLVD----PPLSASPRTTGAGR 470 Query: 188 SAAQRSRGETNPSPPSTT 241 ++ SR + PPS T Sbjct: 471 TSLSDSR---HMPPPSVT 485
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 30.8 bits (68), Expect = 1.8 Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 3/79 (3%) Frame = +2 Query: 35 TSTIRNPLAHSPPSLPFRA*AATPLLPSPHLYNRESGRPLPREAPRT--GADRSAAQRSR 208 T+T P A S P A T P P+ GR LP +P T A SA Sbjct: 3390 TTTATTPAATSSTVTPSSALGTTHTPPVPNTTATTHGRSLPPSSPHTVPTAWTSATSGIL 3449 Query: 209 GETNPSPPST-TVHRASLT 262 G T+ + PST T H + T Sbjct: 3450 GTTHITEPSTGTSHTPAAT 3468 Score = 30.4 bits (67), Expect = 2.3 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 3/81 (3%) Frame = +2 Query: 8 SATAGSRARTSTIRNP---LAHSPPSLPFRA*AATPLLPSPHLYNRESGRPLPREAPRTG 178 SAT+G+ T+ I P +H+P + +TP L SPH +R + P P T Sbjct: 3972 SATSGTLG-TTHITEPSTGTSHTPAATTGTTTTSTPALSSPHPSSRTTESP-PSPGTTTP 4029 Query: 179 ADRSAAQRSRGETNPSPPSTT 241 +A R+ PS T+ Sbjct: 4030 GHTTATSRTTATATPSKTRTS 4050 Score = 30.4 bits (67), Expect = 2.3 Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 7/92 (7%) Frame = +2 Query: 8 SATAGSR----ARTSTIRNPLAHSPPSLPFRA*AATPLLPSPHLYNRESGRPLPREAPRT 175 S+T G+R T+T P A S P A T P P+ GR L +P T Sbjct: 2679 SSTPGTRPIPPVLTTTATTPAATSSTVTPSSALGTTHTPPVPNTTATTHGRSLSPSSPHT 2738 Query: 176 --GADRSAAQRSRGETNPSPPST-TVHRASLT 262 A SA + G T+ + PST T H + T Sbjct: 2739 VRTAWTSATSGTLGTTHITEPSTGTSHTPAAT 2770 Score = 29.6 bits (65), Expect = 3.9 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 3/81 (3%) Frame = +2 Query: 8 SATAGSRARTSTIRNP---LAHSPPSLPFRA*AATPLLPSPHLYNRESGRPLPREAPRTG 178 SAT+G+ T+ I P +H+P + +TP L SPH +R + P P T Sbjct: 2745 SATSGTLG-TTHITEPSTGTSHTPAATTGTTQHSTPALSSPHPSSRTTESP-PSPGTTTP 2802 Query: 179 ADRSAAQRSRGETNPSPPSTT 241 +A R+ PS T+ Sbjct: 2803 GHTTATSRTTATATPSKTRTS 2823 Score = 28.9 bits (63), Expect = 6.7 Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 3/79 (3%) Frame = +2 Query: 35 TSTIRNPLAHSPPSLPFRA*AATPLLPSPHLYNRESGRPLPREAPRT--GADRSAAQRSR 208 T+T P A S P A T P P+ GR L +P T A SA + Sbjct: 3919 TTTATTPAATSSTVTPSSALGTTHTPPVPNTTATTHGRSLSPSSPHTVRTAWTSATSGTL 3978 Query: 209 GETNPSPPST-TVHRASLT 262 G T+ + PST T H + T Sbjct: 3979 GTTHITEPSTGTSHTPAAT 3997 Score = 28.5 bits (62), Expect = 8.7 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 3/81 (3%) Frame = +2 Query: 8 SATAGSRARTSTIRNP---LAHSPPSLPFRA*AATPLLPSPHLYNRESGRPLPREAPRTG 178 SAT+G T+ I P +H+P + +TP L SPH +R + P P T Sbjct: 2216 SATSGILG-TTHITEPSTGTSHTPAATTGTTQHSTPALSSPHPSSRTTESP-PSPGTTTP 2273 Query: 179 ADRSAAQRSRGETNPSPPSTT 241 +A R+ PS T+ Sbjct: 2274 GHTTATSRTTATATPSKTRTS 2294
>HAM_DROME (Q8I7Z8) Transcription factor hamlet| Length = 990 Score = 30.8 bits (68), Expect = 1.8 Identities = 13/43 (30%), Positives = 23/43 (53%) Frame = +2 Query: 110 LPSPHLYNRESGRPLPREAPRTGADRSAAQRSRGETNPSPPST 238 +P H + E G+PL + A+ S +Q+S ++P+P T Sbjct: 658 MPRLHEFEAERGQPLKMRKSHSSAESSTSQKSHKGSSPTPTPT 700
>IF2_TROWT (Q83GT8) Translation initiation factor IF-2| Length = 803 Score = 30.8 bits (68), Expect = 1.8 Identities = 19/59 (32%), Positives = 29/59 (49%) Frame = +2 Query: 62 HSPPSLPFRA*AATPLLPSPHLYNRESGRPLPREAPRTGADRSAAQRSRGETNPSPPST 238 H+PP+ A P LP P + R + R +P APR G + A ++ G+ P+T Sbjct: 74 HTPPAPVVETPKAPPPLPRPII--RHAVRGVPSGAPRPGNNPYAPRQGMGQLATPGPAT 130
>IF2_TROW8 (Q83HG7) Translation initiation factor IF-2| Length = 803 Score = 30.8 bits (68), Expect = 1.8 Identities = 19/59 (32%), Positives = 29/59 (49%) Frame = +2 Query: 62 HSPPSLPFRA*AATPLLPSPHLYNRESGRPLPREAPRTGADRSAAQRSRGETNPSPPST 238 H+PP+ A P LP P + R + R +P APR G + A ++ G+ P+T Sbjct: 74 HTPPAPVVETPKAPPPLPRPII--RHAVRGVPSGAPRPGNNPYAPRQGMGQLATPGPAT 130
>SDC3_MOUSE (Q64519) Syndecan-3 precursor (SYND3)| Length = 442 Score = 30.8 bits (68), Expect = 1.8 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 3/70 (4%) Frame = +2 Query: 29 ARTSTIRNPLAHSPPSLPFRA*AATPLLPSPHLYNRESGRPLPREAPRTGADRSAAQRSR 208 A T+ I P A SPP+ P +P L N + RP P T + A+RS Sbjct: 220 AATAKITTPAAPSPPTTVATLDTEAP---TPRLVNTATSRPQSLPRPITTQEPEVAERST 276 Query: 209 ---GETNPSP 229 G T P P Sbjct: 277 LPLGTTAPGP 286
>DDEF2_HUMAN (O43150) Development and differentiation-enhancing factor 2 (Pyk2| C-terminus-associated protein) (PAP) (Paxillin-associated protein with ARFGAP activity 3) (PAG3) Length = 1006 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/39 (43%), Positives = 22/39 (56%) Frame = +2 Query: 5 VSATAGSRARTSTIRNPLAHSPPSLPFRA*AATPLLPSP 121 VS GSR R+S+ +P A PP P R + PL P+P Sbjct: 810 VSVDGGSRQRSSS--DPPAVHPPLPPLRVTSTNPLTPTP 846
>US02_EHV1K (P32517) US1 protein| Length = 303 Score = 30.4 bits (67), Expect = 2.3 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +2 Query: 143 GRPLPREAPRTGADRSAAQRSRGETNPSPPSTTVHRAS 256 GRPLPR P G R+ +RSR P+P +T A+ Sbjct: 234 GRPLPRRRPSEGGMRAPRRRSRA---PAPARSTAAAAT 268
>SNX41_CRYNE (Q5KKB9) Sorting nexin-41| Length = 638 Score = 29.6 bits (65), Expect = 3.9 Identities = 26/81 (32%), Positives = 31/81 (38%), Gaps = 6/81 (7%) Frame = +2 Query: 35 TSTIRNPLAHSPPSLPFRA*AATPLLPSP------HLYNRESGRPLPREAPRTGADRSAA 196 + T NP A SPPS P + P LP P L + SG P P R A Sbjct: 3 SDTSPNPFASSPPSSP----SPRPSLPPPVPRKPSSLVSAASGSPPPTH--RASFPDPAR 56 Query: 197 QRSRGETNPSPPSTTVHRASL 259 G T P P T + S+ Sbjct: 57 HPKMGATVPGPKPKTGYCCSI 77
>WSP1_SCHPO (O36027) Wiskott-Aldrich syndrome homolog protein 1| Length = 574 Score = 29.6 bits (65), Expect = 3.9 Identities = 20/59 (33%), Positives = 24/59 (40%) Frame = +2 Query: 68 PPSLPFRA*AATPLLPSPHLYNRESGRPLPREAPRTGADRSAAQRSRGETNPSPPSTTV 244 PP P R+ AA + P P P PR AP TG SR +NP P + Sbjct: 338 PPPPPPRSNAAGSI-PLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAI 395 Score = 28.5 bits (62), Expect = 8.7 Identities = 22/62 (35%), Positives = 27/62 (43%) Frame = +2 Query: 50 NPLAHSPPSLPFRA*AATPLLPSPHLYNRESGRPLPREAPRTGADRSAAQRSRGETNPSP 229 N SPP+ P R A + P+ N S PLP + R A AA + R P P Sbjct: 261 NGTVSSPPNSPPRPIAPVSMNPA---INSTSKPPLPPPSSRVSAAALAANKKR-PPPPPP 316 Query: 230 PS 235 PS Sbjct: 317 PS 318
>SRPK1_HUMAN (Q96SB4) Serine/threonine-protein kinase SRPK1 (EC 2.7.11.1)| (Serine/arginine-rich protein-specific kinase 1) (SR-protein-specific kinase 1) (SFRS protein kinase 1) Length = 826 Score = 29.6 bits (65), Expect = 3.9 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Frame = +2 Query: 20 GSRARTSTIRNPLAH--SPPSLPFRA*AATPLLPSPHLYNRESGRPLPREAPRTG 178 G R R R PL +PP+ P RA P SP S +P PR+AP+ G Sbjct: 94 GGRRRPPPAR-PLTRPETPPAHPARALLCAPWAASPTPAASPSPQPPPRQAPQPG 147
>IF2C_PHAVU (P57997) Translation initiation factor IF-2, chloroplast precursor| (PvIF2cp) Length = 1012 Score = 29.3 bits (64), Expect = 5.1 Identities = 22/66 (33%), Positives = 27/66 (40%) Frame = +2 Query: 8 SATAGSRARTSTIRNPLAHSPPSLPFRA*AATPLLPSPHLYNRESGRPLPREAPRTGADR 187 S T G S R P PPS P P P P L ++ S P P + P D+ Sbjct: 225 SQTRGGEKVVSQTRAP---QPPSKPQPLKPQQPSKPQPALLSKPSIAPPPVKKPVVLRDK 281 Query: 188 SAAQRS 205 AA+ S Sbjct: 282 GAAETS 287
>HXA4_CHICK (P17277) Homeobox protein Hox-A4 (Chox-1.4)| Length = 309 Score = 29.3 bits (64), Expect = 5.1 Identities = 23/82 (28%), Positives = 31/82 (37%) Frame = +2 Query: 8 SATAGSRARTSTIRNPLAHSPPSLPFRA*AATPLLPSPHLYNRESGRPLPREAPRTGADR 187 S +AGS A +P H+PP P P PHL+ G LP PR + Sbjct: 27 SGSAGSSASYHP-HHPHPHAPPP--------PPPPPPPHLHAAHPGPALPEYFPRPRREP 77 Query: 188 SAAQRSRGETNPSPPSTTVHRA 253 + P PP ++ A Sbjct: 78 GYQAPAAPPGPPGPPPEALYPA 99
>IF2_MYCPA (Q73VV4) Translation initiation factor IF-2| Length = 925 Score = 29.3 bits (64), Expect = 5.1 Identities = 13/29 (44%), Positives = 14/29 (48%) Frame = +2 Query: 146 RPLPREAPRTGADRSAAQRSRGETNPSPP 232 RP+PR PR GA R A R PP Sbjct: 190 RPIPRPVPRPGAPRPGAPRPGASPGNMPP 218
>CTTB2_OTOGA (Q2QLG9) Cortactin-binding protein 2 (CortBP2)| Length = 1655 Score = 28.9 bits (63), Expect = 6.7 Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 8/87 (9%) Frame = +2 Query: 20 GSRARTSTIRNPLAHSPPSLPFRA*AATPLLPSPHLYNRE--SGRPLPREAPRTGADRSA 193 GS A + P + +PP AA P +PH ++ S P P PR A R Sbjct: 388 GSAAPPGSAAPPGSAAPPGS-----AAPPGSAAPHSFHSPCASAPPHPGLNPRIQAARFR 442 Query: 194 AQRS------RGETNPSPPSTTVHRAS 256 Q + G T PSPPS V S Sbjct: 443 FQGNANDPDQNGNTTPSPPSRDVSPTS 469
>MCR_AOTNA (Q3YC04) Mineralocorticoid receptor (MR)| Length = 984 Score = 28.9 bits (63), Expect = 6.7 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = +2 Query: 101 TPLLPSPHLYNRESGRPLPREAPRTGADRSAAQRSRGETNPSPPS 235 TPL SP++ NR S P A G+ S+ S + SPPS Sbjct: 233 TPLTCSPNVENRGSRSHSPAHASNVGSPLSSPLSSMKSSISSPPS 277
>WASF4_HUMAN (Q8IV90) Wiskott-Aldrich syndrome protein family member 4| (WASP-family protein member 4) Length = 625 Score = 28.9 bits (63), Expect = 6.7 Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Frame = +2 Query: 65 SPPSLPFRA*AATPLLPSPHLYNRESGRPLPREAPRTGADRSAAQRSRGETNPSPP--ST 238 +PP LP A P LP P L G P P P G + G+ PP T Sbjct: 491 APPPLPPPPAADYPTLPPPPLSQPTRGAPPPPPPPPPGPPPPPFTGADGQPAVPPPLSDT 550 Query: 239 TVHRASL 259 T ++SL Sbjct: 551 TKPKSSL 557
>MCR_SAISC (Q9N0W8) Mineralocorticoid receptor (MR)| Length = 982 Score = 28.9 bits (63), Expect = 6.7 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = +2 Query: 101 TPLLPSPHLYNRESGRPLPREAPRTGADRSAAQRSRGETNPSPPS 235 TPL SP++ NR S P A G+ S+ S + SPPS Sbjct: 232 TPLTCSPNVENRGSRSHSPAHASNVGSPLSSPLSSMKSSISSPPS 276
>CECR2_HUMAN (Q9BXF3) Cat eye syndrome critical region protein 2| Length = 1484 Score = 28.9 bits (63), Expect = 6.7 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%) Frame = +1 Query: 184 QKRSAAQPRRD--EPLPSLHHRPPGIPDSGG 270 + A +P D EPLP L +PPG+ S G Sbjct: 962 ENSEAQEPENDQAEPLPGLEEKPPGVGTSEG 992
>CAC1A_RAT (P54282) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide, isoform 4) (Brain calcium channel I) (BI) (RAT brain class A) (RBA-I) Length = 2212 Score = 28.9 bits (63), Expect = 6.7 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Frame = +2 Query: 50 NPLAHSPPSLPFRA*AATPLLPSP-HLYNRESGRPLPREAPRTGADRSAAQRSRGETNPS 226 N LA P+ P + + L PSP + N + P P+ A R +NP Sbjct: 1029 NKLATGEPASPHDSLGHSGLPPSPAKIGNSTNPGPALATNPQNAASRRTPNNPGNPSNPG 1088 Query: 227 PPST 238 PP T Sbjct: 1089 PPKT 1092
>DYNA_RAT (P28023) Dynactin-1 (150 kDa dynein-associated polypeptide)| (DP-150) (DAP-150) (p150-glued) Length = 1280 Score = 28.5 bits (62), Expect = 8.7 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +2 Query: 56 LAHSPPSLPFRA*AATPLLPSPHLYNRESGRPLP 157 L+ S PS P + A P++P+P L + + PLP Sbjct: 178 LSSSEPSTPAQTPLAAPIIPTPALTSPGAAPPLP 211
>DYNA_CHICK (P35458) Dynactin-1 (150 kDa dynein-associated polypeptide)| (DP-150) (DAP-150) (p150-glued) Length = 1224 Score = 28.5 bits (62), Expect = 8.7 Identities = 14/40 (35%), Positives = 19/40 (47%) Frame = +2 Query: 8 SATAGSRARTSTIRNPLAHSPPSLPFRA*AATPLLPSPHL 127 S TAG S ++ S PS P + P++PSP L Sbjct: 156 SGTAGPSGSASASGGEMSSSEPSTPAQTPLVAPVIPSPSL 195
>COG3_HUMAN (Q96JB2) Conserved oligomeric Golgi complex component 3 (Vesicle| docking protein SEC34 homolog) (p94) Length = 827 Score = 28.5 bits (62), Expect = 8.7 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = -3 Query: 391 PAEDMSCLLAMMRPTELTTFIPQAPRSDTAGGFFSAG 281 P ED+ L + P ELT+ +P++ GF S G Sbjct: 59 PIEDLCSLTSQSLPIELTSVVPESTEDILLKGFTSLG 95
>CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2164 Score = 28.5 bits (62), Expect = 8.7 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Frame = +2 Query: 50 NPLAHSPPSLPFRA*AATPLLPSP-HLYNRESGRPLPREAPRTGADRSAAQRSRGETNPS 226 N LA P+ P + + L PSP + N + P P+ A R +NP Sbjct: 981 NKLATGEPASPHDSLGHSGLPPSPAKIGNSTNPGPALATNPQNAASRRTPNNPGDPSNPG 1040 Query: 227 PPST 238 PP T Sbjct: 1041 PPKT 1044
>DYNA_MOUSE (O08788) Dynactin-1 (150 kDa dynein-associated polypeptide)| (DP-150) (DAP-150) (p150-glued) Length = 1281 Score = 28.5 bits (62), Expect = 8.7 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +2 Query: 56 LAHSPPSLPFRA*AATPLLPSPHLYNRESGRPLP 157 L+ S PS P + A P++P+P L + + PLP Sbjct: 178 LSSSEPSTPAQTPLAAPIIPTPALTSPGAAPPLP 211 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,608,355 Number of Sequences: 219361 Number of extensions: 875565 Number of successful extensions: 3368 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 3126 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3357 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
