ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast56d02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_507385.1| PREDICTED Oryza sativa (japonica cultivar-group... 248 1e-62
2ref|XM_506427.2| PREDICTED Oryza sativa (japonica cultivar-group... 248 1e-62
3dbj|AK102987.1| Oryza sativa (japonica cultivar-group) cDNA clon... 248 1e-62
4dbj|AK064035.1| Oryza sativa (japonica cultivar-group) cDNA clon... 248 1e-62
5gb|AY105059.1| Zea mays PCO143661 mRNA sequence 248 1e-62
6gb|AY596549.1| Saccharum officinarum clone SCBFLR1083F06, comple... 240 3e-60
7ref|XM_478881.1| Oryza sativa (japonica cultivar-group), mRNA 184 2e-43
8dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 184 2e-43
9dbj|AP004185.4| Oryza sativa (japonica cultivar-group) genomic D... 184 2e-43
10dbj|AP004276.3| Oryza sativa (japonica cultivar-group) genomic D... 184 2e-43
11gb|AC150512.3| Bos taurus BAC CH240-319N17 (Children's Hospital... 46 0.10
12emb|AJ006589.2|BPH6589 Bacteriophage phi-C31 complete genome 44 0.40
13emb|X76288.1|BPHIC31E Bacteriophage phi-C31 early region, virus ... 44 0.40
14gb|AC137745.4| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
15ref|XM_502339.1| Yarrowia lipolytica CLIB122, YALI0D02761g predi... 42 1.6
16emb|AL035703.21|HS61A9 Human DNA sequence from clone RP1-61A9 on... 42 1.6
17emb|CR602359.1| full-length cDNA clone CS0DD005YH10 of Neuroblas... 42 1.6
18gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 42 1.6
19gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.6
20emb|AL954212.1| Pan troglodytes chromosome 22 clone RP43-043L10 ... 42 1.6
21dbj|AK068468.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
22gb|U80601.1|HSU80601 Human novel unknown gene, partial 3'UTR, an... 42 1.6
23dbj|AP001453.6| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 1.6
24gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 42 1.6
25gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
26emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 42 1.6
27ref|XM_523402.1| PREDICTED: Pan troglodytes similar to hypotheti... 40 6.2
28ref|XM_480760.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.2
29ref|XM_478929.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.2
30gb|AY019856.1| Oryza sativa microsatellite MRG2181 containing (C... 40 6.2
31gb|AC096689.5| Oryza sativa chromosome 3 BAC OSJNBa0027J18 genom... 40 6.2
32ref|NM_018584.4| Homo sapiens calcium/calmodulin-dependent prote... 40 6.2
33gb|AC146187.2| Pan troglodytes BAC clone RP43-25A10 from 7, comp... 40 6.2
34gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.2
35ref|XM_977769.1| PREDICTED: Mus musculus hypothetical protein LO... 40 6.2
36gb|AC133503.4| Mus musculus BAC clone RP24-301O19 from chromosom... 40 6.2
37gb|AC117225.3| Mus musculus BAC clone RP23-366F3 from 19, comple... 40 6.2
38emb|AL391357.20| Human DNA sequence from clone RP11-401M16 on ch... 40 6.2
39emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete ... 40 6.2
40gb|AY204901.1| Homo sapiens calcium/calmodulin-dependent protein... 40 6.2
41gb|AC025571.20| Homo sapiens 3 BAC RP11-515C21 (Roswell Park Can... 40 6.2
42gb|AC009027.10| Homo sapiens chromosome 16 clone RP11-123C5, com... 40 6.2
43gb|AF342812.1|AF342812 Sus scrofa mannose-6-phosphate/insulin-li... 40 6.2
44gb|AC009131.6|AC009131 Homo sapiens chromosome 16 clone RP11-502... 40 6.2
45dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
46dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
47gb|AC021200.7| Homo sapiens BAC clone RP11-62B4 from 4, complete... 40 6.2
48gb|AC154224.1| Mus musculus BAC clone RP24-141J15 from chromosom... 40 6.2
49dbj|AP005149.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
50dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 6.2
51dbj|AP003799.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
52dbj|AP003985.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
53dbj|AK121704.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
54dbj|AK111800.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
55emb|AJ324422.1|HSA324422 Homo sapiens genomic sequence surroundi... 40 6.2
56dbj|AK099003.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
57gb|AC005746.1|AC005746 Homo sapiens chromosome 17, clone hRPK.33... 40 6.2
58emb|AL672106.9| Mouse DNA sequence from clone RP23-372E6 on chro... 40 6.2
59emb|AL772194.6| Mouse DNA sequence from clone RP23-331M18 on chr... 40 6.2 
>ref|XM_507385.1| PREDICTED Oryza sativa (japonica cultivar-group), P0453G03.28 mRNA
          Length = 1712

 Score =  248 bits (125), Expect = 1e-62
 Identities = 161/173 (93%)
 Strand = Plus / Plus

                                                                       
Query: 288 gagaagaagccgccggcggtgtccgacctcggcgcctgggggatgaacgtcgtcagctcc 347
           ||||||||||||||||||||||||||| |||| || |||| |||||||||||||||||||
Sbjct: 407 gagaagaagccgccggcggtgtccgacgtcggggcgtgggcgatgaacgtcgtcagctcc 466

                                                                       
Query: 348 gtcggcctcatcatggccaacaagcagctcatgtcctccgccggctacgccttctccttc 407
           |||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 467 gtcggcatcatcatggcaaacaagcagctcatgtcctcctccggctacgccttctccttc 526

                                                                
Query: 408 gccaccacgttgaccggcttccacttcaccgtcacggcgctcgtcgggtggat 460
           ||||| ||| ||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 527 gccacgacgctgaccggattccacttcacggtcacggcgctcgtcggatggat 579



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 145 gcggcccctcccgcgtgaggcaccgagg 172
           ||||| ||||||||||||||||||||||
Sbjct: 231 gcggctcctcccgcgtgaggcaccgagg 258



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 88  tgcctaggcggcaacgcctc 107
           ||||||||||||||||||||
Sbjct: 194 tgcctaggcggcaacgcctc 213
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>ref|XM_506427.2| PREDICTED Oryza sativa (japonica cultivar-group), P0453G03.28 mRNA
          Length = 1476

 Score =  248 bits (125), Expect = 1e-62
 Identities = 161/173 (93%)
 Strand = Plus / Plus

                                                                       
Query: 288 gagaagaagccgccggcggtgtccgacctcggcgcctgggggatgaacgtcgtcagctcc 347
           ||||||||||||||||||||||||||| |||| || |||| |||||||||||||||||||
Sbjct: 156 gagaagaagccgccggcggtgtccgacgtcggggcgtgggcgatgaacgtcgtcagctcc 215

                                                                       
Query: 348 gtcggcctcatcatggccaacaagcagctcatgtcctccgccggctacgccttctccttc 407
           |||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 216 gtcggcatcatcatggcaaacaagcagctcatgtcctcctccggctacgccttctccttc 275

                                                                
Query: 408 gccaccacgttgaccggcttccacttcaccgtcacggcgctcgtcgggtggat 460
           ||||| ||| ||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 276 gccacgacgctgaccggattccacttcacggtcacggcgctcgtcggatggat 328
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>dbj|AK102987.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033116C12, full
           insert sequence
          Length = 1713

 Score =  248 bits (125), Expect = 1e-62
 Identities = 161/173 (93%)
 Strand = Plus / Plus

                                                                       
Query: 288 gagaagaagccgccggcggtgtccgacctcggcgcctgggggatgaacgtcgtcagctcc 347
           ||||||||||||||||||||||||||| |||| || |||| |||||||||||||||||||
Sbjct: 408 gagaagaagccgccggcggtgtccgacgtcggggcgtgggcgatgaacgtcgtcagctcc 467

                                                                       
Query: 348 gtcggcctcatcatggccaacaagcagctcatgtcctccgccggctacgccttctccttc 407
           |||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 468 gtcggcatcatcatggcaaacaagcagctcatgtcctcctccggctacgccttctccttc 527

                                                                
Query: 408 gccaccacgttgaccggcttccacttcaccgtcacggcgctcgtcgggtggat 460
           ||||| ||| ||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 528 gccacgacgctgaccggattccacttcacggtcacggcgctcgtcggatggat 580



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 145 gcggcccctcccgcgtgaggcaccgagg 172
           ||||| ||||||||||||||||||||||
Sbjct: 232 gcggctcctcccgcgtgaggcaccgagg 259



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 88  tgcctaggcggcaacgcctc 107
           ||||||||||||||||||||
Sbjct: 195 tgcctaggcggcaacgcctc 214
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>dbj|AK064035.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-C07, full
           insert sequence
          Length = 1476

 Score =  248 bits (125), Expect = 1e-62
 Identities = 161/173 (93%)
 Strand = Plus / Plus

                                                                       
Query: 288 gagaagaagccgccggcggtgtccgacctcggcgcctgggggatgaacgtcgtcagctcc 347
           ||||||||||||||||||||||||||| |||| || |||| |||||||||||||||||||
Sbjct: 156 gagaagaagccgccggcggtgtccgacgtcggggcgtgggcgatgaacgtcgtcagctcc 215

                                                                       
Query: 348 gtcggcctcatcatggccaacaagcagctcatgtcctccgccggctacgccttctccttc 407
           |||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 216 gtcggcatcatcatggcaaacaagcagctcatgtcctcctccggctacgccttctccttc 275

                                                                
Query: 408 gccaccacgttgaccggcttccacttcaccgtcacggcgctcgtcgggtggat 460
           ||||| ||| ||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 276 gccacgacgctgaccggattccacttcacggtcacggcgctcgtcggatggat 328
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>gb|AY105059.1| Zea mays PCO143661 mRNA sequence
          Length = 1327

 Score =  248 bits (125), Expect = 1e-62
 Identities = 161/173 (93%)
 Strand = Plus / Plus

                                                                       
Query: 288 gagaagaagccgccggcggtgtccgacctcggcgcctgggggatgaacgtcgtcagctcc 347
           ||||||||| ||||||||||||||||| | ||||| |||| |||||||||||||||||||
Sbjct: 453 gagaagaaggcgccggcggtgtccgacgtgggcgcgtgggcgatgaacgtcgtcagctcc 512

                                                                       
Query: 348 gtcggcctcatcatggccaacaagcagctcatgtcctccgccggctacgccttctccttc 407
           ||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 513 gtcagcctcatcatggccaacaagcagctcatgtcctcctccggctacgccttcgccttc 572

                                                                
Query: 408 gccaccacgttgaccggcttccacttcaccgtcacggcgctcgtcgggtggat 460
           ||||||||| | ||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 573 gccaccacgctcaccgggttccacttcacggtcacggcgctcgtcgggtggat 625
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>gb|AY596549.1| Saccharum officinarum clone SCBFLR1083F06, complete sequence
          Length = 1270

 Score =  240 bits (121), Expect = 3e-60
 Identities = 160/173 (92%)
 Strand = Plus / Minus

                                                                        
Query: 288  gagaagaagccgccggcggtgtccgacctcggcgcctgggggatgaacgtcgtcagctcc 347
            ||||||||| ||||||||||||||||  | ||||| |||| |||||||||||||||||||
Sbjct: 1031 gagaagaagacgccggcggtgtccgatgtgggcgcgtgggcgatgaacgtcgtcagctcc 972

                                                                        
Query: 348  gtcggcctcatcatggccaacaagcagctcatgtcctccgccggctacgccttctccttc 407
            ||| | ||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 971  gtcagtctcatcatggccaacaagcagctcatgtcctcctccggctacgccttcgccttc 912

                                                                 
Query: 408  gccaccacgttgaccggcttccacttcaccgtcacggcgctcgtcgggtggat 460
            ||||||||| ||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 911  gccaccacgctgaccgggttccacttcacggtcacggcgctcgtcgggtggat 859



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 145  gcggcccctcccgcgtgaggca 166
            ||||||||||||||||||||||
Sbjct: 1177 gcggcccctcccgcgtgaggca 1156
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>ref|XM_478881.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1122

 Score =  184 bits (93), Expect = 2e-43
 Identities = 114/121 (94%)
 Strand = Plus / Plus

                                                                       
Query: 288 gagaagaagccgccggcggtgtccgacctcggcgcctgggggatgaacgtcgtcagctcc 347
           ||||||||||||||||||||||||||| |||| || |||| |||||||||||||||||||
Sbjct: 10  gagaagaagccgccggcggtgtccgacgtcggggcgtgggcgatgaacgtcgtcagctcc 69

                                                                       
Query: 348 gtcggcctcatcatggccaacaagcagctcatgtcctccgccggctacgccttctccttc 407
           |||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 70  gtcggcatcatcatggcaaacaagcagctcatgtcctcctccggctacgccttctccttc 129

            
Query: 408 g 408
           |
Sbjct: 130 g 130



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                
Query: 408 gccaccacgttgaccggcttccacttcaccgtcacggcgctcgtcgggtggat 460
           ||||| ||| ||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 214 gccacgacgctgaccggattccacttcacggtcacggcgctcgtcggatggat 266
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  184 bits (93), Expect = 2e-43
 Identities = 114/121 (94%)
 Strand = Plus / Minus

                                                                            
Query: 288      gagaagaagccgccggcggtgtccgacctcggcgcctgggggatgaacgtcgtcagctcc 347
                ||||||||||||||||||||||||||| |||| || |||| |||||||||||||||||||
Sbjct: 23461583 gagaagaagccgccggcggtgtccgacgtcggggcgtgggcgatgaacgtcgtcagctcc 23461524

                                                                            
Query: 348      gtcggcctcatcatggccaacaagcagctcatgtcctccgccggctacgccttctccttc 407
                |||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 23461523 gtcggcatcatcatggcaaacaagcagctcatgtcctcctccggctacgccttctccttc 23461464

                 
Query: 408      g 408
                |
Sbjct: 23461463 g 23461463



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                     
Query: 408      gccaccacgttgaccggcttccacttcaccgtcacggcgctcgtcgggtggat 460
                ||||| ||| ||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 23461315 gccacgacgctgaccggattccacttcacggtcacggcgctcgtcggatggat 23461263



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 145      gcggcccctcccgcgtgaggcaccgagg 172
                ||||| ||||||||||||||||||||||
Sbjct: 23461759 gcggctcctcccgcgtgaggcaccgagg 23461732



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 189      gcgcagcgcagcgcagccgaggcg 212
                ||||||||||||||||| ||||||
Sbjct: 23862271 gcgcagcgcagcgcagcggaggcg 23862248



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 88       tgcctaggcggcaacgcctc 107
                ||||||||||||||||||||
Sbjct: 23461796 tgcctaggcggcaacgcctc 23461777
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>dbj|AP004185.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1301_C12
          Length = 128396

 Score =  184 bits (93), Expect = 2e-43
 Identities = 114/121 (94%)
 Strand = Plus / Minus

                                                                         
Query: 288   gagaagaagccgccggcggtgtccgacctcggcgcctgggggatgaacgtcgtcagctcc 347
             ||||||||||||||||||||||||||| |||| || |||| |||||||||||||||||||
Sbjct: 21976 gagaagaagccgccggcggtgtccgacgtcggggcgtgggcgatgaacgtcgtcagctcc 21917

                                                                         
Query: 348   gtcggcctcatcatggccaacaagcagctcatgtcctccgccggctacgccttctccttc 407
             |||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 21916 gtcggcatcatcatggcaaacaagcagctcatgtcctcctccggctacgccttctccttc 21857

              
Query: 408   g 408
             |
Sbjct: 21856 g 21856



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                  
Query: 408   gccaccacgttgaccggcttccacttcaccgtcacggcgctcgtcgggtggat 460
             ||||| ||| ||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 21708 gccacgacgctgaccggattccacttcacggtcacggcgctcgtcggatggat 21656



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 145   gcggcccctcccgcgtgaggcaccgagg 172
             ||||| ||||||||||||||||||||||
Sbjct: 22152 gcggctcctcccgcgtgaggcaccgagg 22125



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    tgcctaggcggcaacgcctc 107
             ||||||||||||||||||||
Sbjct: 22189 tgcctaggcggcaacgcctc 22170
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>dbj|AP004276.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0453G03
          Length = 144480

 Score =  184 bits (93), Expect = 2e-43
 Identities = 114/121 (94%)
 Strand = Plus / Minus

                                                                         
Query: 288   gagaagaagccgccggcggtgtccgacctcggcgcctgggggatgaacgtcgtcagctcc 347
             ||||||||||||||||||||||||||| |||| || |||| |||||||||||||||||||
Sbjct: 81480 gagaagaagccgccggcggtgtccgacgtcggggcgtgggcgatgaacgtcgtcagctcc 81421

                                                                         
Query: 348   gtcggcctcatcatggccaacaagcagctcatgtcctccgccggctacgccttctccttc 407
             |||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 81420 gtcggcatcatcatggcaaacaagcagctcatgtcctcctccggctacgccttctccttc 81361

              
Query: 408   g 408
             |
Sbjct: 81360 g 81360



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                  
Query: 408   gccaccacgttgaccggcttccacttcaccgtcacggcgctcgtcgggtggat 460
             ||||| ||| ||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 81212 gccacgacgctgaccggattccacttcacggtcacggcgctcgtcggatggat 81160



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 145   gcggcccctcccgcgtgaggcaccgagg 172
             ||||| ||||||||||||||||||||||
Sbjct: 81656 gcggctcctcccgcgtgaggcaccgagg 81629



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    tgcctaggcggcaacgcctc 107
             ||||||||||||||||||||
Sbjct: 81693 tgcctaggcggcaacgcctc 81674
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>gb|AC150512.3| Bos taurus  BAC CH240-319N17 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 167026

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 225   cccctccctccaccaccgtccac 247
             |||||||||||||||||||||||
Sbjct: 24982 cccctccctccaccaccgtccac 24960
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>emb|AJ006589.2|BPH6589 Bacteriophage phi-C31 complete genome
          Length = 41491

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 334   acgtcgtcagctccgtcggcct 355
             ||||||||||||||||||||||
Sbjct: 25276 acgtcgtcagctccgtcggcct 25297
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>emb|X76288.1|BPHIC31E Bacteriophage phi-C31 early region, virus genome
          Length = 13445

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 334  acgtcgtcagctccgtcggcct 355
            ||||||||||||||||||||||
Sbjct: 6767 acgtcgtcagctccgtcggcct 6788
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>gb|AC137745.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0041J18, complete sequence
          Length = 129523

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 353   cctcatcatggccaacaagca 373
             |||||||||||||||||||||
Sbjct: 49851 cctcatcatggccaacaagca 49831
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>ref|XM_502339.1| Yarrowia lipolytica CLIB122, YALI0D02761g predicted mRNA
          Length = 1902

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 346 ccgtcggcctcatcatggccaacaa 370
           ||||||||||||| |||||||||||
Sbjct: 455 ccgtcggcctcatgatggccaacaa 479
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>emb|AL035703.21|HS61A9 Human DNA sequence from clone RP1-61A9 on chromosome 1p35.2-36.13
             Contains a novel gene (KIAA0478) and the EPHA8 gene for
             ephrin receptor EphA8 precursor, complete sequence
          Length = 160705

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 104   cctcttctcccctcgcctcaccttt 128
             |||||||||||||| ||||||||||
Sbjct: 10030 cctcttctcccctctcctcaccttt 10006
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>emb|CR602359.1| full-length cDNA clone CS0DD005YH10 of Neuroblastoma Cot
           50-normalized of Homo sapiens (human)
          Length = 1085

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 188 agcgcagcgcagcgcagccgaggcg 212
           |||||||||||||||||| ||||||
Sbjct: 70  agcgcagcgcagcgcagcggaggcg 46
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 348    gtcggcctcatcatggccaac 368
              |||||||||||||||||||||
Sbjct: 560107 gtcggcctcatcatggccaac 560127
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 219     acccctcccctccctccaccaccgtccac 247
               |||||||||| ||| ||||||||||||||
Sbjct: 1684490 acccctccccgcccaccaccaccgtccac 1684462
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>emb|AL954212.1| Pan troglodytes chromosome 22 clone RP43-043L10 map 22q22.11, complete
              sequence
          Length = 192328

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 217    gaacccctcccctccctccaccacc 241
              |||||||||||||||| ||||||||
Sbjct: 117732 gaacccctcccctcccaccaccacc 117708
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>dbj|AK068468.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156J19, full
            insert sequence
          Length = 3232

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 353  cctcatcatggccaacaagca 373
            |||||||||||||||||||||
Sbjct: 2449 cctcatcatggccaacaagca 2429
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>gb|U80601.1|HSU80601 Human novel unknown gene, partial 3'UTR, and VEGF-related factor
           (VRF) gene, promoter region
          Length = 632

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 188 agcgcagcgcagcgcagccgaggcg 212
           |||||||||||||||||| ||||||
Sbjct: 463 agcgcagcgcagcgcagcggaggcg 439
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>dbj|AP001453.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-783K16, complete
            sequence
          Length = 166356

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 188  agcgcagcgcagcgcagccgaggcg 212
            |||||||||||||||||| ||||||
Sbjct: 6849 agcgcagcgcagcgcagcggaggcg 6825
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 435     accgtcacggcgctcgtcggg 455
               |||||||||||||||||||||
Sbjct: 2972433 accgtcacggcgctcgtcggg 2972453
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 353      cctcatcatggccaacaagca 373
                |||||||||||||||||||||
Sbjct: 16613086 cctcatcatggccaacaagca 16613066
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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 346    ccgtcggcctcatcatggccaacaa 370
              ||||||||||||| |||||||||||
Sbjct: 349195 ccgtcggcctcatgatggccaacaa 349219
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>ref|XM_523402.1| PREDICTED: Pan troglodytes similar to hypothetical protein FLJ12331
            (LOC468010), mRNA
          Length = 2400

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 265  ggaggaggggcatggagccg 284
            ||||||||||||||||||||
Sbjct: 1675 ggaggaggggcatggagccg 1694
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>ref|XM_480760.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1924

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 107 cttctcccctcgcctcacct 126
           ||||||||||||||||||||
Sbjct: 59  cttctcccctcgcctcacct 78
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>ref|XM_478929.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 639

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 189 gcgcagcgcagcgcagccgaggcg 212
           ||||||||||||||||| ||||||
Sbjct: 555 gcgcagcgcagcgcagcggaggcg 578
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>gb|AY019856.1| Oryza sativa microsatellite MRG2181 containing (CT)X12, closest to
           marker R1813, genomic sequence
          Length = 224

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 107 cttctcccctcgcctcacct 126
           ||||||||||||||||||||
Sbjct: 156 cttctcccctcgcctcacct 175
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>gb|AC096689.5| Oryza sativa chromosome 3 BAC OSJNBa0027J18 genomic sequence, complete
             sequence
          Length = 112892

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 289   agaagaagccgccggcggtg 308
             ||||||||||||||||||||
Sbjct: 32727 agaagaagccgccggcggtg 32746
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>ref|NM_018584.4| Homo sapiens calcium/calmodulin-dependent protein kinase II
           inhibitor 1 (CAMK2N1), mRNA
          Length = 860

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 agcgcagcgcagcgcagccg 207
           ||||||||||||||||||||
Sbjct: 181 agcgcagcgcagcgcagccg 200
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>gb|AC146187.2| Pan troglodytes BAC clone RP43-25A10 from 7, complete sequence
          Length = 156796

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   acccctcccctccctccacc 238
             ||||||||||||||||||||
Sbjct: 53069 acccctcccctccctccacc 53088
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 289      agaagaagccgccggcggtg 308
                ||||||||||||||||||||
Sbjct: 29816734 agaagaagccgccggcggtg 29816715
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>ref|XM_977769.1| PREDICTED: Mus musculus hypothetical protein LOC674876 (LOC674876),
           mRNA
          Length = 354

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 agcgcagcgcagcgcagccg 207
           ||||||||||||||||||||
Sbjct: 180 agcgcagcgcagcgcagccg 199
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>gb|AC133503.4| Mus musculus BAC clone RP24-301O19 from chromosome 19, complete sequence
          Length = 161150

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 359    catggccaacaagcagctca 378
              ||||||||||||||||||||
Sbjct: 143729 catggccaacaagcagctca 143710
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>gb|AC117225.3| Mus musculus BAC clone RP23-366F3 from 19, complete sequence
          Length = 149854

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 359   catggccaacaagcagctca 378
             ||||||||||||||||||||
Sbjct: 76586 catggccaacaagcagctca 76567
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>emb|AL391357.20| Human DNA sequence from clone RP11-401M16 on chromosome 1 Contains
            the gene for calcium/calmodulin-dependent protein kinase
            II (CaMKIINalpha), the gene for a novel protein
            (FLJ12875), a  ribosomal protein S4 X-linked (RPS4X)
            pseudogene, the CDA gene for cytidine deaminase, the
            PINK1 gene for PTEN induced putative kinase 1, a novel
            gene (FLJ00387), the DDOST gene for
            dolichyl-diphosphooligosaccharide-protein
            glycosyltransferase and the 3' end of the KIF17 gene for
            kinesin family member 17, complete sequence
          Length = 195076

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 188  agcgcagcgcagcgcagccg 207
            ||||||||||||||||||||
Sbjct: 7406 agcgcagcgcagcgcagccg 7387
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>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29
          Length = 296500

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    cgggcggcccctcccgcgtg 161
              ||||||||||||||||||||
Sbjct: 118554 cgggcggcccctcccgcgtg 118573
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>gb|AY204901.1| Homo sapiens calcium/calmodulin-dependent protein kinase II
           inhibitor alpha (CaMKIINalpha) mRNA, complete cds
          Length = 860

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 agcgcagcgcagcgcagccg 207
           ||||||||||||||||||||
Sbjct: 181 agcgcagcgcagcgcagccg 200
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>gb|AC025571.20| Homo sapiens 3 BAC RP11-515C21 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 159902

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 219    acccctcccctccctccacc 238
              ||||||||||||||||||||
Sbjct: 100700 acccctcccctccctccacc 100719
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>gb|AC009027.10| Homo sapiens chromosome 16 clone RP11-123C5, complete sequence
          Length = 178256

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   ggaggaggggcatggagccg 284
             ||||||||||||||||||||
Sbjct: 33897 ggaggaggggcatggagccg 33878
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>gb|AF342812.1|AF342812 Sus scrofa mannose-6-phosphate/insulin-like growth factor II
           receptor (m6p/igf2r) mRNA, 3'UTR
          Length = 959

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 136 agagagcgggcggcccctcc 155
           ||||||||||||||||||||
Sbjct: 244 agagagcgggcggcccctcc 225
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>gb|AC009131.6|AC009131 Homo sapiens chromosome 16 clone RP11-502K10, complete sequence
          Length = 180835

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 265    ggaggaggggcatggagccg 284
              ||||||||||||||||||||
Sbjct: 118437 ggaggaggggcatggagccg 118418
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 107     cttctcccctcgcctcacct 126
               ||||||||||||||||||||
Sbjct: 7547519 cttctcccctcgcctcacct 7547538
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 289      agaagaagccgccggcggtg 308
                ||||||||||||||||||||
Sbjct: 29908156 agaagaagccgccggcggtg 29908137
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>gb|AC021200.7| Homo sapiens BAC clone RP11-62B4 from 4, complete sequence
          Length = 154690

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    ccctcccctccctccaccac 240
              ||||||||||||||||||||
Sbjct: 140421 ccctcccctccctccaccac 140440
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>gb|AC154224.1| Mus musculus BAC clone RP24-141J15 from chromosome 13, complete
             sequence
          Length = 146998

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   agcgcagcgcagcgcagccg 207
             ||||||||||||||||||||
Sbjct: 45400 agcgcagcgcagcgcagccg 45381
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>dbj|AP005149.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0005G07
          Length = 142850

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 189   gcgcagcgcagcgcagccgaggcg 212
             ||||||||||||||||| ||||||
Sbjct: 17198 gcgcagcgcagcgcagcggaggcg 17175
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 282     ccggccgagaagaagccgccggcg 305
               ||||||| ||||||||||||||||
Sbjct: 5721052 ccggccgcgaagaagccgccggcg 5721029
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>dbj|AP003799.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1006_H01
          Length = 113769

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   cttctcccctcgcctcacct 126
             ||||||||||||||||||||
Sbjct: 74600 cttctcccctcgcctcacct 74619
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>dbj|AP003985.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1047_C01
          Length = 97427

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 189   gcgcagcgcagcgcagccgaggcg 212
             ||||||||||||||||| ||||||
Sbjct: 50771 gcgcagcgcagcgcagcggaggcg 50748
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>dbj|AK121704.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033074L20, full
           insert sequence
          Length = 1930

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 107 cttctcccctcgcctcacct 126
           ||||||||||||||||||||
Sbjct: 58  cttctcccctcgcctcacct 77
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>dbj|AK111800.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112L21, full
           insert sequence
          Length = 1974

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 107 cttctcccctcgcctcacct 126
           ||||||||||||||||||||
Sbjct: 96  cttctcccctcgcctcacct 115
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>emb|AJ324422.1|HSA324422 Homo sapiens genomic sequence surrounding NotI site, clone NR1-AB5C
          Length = 616

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 188 agcgcagcgcagcgcagccg 207
           ||||||||||||||||||||
Sbjct: 353 agcgcagcgcagcgcagccg 334
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>dbj|AK099003.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013109F16, full
           insert sequence
          Length = 1923

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 107 cttctcccctcgcctcacct 126
           ||||||||||||||||||||
Sbjct: 58  cttctcccctcgcctcacct 77
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>gb|AC005746.1|AC005746 Homo sapiens chromosome 17, clone hRPK.332_H_18, complete sequence
          Length = 189356

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   cccctcccctccctccacca 239
             ||||||||||||||||||||
Sbjct: 82577 cccctcccctccctccacca 82558
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>emb|AL672106.9| Mouse DNA sequence from clone RP23-372E6 on chromosome X, complete
             sequence
          Length = 121764

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   cctcttctcccctcgcctca 123
             ||||||||||||||||||||
Sbjct: 36696 cctcttctcccctcgcctca 36677
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>emb|AL772194.6| Mouse DNA sequence from clone RP23-331M18 on chromosome 4, complete
             sequence
          Length = 176496

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   gcctcacctttataaccgag 137
             ||||||||||||||||||||
Sbjct: 31767 gcctcacctttataaccgag 31786


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,042,684
Number of Sequences: 3902068
Number of extensions: 3042684
Number of successful extensions: 70745
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70164
Number of HSP's gapped (non-prelim): 578
length of query: 462
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 440
effective length of database: 17,147,199,772
effective search space: 7544767899680
effective search space used: 7544767899680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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