ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast56c12 |
|---|---|
| Clone Library Name | barley_pub |
>Y658_PYRAB (Q9V0Y1) Hypothetical protein PYRAB06580| Length = 268 Score = 38.9 bits (89), Expect = 0.006 Identities = 26/70 (37%), Positives = 39/70 (55%) Frame = +3 Query: 168 VEQANVAVVEKWGRFLRLAEPGLHFFNPCAGELVAGTLSTRVQSLDVRVETKTKDNVFVQ 347 V++ AV+ + GR + PGL F P + V L T+V + V+ ET TKDNV V+ Sbjct: 28 VKEYERAVIFRLGRVVGARGPGLFFIIPIFEKAVIVDLRTQVLDVPVQ-ETITKDNVPVR 86 Query: 348 LICTIQYRVV 377 + + +RVV Sbjct: 87 VNAVVYFRVV 96
>Y1511_PYRHO (O59180) Hypothetical protein PH1511| Length = 266 Score = 38.9 bits (89), Expect = 0.006 Identities = 26/70 (37%), Positives = 39/70 (55%) Frame = +3 Query: 168 VEQANVAVVEKWGRFLRLAEPGLHFFNPCAGELVAGTLSTRVQSLDVRVETKTKDNVFVQ 347 V++ AV+ + GR + PGL F P + V L T+V + V+ ET TKDNV V+ Sbjct: 28 VKEYERAVIFRLGRVVGARGPGLFFIIPIFEKAVIVDLRTQVLDVPVQ-ETITKDNVPVR 86 Query: 348 LICTIQYRVV 377 + + +RVV Sbjct: 87 VNAVVYFRVV 96
>HFLK_BUCBP (Q89A39) Protein hflK| Length = 417 Score = 37.4 bits (85), Expect = 0.018 Identities = 22/70 (31%), Positives = 39/70 (55%) Frame = +3 Query: 168 VEQANVAVVEKWGRFLRLAEPGLHFFNPCAGELVAGTLSTRVQSLDVRVETKTKDNVFVQ 347 ++++ VV +G+F LA PGLH+ +++ +ST V+ ++ T FVQ Sbjct: 91 IQESEYGVVTCFGKFSYLANPGLHWKPILIQKVIPIDVST-VREINTSGTILTYSEHFVQ 149 Query: 348 LICTIQYRVV 377 + T+QYR+V Sbjct: 150 VNMTVQYRIV 159
>Y1420_ARCFU (O28852) Hypothetical protein AF1420| Length = 249 Score = 35.0 bits (79), Expect = 0.088 Identities = 23/70 (32%), Positives = 34/70 (48%) Frame = +3 Query: 168 VEQANVAVVEKWGRFLRLAEPGLHFFNPCAGELVAGTLSTRVQSLDVRVETKTKDNVFVQ 347 V++ V+ + GR + PGL F P +V L T + + E TKDNV V+ Sbjct: 23 VKEYERGVIFRLGRLVGARGPGLFFIIPILENMVVVDLRTVTYDVPSQ-EVVTKDNVTVK 81 Query: 348 LICTIQYRVV 377 + + YRVV Sbjct: 82 VNAVVYYRVV 91
>YR614_MIMIV (Q5UP73) Hypothetical band 7 family protein R614| Length = 303 Score = 34.7 bits (78), Expect = 0.11 Identities = 19/74 (25%), Positives = 38/74 (51%) Frame = +3 Query: 189 VVEKWGRFLRLAEPGLHFFNPCAGELVAGTLSTRVQSLDVRVETKTKDNVFVQLICTIQY 368 VV+++GR R G+H+ NP + + +V LD + + T D + +++ + Y Sbjct: 79 VVQEFGRVKREINDGMHYVNPVTESISQVDMRIKVIDLD-KKDVMTSDKLSIKIDSVVYY 137 Query: 369 RVVKENADDAFYEL 410 +V N DA +++ Sbjct: 138 QVT--NIHDALFKI 149
>Y827_METJA (Q58237) Hypothetical protein MJ0827| Length = 199 Score = 32.7 bits (73), Expect = 0.44 Identities = 24/88 (27%), Positives = 42/88 (47%) Frame = +3 Query: 168 VEQANVAVVEKWGRFLRLAEPGLHFFNPCAGELVAGTLSTRVQSLDVRVETKTKDNVFVQ 347 V Q ++ + GR + +PG++ P V + TRV + + E TKDN V+ Sbjct: 28 VNQYEGGLIFRLGRVIGKLKPGINIIIPFLDVPVKVDMRTRVTDIPPQ-EMITKDNAVVK 86 Query: 348 LICTIQYRVVKENADDAFYELQKSPTAI 431 + + YRV+ + + A E++ AI Sbjct: 87 VDAVVYYRVI--DVEKAILEVEDYEYAI 112
>HFLK_ECOLI (P0ABC7) Protein hflK| Length = 419 Score = 31.2 bits (69), Expect = 1.3 Identities = 21/69 (30%), Positives = 34/69 (49%) Frame = +3 Query: 168 VEQANVAVVEKWGRFLRLAEPGLHFFNPCAGELVAGTLSTRVQSLDVRVETKTKDNVFVQ 347 +++A VV ++G+F L EPGL+ + P + V V+ L T D V+ Sbjct: 100 IKEAERGVVTRFGKFSHLVEPGLN-WKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVR 158 Query: 348 LICTIQYRV 374 + +QYRV Sbjct: 159 VEMNVQYRV 167
>HFLK_ECO57 (P0ABC8) Protein hflK| Length = 419 Score = 31.2 bits (69), Expect = 1.3 Identities = 21/69 (30%), Positives = 34/69 (49%) Frame = +3 Query: 168 VEQANVAVVEKWGRFLRLAEPGLHFFNPCAGELVAGTLSTRVQSLDVRVETKTKDNVFVQ 347 +++A VV ++G+F L EPGL+ + P + V V+ L T D V+ Sbjct: 100 IKEAERGVVTRFGKFSHLVEPGLN-WKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVR 158 Query: 348 LICTIQYRV 374 + +QYRV Sbjct: 159 VEMNVQYRV 167
>HFLK_BUCAP (Q8K914) Protein hflK| Length = 411 Score = 31.2 bits (69), Expect = 1.3 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 4/81 (4%) Frame = +3 Query: 144 AFFLFCGC----VEQANVAVVEKWGRFLRLAEPGLHFFNPCAGELVAGTLSTRVQSLDVR 311 +FF++C +++A VV +G+F L PGL++ E+ A + T V+ L Sbjct: 79 SFFVWCFSGFYTIKEAERGVVTTFGKFSHLVAPGLNWRPVFINEVKAVNVET-VRELATS 137 Query: 312 VETKTKDNVFVQLICTIQYRV 374 T D V++ +QY++ Sbjct: 138 GVMLTSDENVVRVEMNVQYKI 158
>PRLC3_MOUSE (Q9DAS4) Placental prolactin-like protein C3 precursor (PRL-like| protein C3) (PLP-C3) (Prolactin-like protein C-gamma) (PLP C-gamma) Length = 241 Score = 31.2 bits (69), Expect = 1.3 Identities = 16/57 (28%), Positives = 27/57 (47%) Frame = -3 Query: 211 KRPHFSTTATLACSTHPQKRKKALTIPACSRRTAGWIGPPVRSMDGRFPATDSARAV 41 ++PHFS L ++ +KA +IPAC +G P + + D ++ R V Sbjct: 6 RQPHFSDALLLLLLSNLLLWEKASSIPACMAEKSGCWNPRMETFDSAIRKAETLRTV 62
>STML2_HUMAN (Q9UJZ1) Stomatin-like protein 2 (SLP-2) (EPB72-like 2)| Length = 356 Score = 31.2 bits (69), Expect = 1.3 Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 7/96 (7%) Frame = +3 Query: 111 AVRREQAGMV-SAFFLFCGCVEQANVAVVEKWGRFLRLAEPGLHFFNPCAGELVAGTLST 287 A RR +G+ + LF V Q VVE+ GRF R+ EPGL+ P + Sbjct: 24 APRRASSGLPRNTVVLF---VPQQEAWVVERMGRFHRILEPGLNILIPVLDRI------R 74 Query: 288 RVQSLDVRV------ETKTKDNVFVQLICTIQYRVV 377 VQSL V T DNV +Q+ + R++ Sbjct: 75 YVQSLKEIVINVPEQSAVTLDNVTLQIDGVLYLRIM 110
>Y692_METTH (O26788) Hypothetical protein MTH692| Length = 318 Score = 31.2 bits (69), Expect = 1.3 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Frame = +3 Query: 189 VVEKWGRFLRLAEPGLHFFNPCAGELVAGTLSTRVQSLDVRV-ETKTKDNVFVQLICTIQ 365 VVE+ G++ R E GL P + + R Q +DV E TKDN V + C I Sbjct: 29 VVERLGKYQRTVESGLVVIIPFIEAIKK--VDMREQVVDVPPQEVITKDNTVVVVDCVIF 86 Query: 366 YRVV 377 Y VV Sbjct: 87 YEVV 90
>HFLC_VIBCH (Q9KV08) Protein hflC (EC 3.4.-.-)| Length = 326 Score = 30.8 bits (68), Expect = 1.7 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 7/69 (10%) Frame = +3 Query: 135 MVSAFFLFCGCVEQANVAVVEKWGRFL-------RLAEPGLHFFNPCAGELVAGTLSTRV 293 +++A + + + +V ++GR L R+ EPGLHF P L RV Sbjct: 12 IIAALLMSMFVIPEGERGIVIRFGRVLKDNNDLARIYEPGLHFKMP---------LFDRV 62 Query: 294 QSLDVRVET 320 ++LD R++T Sbjct: 63 KTLDARIQT 71
>YBBK_SHIFL (P0AA56) Hypothetical protein ybbK| Length = 305 Score = 30.8 bits (68), Expect = 1.7 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 3/91 (3%) Frame = +3 Query: 168 VEQANVAVVEKWGRFLRLAEPGLHFFNPCAGELVAGTLSTRVQSLDV---RVETKTKDNV 338 V Q VE++GR+ + +PGL P + + ++ Q LD+ V +K NV Sbjct: 23 VPQGYQWTVERFGRYTKTLQPGLSLVVPFM-DRIGRKINMMEQVLDIPSQEVISKDNANV 81 Query: 339 FVQLICTIQYRVVKENADDAFYELQKSPTAI 431 + +C IQ +A A YE+ AI Sbjct: 82 TIDAVCFIQV----IDAPRAAYEVSNLELAI 108
>YBBK_ECOLI (P0AA53) Hypothetical protein ybbK| Length = 305 Score = 30.8 bits (68), Expect = 1.7 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 3/91 (3%) Frame = +3 Query: 168 VEQANVAVVEKWGRFLRLAEPGLHFFNPCAGELVAGTLSTRVQSLDV---RVETKTKDNV 338 V Q VE++GR+ + +PGL P + + ++ Q LD+ V +K NV Sbjct: 23 VPQGYQWTVERFGRYTKTLQPGLSLVVPFM-DRIGRKINMMEQVLDIPSQEVISKDNANV 81 Query: 339 FVQLICTIQYRVVKENADDAFYELQKSPTAI 431 + +C IQ +A A YE+ AI Sbjct: 82 TIDAVCFIQV----IDAPRAAYEVSNLELAI 108
>YBBK_ECOL6 (P0AA54) Hypothetical protein ybbK| Length = 305 Score = 30.8 bits (68), Expect = 1.7 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 3/91 (3%) Frame = +3 Query: 168 VEQANVAVVEKWGRFLRLAEPGLHFFNPCAGELVAGTLSTRVQSLDV---RVETKTKDNV 338 V Q VE++GR+ + +PGL P + + ++ Q LD+ V +K NV Sbjct: 23 VPQGYQWTVERFGRYTKTLQPGLSLVVPFM-DRIGRKINMMEQVLDIPSQEVISKDNANV 81 Query: 339 FVQLICTIQYRVVKENADDAFYELQKSPTAI 431 + +C IQ +A A YE+ AI Sbjct: 82 TIDAVCFIQV----IDAPRAAYEVSNLELAI 108
>YBBK_ECO57 (P0AA55) Hypothetical protein ybbK| Length = 305 Score = 30.8 bits (68), Expect = 1.7 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 3/91 (3%) Frame = +3 Query: 168 VEQANVAVVEKWGRFLRLAEPGLHFFNPCAGELVAGTLSTRVQSLDV---RVETKTKDNV 338 V Q VE++GR+ + +PGL P + + ++ Q LD+ V +K NV Sbjct: 23 VPQGYQWTVERFGRYTKTLQPGLSLVVPFM-DRIGRKINMMEQVLDIPSQEVISKDNANV 81 Query: 339 FVQLICTIQYRVVKENADDAFYELQKSPTAI 431 + +C IQ +A A YE+ AI Sbjct: 82 TIDAVCFIQV----IDAPRAAYEVSNLELAI 108
>STML2_MOUSE (Q99JB2) Stomatin-like protein 2 (SLP-2)| Length = 353 Score = 30.4 bits (67), Expect = 2.2 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 6/76 (7%) Frame = +3 Query: 168 VEQANVAVVEKWGRFLRLAEPGLHFFNPCAGELVAGTLSTRVQSLDVRV------ETKTK 329 V Q VVE+ GRF R+ EPGL+ P + VQSL V T Sbjct: 41 VPQQEAWVVERMGRFHRILEPGLNVLIPVLDRI------RYVQSLKEIVINVPEQSAVTL 94 Query: 330 DNVFVQLICTIQYRVV 377 DNV +Q+ + R++ Sbjct: 95 DNVTLQIDGVLYLRIM 110
>PODO_RAT (Q8K4G9) Podocin| Length = 383 Score = 30.4 bits (67), Expect = 2.2 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 3/95 (3%) Frame = +3 Query: 168 VEQANVAVVEKWGRFL--RLAEPGLHFFNPCAGELVAGTLSTRVQSLDVRV-ETKTKDNV 338 V++ ++ + G L R PGL FF PC + R+Q+L++ E TKD Sbjct: 128 VQEYERVIIFRLGHLLPGRAKGPGLFFFLPCLD--TYHKVDLRLQTLEIPFHEVVTKDMF 185 Query: 339 FVQLICTIQYRVVKENADDAFYELQKSPTAIQSYV 443 +++ YR+ ENA L AIQ V Sbjct: 186 IMEIDAVCYYRM--ENASLLLSSLAHVSKAIQFLV 218
>PODO_MOUSE (Q91X05) Podocin| Length = 385 Score = 30.4 bits (67), Expect = 2.2 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 3/95 (3%) Frame = +3 Query: 168 VEQANVAVVEKWGRFL--RLAEPGLHFFNPCAGELVAGTLSTRVQSLDVRV-ETKTKDNV 338 V++ ++ + G L R PGL FF PC + R+Q+L++ E TKD Sbjct: 130 VQEYERVIIFRLGHLLPGRAKGPGLFFFLPCLD--TYHKVDLRLQTLEIPFHEVVTKDMF 187 Query: 339 FVQLICTIQYRVVKENADDAFYELQKSPTAIQSYV 443 +++ YR+ ENA L AIQ V Sbjct: 188 IMEIDAVCYYRM--ENASLLLSSLAHVSKAIQFLV 220
>HFLK_HAEIN (P44546) Protein hflK| Length = 410 Score = 30.4 bits (67), Expect = 2.2 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 8/92 (8%) Frame = +3 Query: 168 VEQANVAVVEKWGRFLRLAEPGLHFFNPCAGELVAGTLSTRVQSLDVRVETKTKDNVFVQ 347 +++A VV ++G + +PGL++ P + V +V+ L + T+D V+ Sbjct: 107 IKEAERGVVLRFGELHSIVQPGLNW-KPTFVDKVLPVNVEQVKELRTQGAMLTQDENMVK 165 Query: 348 LICTIQYRVVK--------ENADDAFYELQKS 419 + T+QYRV NADD+ + S Sbjct: 166 VEMTVQYRVQDPAKYLFSVTNADDSLNQATDS 197
>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2424 Score = 30.0 bits (66), Expect = 2.8 Identities = 16/35 (45%), Positives = 20/35 (57%) Frame = -3 Query: 220 RRRKRPHFSTTATLACSTHPQKRKKALTIPACSRR 116 RRR RP S +T+ C T P KR ++ P SRR Sbjct: 2110 RRRGRPRGSDLSTI-CDTSPMKRSASVLGPKASRR 2143
>PODO_HUMAN (Q9NP85) Podocin| Length = 383 Score = 29.3 bits (64), Expect = 4.8 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 3/95 (3%) Frame = +3 Query: 168 VEQANVAVVEKWGRFL--RLAEPGLHFFNPCAGELVAGTLSTRVQSLDVRV-ETKTKDNV 338 V++ ++ + G L R PGL FF PC + R+Q+L++ E TKD Sbjct: 128 VQEYERVIIFRLGHLLPGRAKGPGLFFFLPCLD--TYHKVDLRLQTLEIPFHEIVTKDMF 185 Query: 339 FVQLICTIQYRVVKENADDAFYELQKSPTAIQSYV 443 +++ YR+ ENA L A+Q V Sbjct: 186 IMEIDAICYYRM--ENASLLLSSLAHVSKAVQFLV 218
>CJ095_HUMAN (Q9H7T3) Protein C10orf95| Length = 257 Score = 29.3 bits (64), Expect = 4.8 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Frame = -3 Query: 232 PGSARRRK-RPHFSTTATLACSTHPQKRKKALTIPACSRRTAGWIGPPVRSMDGR 71 PG+ R RPH +TTA+ A HP+ R+ + R PP S D R Sbjct: 90 PGACMRASGRPHGNTTASTAPPRHPRPRRPGGPALRPTPRPCAGPAPPPASRDCR 144
>YXEQ_BACSU (P54956) Hypothetical protein yxeQ| Length = 445 Score = 29.3 bits (64), Expect = 4.8 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = +3 Query: 141 SAFFLFCGCVEQANVAVVEKWGRFLRLAEPGLHF 242 + FF G VE+A ++ WG R+ +PGL F Sbjct: 232 TGFFSLYGDVEKAQHTLLNDWGAPWRIVQPGLWF 265
>HFLC_VIBPA (P40606) Protein hflC (EC 3.4.-.-)| Length = 326 Score = 29.3 bits (64), Expect = 4.8 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 7/58 (12%) Frame = +3 Query: 168 VEQANVAVVEKWGRFL-------RLAEPGLHFFNPCAGELVAGTLSTRVQSLDVRVET 320 + + +V ++GR L R+ EPGLHF P L RV+ LD R++T Sbjct: 23 IPEGERGIVVRFGRVLKDNNDITRIYEPGLHFKMP---------LFDRVKQLDARIQT 71
>RNPH_MYCLE (P37939) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA| nucleotidyltransferase) Length = 259 Score = 28.5 bits (62), Expect = 8.2 Identities = 13/47 (27%), Positives = 26/47 (55%) Frame = -3 Query: 280 RVPATSSPAQGLKKWRPGSARRRKRPHFSTTATLACSTHPQKRKKAL 140 +V T+SP +G+ +WR GS + + A L +TH + ++++ Sbjct: 38 KVMCTASPTEGVPRWRKGSGKGWLTAEY---AMLPSATHTRSERESV 81 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,162,955 Number of Sequences: 219361 Number of extensions: 694749 Number of successful extensions: 2497 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 2443 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2496 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
