ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast56c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DHN4_HORVU (P12949) Dehydrin DHN4 (B18) 105 6e-23
2DHN3_HORVU (P12948) Dehydrin DHN3 (B17) 63 5e-10
3DHN1_MAIZE (P12950) Dehydrin DHN1 (M3) (RAB-17 protein) 58 2e-08
4DHR21_ORYSA (P12253) Water stress-inducible protein Rab21 54 2e-07
5DH16B_ORYSA (P22911) Dehydrin Rab16B 46 6e-05
6DHN2_HORVU (P12952) Dehydrin DHN2 (B9) 45 8e-05
7DH16C_ORYSA (P22912) Dehydrin Rab16C 45 1e-04
8DHR15_WHEAT (Q00742) Dehydrin Rab15 41 0.002
9DHN1_HORVU (P12951) Dehydrin DHN1 (B8) 40 0.004
10DH16D_ORYSA (P22913) Dehydrin Rab16D 38 0.017

>DHN4_HORVU (P12949) Dehydrin DHN4 (B18)|
          Length = 225

 Score =  105 bits (262), Expect = 6e-23
 Identities = 51/99 (51%), Positives = 51/99 (51%)
 Frame = +1

Query: 79  MEYQGQQHGRVDEYGNPXXXXXXXXXXXXXXXXXXXXXXXXXYQPMRDEHQTGRGILHRX 258
           MEYQGQQHGRVDEYGNP                         YQPMRDEHQTGRGILHR 
Sbjct: 1   MEYQGQQHGRVDEYGNPVAGHGVGTGMGTHGGVGTGAAAGGHYQPMRDEHQTGRGILHRS 60

Query: 259 XXXXXXXXEDDGMGXXXXXXXXXXXXXXLPGGHGDQQHN 375
                   EDDGMG              LPGGHGDQQHN
Sbjct: 61  GSSSSSSSEDDGMGGRRKKGIKEKIKEKLPGGHGDQQHN 99



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>DHN3_HORVU (P12948) Dehydrin DHN3 (B17)|
          Length = 161

 Score = 62.8 bits (151), Expect = 5e-10
 Identities = 34/93 (36%), Positives = 37/93 (39%)
 Frame = +1

Query: 91  GQQHGRVDEYGNPXXXXXXXXXXXXXXXXXXXXXXXXXYQPMRDEHQTGRGILHRXXXXX 270
           G    RVDEYGNP                         +QP R+EH+ G GIL R     
Sbjct: 4   GHATNRVDEYGNPVAGHGVGTGMGAHGGVGTGAAAGGHFQPTREEHKAG-GILQRSGSSS 62

Query: 271 XXXXEDDGMGXXXXXXXXXXXXXXLPGGHGDQQ 369
               EDDGMG              LPGGHGDQQ
Sbjct: 63  SSSSEDDGMGGRRKKGLKDKIKEKLPGGHGDQQ 95



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>DHN1_MAIZE (P12950) Dehydrin DHN1 (M3) (RAB-17 protein)|
          Length = 168

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 41/115 (35%), Positives = 46/115 (40%), Gaps = 17/115 (14%)
 Frame = +1

Query: 79  MEY--QGQQ-HGR---VDEYGNPXXXXXXXXXXXXXXXXXX-----------XXXXXXXY 207
           MEY  QGQ+ HGR   VD+YGNP                                    +
Sbjct: 1   MEYGQQGQRGHGRTGHVDQYGNPVGGVEHGTGGMRHGTGTTGGMGQLGEHGGAGMGGGQF 60

Query: 208 QPMRDEHQTGRGILHRXXXXXXXXXEDDGMGXXXXXXXXXXXXXXLPGGHGDQQH 372
           QP R+EH+TG GILHR         EDDGMG              LPGGH D QH
Sbjct: 61  QPAREEHKTG-GILHRSGSSSSSSSEDDGMGGRRKKGIKEKIKEKLPGGHKDDQH 114



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>DHR21_ORYSA (P12253) Water stress-inducible protein Rab21|
          Length = 172

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 40/123 (32%), Positives = 47/123 (38%), Gaps = 25/123 (20%)
 Frame = +1

Query: 79  MEYQGQQHG----RVDEYGNPXXXXX--------------------XXXXXXXXXXXXXX 186
           ME+QGQ HG    RVDEYGNP                                       
Sbjct: 1   MEHQGQ-HGHVTSRVDEYGNPVGTGAGHGQMGTAGMGTHGTTGGMGTHGTTGGMGTHGTT 59

Query: 187 XXXXXXYQPMRDEHQTGRGILHRXXXXXXXXXEDDGMGXXXXXXXXXXXXXXLPGGH-GD 363
                 +QPMR+EH+TG G+L R         EDDGMG              LPGG+ G+
Sbjct: 60  GTGGGQFQPMREEHKTG-GVLQRSGSSSSSSSEDDGMGGRRKKGIKEKIKEKLPGGNKGE 118

Query: 364 QQH 372
           QQH
Sbjct: 119 QQH 121



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>DH16B_ORYSA (P22911) Dehydrin Rab16B|
          Length = 164

 Score = 45.8 bits (107), Expect = 6e-05
 Identities = 35/109 (32%), Positives = 40/109 (36%), Gaps = 13/109 (11%)
 Frame = +1

Query: 85  YQGQQHG----RVDEYGNPXXXXXXXXXXXX--------XXXXXXXXXXXXXYQPMRDEH 228
           YQGQ HG    RVD YGNP                                 +QP R++H
Sbjct: 4   YQGQ-HGYGADRVDVYGNPVGAGQYGGGATAPGGGHGAMGMGGHAGAGAGGQFQPAREDH 62

Query: 229 QTGRGILHRX-XXXXXXXXEDDGMGXXXXXXXXXXXXXXLPGGHGDQQH 372
           +TG GILHR          EDDGMG              LPGG+    H
Sbjct: 63  KTG-GILHRSGSSSSSSSSEDDGMGGRRKKGIKEKIKEKLPGGNKGNNH 110



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>DHN2_HORVU (P12952) Dehydrin DHN2 (B9)|
          Length = 143

 Score = 45.4 bits (106), Expect = 8e-05
 Identities = 34/107 (31%), Positives = 40/107 (37%), Gaps = 9/107 (8%)
 Frame = +1

Query: 79  MEYQGQQH----GRVDEYGNPXXXXXXXXXX-XXXXXXXXXXXXXXXYQPMRDEHQTGRG 243
           MEYQGQ       +V+EYG P                           QP RD+H+T  G
Sbjct: 1   MEYQGQTGHATTDKVEEYGQPVAGHGGATGGPTGTHGAAAAAAGTGQLQPTRDDHKTD-G 59

Query: 244 ILHRXXXXXXXXXEDDGMGXXXXXXXXXXXXXXLPGG-HGD---QQH 372
           +L R         EDDG+G              LPGG H D   QQH
Sbjct: 60  VLRRSGSSSSSSSEDDGVGGRRKKGMKEKIKEKLPGGAHKDAAGQQH 106



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>DH16C_ORYSA (P22912) Dehydrin Rab16C|
          Length = 164

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 34/102 (33%), Positives = 40/102 (39%), Gaps = 11/102 (10%)
 Frame = +1

Query: 85  YQGQQHG----RVDEYGNPXXXXXXXXXXX------XXXXXXXXXXXXXXYQPMRDEHQT 234
           YQGQ HG    RVD YGNP                               +QP+++EH+T
Sbjct: 4   YQGQ-HGYGADRVDVYGNPVAGQYGGGATAPGGGHGVMGMGGHHAGAGGQFQPVKEEHKT 62

Query: 235 GRGILHRX-XXXXXXXXEDDGMGXXXXXXXXXXXXXXLPGGH 357
           G GILHR          EDDGMG              LPGG+
Sbjct: 63  G-GILHRSGSSSSSSSSEDDGMGGRRKKGIKEKIKEKLPGGN 103



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>DHR15_WHEAT (Q00742) Dehydrin Rab15|
          Length = 149

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 34/103 (33%), Positives = 35/103 (33%), Gaps = 5/103 (4%)
 Frame = +1

Query: 79  MEYQGQQHG---RVDEYGNPXXXXXXXXXXXXXXXXXXXXXXXXXYQPMRDEHQTGRGIL 249
           ME+QGQ      RVDEYGNP                           P        R IL
Sbjct: 1   MEFQGQHDNPANRVDEYGNPFPLAGAWGERTRSRHRRAV--------PGPQGRAQDRWIL 52

Query: 250 HRX-XXXXXXXXEDDGMGXXXXXXXXXXXXXXLPGGHGD-QQH 372
           HR          EDDGMG              LPGGH D QQH
Sbjct: 53  HRSGSSSSSSSSEDDGMGGRRKKGMKEKIKEKLPGGHKDNQQH 95



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>DHN1_HORVU (P12951) Dehydrin DHN1 (B8)|
          Length = 139

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 30/96 (31%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
 Frame = +1

Query: 79  MEYQGQQHG----RVDEYGNPXXXXXXXXXXXXXXXXXXXXXXXXXYQPMRDEHQTGRGI 246
           MEYQGQ HG    +V+EYG P                          Q  RD H+T  G+
Sbjct: 1   MEYQGQ-HGHATDKVEEYGQPVAGHGGFTGGPTGTHGAAGVGGAQL-QATRDGHKTD-GV 57

Query: 247 LHRXXXXXXXXXEDDGMGXXXXXXXXXXXXXXLPGG 354
           L R         EDDG+G              LPGG
Sbjct: 58  LRRSGSSSSSSSEDDGVGGRRKKGMKEKIKEKLPGG 93



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>DH16D_ORYSA (P22913) Dehydrin Rab16D|
          Length = 151

 Score = 37.7 bits (86), Expect = 0.017
 Identities = 29/98 (29%), Positives = 36/98 (36%), Gaps = 5/98 (5%)
 Frame = +1

Query: 79  MEYQGQQHG----RVDEYGNPXXXXXXXXXXXXXXXXXXXXXXXXXYQPMRDEHQTGRGI 246
           MEYQGQ  G    R DE+GNP                          +P R++ +T  G+
Sbjct: 1   MEYQGQHGGHASSRADEHGNPAVTTGNAPTGMGAGHIQ---------EPAREDKKTD-GV 50

Query: 247 LHRX-XXXXXXXXEDDGMGXXXXXXXXXXXXXXLPGGH 357
           L R          EDDGMG              LPGG+
Sbjct: 51  LRRSGSSSSSSSSEDDGMGGRRKKGIKEKIKEKLPGGN 88


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,210,080
Number of Sequences: 219361
Number of extensions: 565189
Number of successful extensions: 1701
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1693
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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