ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast56c06 |
|---|---|
| Clone Library Name | barley_pub |
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 92.4 bits (228), Expect = 5e-19 Identities = 45/79 (56%), Positives = 53/79 (67%) Frame = +2 Query: 230 DTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXX 409 DTT TK+FVGGL + T LR++FE +GDI EAVVITDR TG+S+GYGFVT Sbjct: 28 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAD 87 Query: 410 XXXXDPNPTITGRRANCTL 466 DPNP I GR+AN L Sbjct: 88 RACKDPNPIIDGRKANVNL 106
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 92.4 bits (228), Expect = 5e-19 Identities = 45/79 (56%), Positives = 53/79 (67%) Frame = +2 Query: 230 DTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXX 409 DTT TK+FVGGL + T LR++FE +GDI EAVVITDR TG+S+GYGFVT Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66 Query: 410 XXXXDPNPTITGRRANCTL 466 DPNP I GR+AN L Sbjct: 67 RACKDPNPIIDGRKANVNL 85
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 67.0 bits (162), Expect = 2e-11 Identities = 27/48 (56%), Positives = 40/48 (83%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+F+GGL+W+T EGLR++F Q+G++ E +V+ D LT RS+G+GFVTF Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68 Score = 54.3 bits (129), Expect = 2e-07 Identities = 23/52 (44%), Positives = 37/52 (71%) Frame = +2 Query: 233 TTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T K+FVGGL+ T E ++ +FEQ+G + +A+++ D+ T R +G+GFVTF Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 157
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 67.0 bits (162), Expect = 2e-11 Identities = 27/48 (56%), Positives = 40/48 (83%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+F+GGL+W+T EGLR++F Q+G++ E +V+ D LT RS+G+GFVTF Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68 Score = 54.3 bits (129), Expect = 2e-07 Identities = 23/52 (44%), Positives = 37/52 (71%) Frame = +2 Query: 233 TTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T K+FVGGL+ T E ++ +FEQ+G + +A+++ D+ T R +G+GFVTF Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 157
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 67.0 bits (162), Expect = 2e-11 Identities = 27/48 (56%), Positives = 40/48 (83%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+F+GGL+W+T EGLR++F Q+G++ E +V+ D LT RS+G+GFVTF Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68 Score = 56.2 bits (134), Expect = 4e-08 Identities = 24/52 (46%), Positives = 38/52 (73%) Frame = +2 Query: 233 TTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T K+FVGGL+ T E ++Q+FEQ+G + +A+++ D+ T R +G+GFVTF Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 157
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 66.6 bits (161), Expect = 3e-11 Identities = 30/48 (62%), Positives = 37/48 (77%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 + FVGGLAW T +E L F YG+IL++ VITDR TGRS+G+GFVTF Sbjct: 9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTF 56
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 65.9 bits (159), Expect = 5e-11 Identities = 29/48 (60%), Positives = 36/48 (75%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 + FVGGLAW T E L Q F Q+GDI ++ +I DR TGRS+G+GFVTF Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTF 54
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 63.9 bits (154), Expect = 2e-10 Identities = 27/48 (56%), Positives = 35/48 (72%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 + FVGGLAW T L F QYGD++++ +I DR TGRS+G+GFVTF Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTF 56
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 63.9 bits (154), Expect = 2e-10 Identities = 28/48 (58%), Positives = 37/48 (77%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 + FVGGLAW T +E L Q F +G ++++ VITDR TGRS+G+GFVTF Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTF 56
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 63.5 bits (153), Expect = 3e-10 Identities = 27/48 (56%), Positives = 35/48 (72%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 + FVGGLAW T L F QYG++L++ +I DR TGRS+G+GFVTF Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTF 56
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 63.5 bits (153), Expect = 3e-10 Identities = 26/48 (54%), Positives = 38/48 (79%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 + FVGGLAW T E L++ F Q+GD++++ +I DR +GRS+G+GFVTF Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTF 54
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 63.5 bits (153), Expect = 3e-10 Identities = 27/49 (55%), Positives = 36/49 (73%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 TK+F+GGL+W T LR F +GD+++A VI DR TGRS+G+GFV F Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 63.2 bits (152), Expect = 3e-10 Identities = 29/68 (42%), Positives = 44/68 (64%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXD 424 K+FVGGL+WET E L ++F ++GDI++ VV+ + +GRS+G+GFVTF + Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67 Query: 425 PNPTITGR 448 T+ GR Sbjct: 68 GPHTLDGR 75 Score = 43.9 bits (102), Expect = 2e-04 Identities = 19/48 (39%), Positives = 30/48 (62%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 KVF+GGL LR F +YG + E V++ D+ +S+G+GF++F Sbjct: 97 KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSF 144
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 61.6 bits (148), Expect = 1e-09 Identities = 25/48 (52%), Positives = 38/48 (79%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+F+GGL + T E L+QHFEQ+G+I++ VV+ D T RS+G+GF+T+ Sbjct: 18 KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITY 65 Score = 48.9 bits (115), Expect = 6e-06 Identities = 20/51 (39%), Positives = 32/51 (62%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T K+FVGG+ E LR +F+QYG ++ A ++ D+ T + +G+ FV F Sbjct: 106 TVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEF 156
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 61.2 bits (147), Expect = 1e-09 Identities = 24/48 (50%), Positives = 36/48 (75%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+FVGGL W T E LR +F QYG++++ V++ D+ T +S+G+GFV F Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF 58 Score = 47.4 bits (111), Expect = 2e-05 Identities = 30/106 (28%), Positives = 46/106 (43%) Frame = +2 Query: 71 NRARNLVHRGLARSPSTEASFLVASTRSKAGGRGGVMXXXXXXXXXXXXXRFGDTTQTKV 250 +R L R + P T TR K G + G R + K+ Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGP--------------RSDSSKSNKI 115 Query: 251 FVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 FVGG+ LR++F+++G + E V+I D R +G+GF+TF Sbjct: 116 FVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITF 161
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 61.2 bits (147), Expect = 1e-09 Identities = 24/48 (50%), Positives = 36/48 (75%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+FVGGL W T E LR +F QYG++++ V++ D+ T +S+G+GFV F Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF 58 Score = 43.9 bits (102), Expect = 2e-04 Identities = 19/56 (33%), Positives = 33/56 (58%) Frame = +2 Query: 221 RFGDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 R ++ K+FVGG+ L+++F ++G + E V+I D R +G+GF+TF Sbjct: 107 RTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITF 162
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 61.2 bits (147), Expect = 1e-09 Identities = 24/48 (50%), Positives = 36/48 (75%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+FVGGL W T E LR +F QYG++++ V++ D+ T +S+G+GFV F Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF 58 Score = 47.8 bits (112), Expect = 1e-05 Identities = 30/106 (28%), Positives = 47/106 (44%) Frame = +2 Query: 71 NRARNLVHRGLARSPSTEASFLVASTRSKAGGRGGVMXXXXXXXXXXXXXRFGDTTQTKV 250 +R L R + P T TR K G + G R ++ K+ Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGP--------------RSDNSKSNKI 115 Query: 251 FVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 FVGG+ LR++F+++G + E V+I D R +G+GF+TF Sbjct: 116 FVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITF 161
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 60.8 bits (146), Expect = 2e-09 Identities = 26/48 (54%), Positives = 37/48 (77%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+F+GGL++ET E LR HFEQ+G + + VV+ D T RS+G+GFVT+ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61 Score = 53.5 bits (127), Expect = 3e-07 Identities = 28/75 (37%), Positives = 39/75 (52%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXX 415 T K+FVGG+ +T LR +FEQYG I ++TDR +G+ +G+ FVTF Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 161 Query: 416 XXDPNPTITGRRANC 460 T+ G NC Sbjct: 162 VIQKYHTVNGH--NC 174
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 60.8 bits (146), Expect = 2e-09 Identities = 26/48 (54%), Positives = 37/48 (77%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+F+GGL++ET E LR HFEQ+G + + VV+ D T RS+G+GFVT+ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61 Score = 53.5 bits (127), Expect = 3e-07 Identities = 28/75 (37%), Positives = 39/75 (52%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXX 415 T K+FVGG+ +T LR +FEQYG I ++TDR +G+ +G+ FVTF Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 161 Query: 416 XXDPNPTITGRRANC 460 T+ G NC Sbjct: 162 VIQKYHTVNGH--NC 174
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 60.8 bits (146), Expect = 2e-09 Identities = 25/48 (52%), Positives = 38/48 (79%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+F+GGL++ET + LR+HFEQ+G + + VV+ D T RS+G+GFVT+ Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTY 75 Score = 48.9 bits (115), Expect = 6e-06 Identities = 23/51 (45%), Positives = 32/51 (62%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T K+FVGG+ +T LR +FE YG I V+ DR +G+ +G+ FVTF Sbjct: 116 TVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTF 166
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 60.8 bits (146), Expect = 2e-09 Identities = 25/48 (52%), Positives = 38/48 (79%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+F+GGL++ET + LR+HFEQ+G + + VV+ D T RS+G+GFVT+ Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTY 75 Score = 47.4 bits (111), Expect = 2e-05 Identities = 27/75 (36%), Positives = 36/75 (48%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXX 415 T K+FVGG+ +T LR + E YG I V+ DR +G+ +G+ FVTF Sbjct: 116 TVKKIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 175 Query: 416 XXDPNPTITGRRANC 460 TI G NC Sbjct: 176 VVQKYHTINGH--NC 188
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 60.8 bits (146), Expect = 2e-09 Identities = 26/48 (54%), Positives = 37/48 (77%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+F+GGL++ET E LR HFEQ+G + + VV+ D T RS+G+GFVT+ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61 Score = 53.5 bits (127), Expect = 3e-07 Identities = 28/75 (37%), Positives = 39/75 (52%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXX 415 T K+FVGG+ +T LR +FEQYG I ++TDR +G+ +G+ FVTF Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 161 Query: 416 XXDPNPTITGRRANC 460 T+ G NC Sbjct: 162 VIQKYHTVNGH--NC 174
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 60.8 bits (146), Expect = 2e-09 Identities = 26/48 (54%), Positives = 37/48 (77%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+F+GGL++ET E LR HFEQ+G + + VV+ D T RS+G+GFVT+ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61 Score = 53.5 bits (127), Expect = 3e-07 Identities = 28/75 (37%), Positives = 39/75 (52%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXX 415 T K+FVGG+ +T LR +FEQYG I ++TDR +G+ +G+ FVTF Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 161 Query: 416 XXDPNPTITGRRANC 460 T+ G NC Sbjct: 162 VIQKYHTVNGH--NC 174
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 60.8 bits (146), Expect = 2e-09 Identities = 26/48 (54%), Positives = 37/48 (77%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+F+GGL++ET E LR HFEQ+G + + VV+ D T RS+G+GFVT+ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61 Score = 53.5 bits (127), Expect = 3e-07 Identities = 28/75 (37%), Positives = 39/75 (52%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXX 415 T K+FVGG+ +T LR +FEQYG I ++TDR +G+ +G+ FVTF Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKI 161 Query: 416 XXDPNPTITGRRANC 460 T+ G NC Sbjct: 162 VIQKYHTVNGH--NC 174
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 60.5 bits (145), Expect = 2e-09 Identities = 25/48 (52%), Positives = 35/48 (72%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 + FVGGLAW T L F Q+G+++++ +I DR TGRS+G+GFVTF Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTF 56
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 60.5 bits (145), Expect = 2e-09 Identities = 25/48 (52%), Positives = 36/48 (75%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 + FVGGLAW T L + F Q+G+++++ +I DR TGRS+G+GFVTF Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTF 54
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 60.1 bits (144), Expect = 3e-09 Identities = 25/48 (52%), Positives = 38/48 (79%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+F+GGL++ET E LR+HFEQ+G + + VV+ D + RS+G+GFVT+ Sbjct: 15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTY 62 Score = 54.7 bits (130), Expect = 1e-07 Identities = 24/51 (47%), Positives = 36/51 (70%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T K+FVGG+ +T + LR++FEQYG I ++TDR +G+ +G+ FVTF Sbjct: 103 TVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 153
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 60.1 bits (144), Expect = 3e-09 Identities = 24/48 (50%), Positives = 37/48 (77%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+F+GGL+W+T + LR +F ++G+I E +V+ D T RS+G+GFVTF Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTF 69 Score = 56.2 bits (134), Expect = 4e-08 Identities = 24/52 (46%), Positives = 38/52 (73%) Frame = +2 Query: 233 TTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T K+FVGGL+ T E ++Q+FEQ+G + +A+++ D+ T R +G+GFVTF Sbjct: 107 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF 158
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 60.1 bits (144), Expect = 3e-09 Identities = 24/48 (50%), Positives = 37/48 (77%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+F+GGL+W+T + LR +F ++G+I E +V+ D T RS+G+GFVTF Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTF 69 Score = 56.2 bits (134), Expect = 4e-08 Identities = 24/52 (46%), Positives = 38/52 (73%) Frame = +2 Query: 233 TTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T K+FVGGL+ T E ++Q+FEQ+G + +A+++ D+ T R +G+GFVTF Sbjct: 107 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF 158
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 59.3 bits (142), Expect = 5e-09 Identities = 27/48 (56%), Positives = 36/48 (75%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+FVGGL+++T + L Q F +YG I E VV+ DR T RS+G+GFVTF Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTF 54
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 59.3 bits (142), Expect = 5e-09 Identities = 27/48 (56%), Positives = 36/48 (75%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+FVGGL+++T + L Q F +YG I E VV+ DR T RS+G+GFVTF Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTF 54
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 59.3 bits (142), Expect = 5e-09 Identities = 27/48 (56%), Positives = 36/48 (75%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+FVGGL+++T + L Q F +YG I E VV+ DR T RS+G+GFVTF Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTF 54
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 59.3 bits (142), Expect = 5e-09 Identities = 27/48 (56%), Positives = 36/48 (75%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+FVGGL+++T + L Q F +YG I E VV+ DR T RS+G+GFVTF Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTF 54
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 59.3 bits (142), Expect = 5e-09 Identities = 27/48 (56%), Positives = 36/48 (75%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+FVGGL+++T + L Q F +YG I E VV+ DR T RS+G+GFVTF Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTF 54
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 59.3 bits (142), Expect = 5e-09 Identities = 24/48 (50%), Positives = 38/48 (79%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+F+GGL++ET + LR+HFE++G + + VV+ D T RS+G+GFVT+ Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83 Score = 51.6 bits (122), Expect = 1e-06 Identities = 28/75 (37%), Positives = 38/75 (50%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXX 415 T K+FVGG+ +T LR +FE+YG I V+ DR +G+ +G+ FVTF Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183 Query: 416 XXDPNPTITGRRANC 460 TI G NC Sbjct: 184 VVQKYHTINGH--NC 196
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 59.3 bits (142), Expect = 5e-09 Identities = 24/48 (50%), Positives = 38/48 (79%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+F+GGL++ET + LR+HFE++G + + VV+ D T RS+G+GFVT+ Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83 Score = 51.6 bits (122), Expect = 1e-06 Identities = 28/75 (37%), Positives = 38/75 (50%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXX 415 T K+FVGG+ +T LR +FE+YG I V+ DR +G+ +G+ FVTF Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183 Query: 416 XXDPNPTITGRRANC 460 TI G NC Sbjct: 184 VVQKYHTINGH--NC 196
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 59.3 bits (142), Expect = 5e-09 Identities = 24/48 (50%), Positives = 38/48 (79%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+F+GGL++ET + LR+HFE++G + + VV+ D T RS+G+GFVT+ Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83 Score = 51.6 bits (122), Expect = 1e-06 Identities = 28/75 (37%), Positives = 38/75 (50%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXX 415 T K+FVGG+ +T LR +FE+YG I V+ DR +G+ +G+ FVTF Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183 Query: 416 XXDPNPTITGRRANC 460 TI G NC Sbjct: 184 VVQKYHTINGH--NC 196
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 59.3 bits (142), Expect = 5e-09 Identities = 28/68 (41%), Positives = 41/68 (60%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXD 424 K+F+GGL++ET E LR ++EQ+G + + VV+ D + RS+G+GFVTF Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMAT 69 Query: 425 PNPTITGR 448 TI GR Sbjct: 70 RPHTIDGR 77 Score = 53.9 bits (128), Expect = 2e-07 Identities = 27/73 (36%), Positives = 39/73 (53%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXX 415 T K+FVGG+ +T LR++FE+YG I +ITD+ +G+ +G+ FVTF Sbjct: 98 TVKKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKI 157 Query: 416 XXDPNPTITGRRA 454 TI G A Sbjct: 158 VLQKYHTINGHNA 170
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 58.5 bits (140), Expect = 8e-09 Identities = 27/68 (39%), Positives = 41/68 (60%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXD 424 K+F+GGL++ET E LR ++EQ+G + + VV+ D + RS+G+GFVTF Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69 Query: 425 PNPTITGR 448 +I GR Sbjct: 70 RPHSIDGR 77 Score = 56.2 bits (134), Expect = 4e-08 Identities = 29/73 (39%), Positives = 39/73 (53%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXX 415 T K+FVGG+ +T LR +FE+YG I +ITDR +G+ +G+GFVTF Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 157 Query: 416 XXDPNPTITGRRA 454 TI G A Sbjct: 158 VLQKYHTINGHNA 170
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 58.5 bits (140), Expect = 8e-09 Identities = 26/48 (54%), Positives = 34/48 (70%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+FVGGL+WET + LR HF +YG+I V TD TGRS+G+ F+ F Sbjct: 57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVF 104 Score = 47.0 bits (110), Expect = 2e-05 Identities = 22/71 (30%), Positives = 36/71 (50%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXD 424 K+FVGGL E E ++ +F Q+G+I+E + D+ + KG+ F+TF Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKT 196 Query: 425 PNPTITGRRAN 457 P I G+ + Sbjct: 197 PKQKIAGKEVD 207
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 58.5 bits (140), Expect = 8e-09 Identities = 27/68 (39%), Positives = 41/68 (60%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXD 424 K+F+GGL++ET E LR ++EQ+G + + VV+ D + RS+G+GFVTF Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81 Query: 425 PNPTITGR 448 +I GR Sbjct: 82 RPHSIDGR 89 Score = 56.2 bits (134), Expect = 4e-08 Identities = 29/73 (39%), Positives = 39/73 (53%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXX 415 T K+FVGG+ +T LR +FE+YG I +ITDR +G+ +G+GFVTF Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169 Query: 416 XXDPNPTITGRRA 454 TI G A Sbjct: 170 VLQKYHTINGHNA 182
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 58.5 bits (140), Expect = 8e-09 Identities = 21/48 (43%), Positives = 37/48 (77%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+F+GGL+W+T + L+ +F ++GD+++ + D +TGRS+G+GFV F Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLF 143 Score = 44.7 bits (104), Expect = 1e-04 Identities = 18/48 (37%), Positives = 32/48 (66%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+FVGGL+ +TP E +R++F +G++ + D T + +G+ F+TF Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 228
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 58.5 bits (140), Expect = 8e-09 Identities = 23/48 (47%), Positives = 38/48 (79%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+F+GGL + T +GL+ HFE++G+I++ VV+ D T RS+G+GF+T+ Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITY 72 Score = 47.0 bits (110), Expect = 2e-05 Identities = 19/51 (37%), Positives = 34/51 (66%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T K+FVGGL + E LR++F+ +G I+ +++D+ TG+ +G+ F+ F Sbjct: 113 TVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEF 163
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 58.2 bits (139), Expect = 1e-08 Identities = 28/68 (41%), Positives = 40/68 (58%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXD 424 K+F+GGL++ET E LR +EQ+G + + VV+ D + RS+G+GFVTF Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSA 69 Query: 425 PNPTITGR 448 TI GR Sbjct: 70 RPHTIDGR 77 Score = 57.0 bits (136), Expect = 2e-08 Identities = 28/73 (38%), Positives = 40/73 (54%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXX 415 T K+FVGG+ +T LR++FE+YG I +ITD+ +G+ +G+GFVTF Sbjct: 98 TVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKI 157 Query: 416 XXDPNPTITGRRA 454 TI G A Sbjct: 158 VLQKYHTINGHNA 170
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 57.4 bits (137), Expect = 2e-08 Identities = 23/48 (47%), Positives = 37/48 (77%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+F+GGL + T E L+ HFE++G+I++ VV+ D T RS+G+GF+T+ Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITY 79 Score = 44.3 bits (103), Expect = 2e-04 Identities = 17/51 (33%), Positives = 33/51 (64%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T K+FVG L + + +R +F+ +G+I++ ++ D+ TG+ +G+ FV F Sbjct: 120 TVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEF 170
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 57.4 bits (137), Expect = 2e-08 Identities = 25/48 (52%), Positives = 33/48 (68%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+FVGGL + T + L HF +G I E VV+ DR T RS+G+GF+TF Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITF 54
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 57.4 bits (137), Expect = 2e-08 Identities = 25/48 (52%), Positives = 33/48 (68%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+FVGGL + T + L HF +G I E VV+ DR T RS+G+GF+TF Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITF 54
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 57.0 bits (136), Expect = 2e-08 Identities = 21/48 (43%), Positives = 36/48 (75%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+F+GGL W+T + LR++F +YG + + ++ D TGRS+G+GF++F Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSF 207 Score = 47.4 bits (111), Expect = 2e-05 Identities = 19/48 (39%), Positives = 34/48 (70%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+FVGG+ + + + F Q+G I++A ++ D+ TG+S+G+GFVT+ Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTY 291
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 57.0 bits (136), Expect = 2e-08 Identities = 27/48 (56%), Positives = 35/48 (72%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+F+GGL +ET + L Q F +YG I E VV+ DR T RS+G+GFVTF Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTF 53
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 57.0 bits (136), Expect = 2e-08 Identities = 20/48 (41%), Positives = 37/48 (77%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+F+GGL+W+T + L+ +F ++G++++ + D +TGRS+G+GFV F Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF 145 Score = 44.7 bits (104), Expect = 1e-04 Identities = 18/48 (37%), Positives = 32/48 (66%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+FVGGL+ +TP E +R++F +G++ + D T + +G+ F+TF Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 57.0 bits (136), Expect = 2e-08 Identities = 20/48 (41%), Positives = 37/48 (77%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+F+GGL+W+T + L+ +F ++G++++ + D +TGRS+G+GFV F Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF 145 Score = 44.7 bits (104), Expect = 1e-04 Identities = 18/48 (37%), Positives = 32/48 (66%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+FVGGL+ +TP E +R++F +G++ + D T + +G+ F+TF Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 57.0 bits (136), Expect = 2e-08 Identities = 26/56 (46%), Positives = 36/56 (64%) Frame = +2 Query: 221 RFGDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 R+G ++FVGG+ ++T LR+ F QYG + E ++ DR G SKGYGFVTF Sbjct: 26 RYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTF 80
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 57.0 bits (136), Expect = 2e-08 Identities = 26/56 (46%), Positives = 36/56 (64%) Frame = +2 Query: 221 RFGDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 R+G ++FVGG+ ++T LR+ F QYG + E ++ DR G SKGYGFVTF Sbjct: 26 RYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTF 80
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 56.6 bits (135), Expect = 3e-08 Identities = 25/56 (44%), Positives = 36/56 (64%) Frame = +2 Query: 221 RFGDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 R+G ++FVGG+ ++T LR+ F QYG + E ++ DR G SKGYGF+TF Sbjct: 26 RYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFITF 80
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 55.8 bits (133), Expect = 5e-08 Identities = 33/81 (40%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Frame = +2 Query: 230 DTTQT-KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXX-XXX 403 D+ +T VFVG L+W + L Q FE+YG I+ A VI D +GRSKGYG+V F Sbjct: 258 DSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAA 317 Query: 404 XXXXXXDPNPTITGRRANCTL 466 + I GR N L Sbjct: 318 KAAVAANGTKEIDGRMVNLDL 338 Score = 38.9 bits (89), Expect = 0.007 Identities = 20/47 (42%), Positives = 27/47 (57%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 VFVG L++ + L F GDI + TD +GR KG+G+VTF Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 55.8 bits (133), Expect = 5e-08 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 4/93 (4%) Frame = +2 Query: 122 EASFLVASTRSKAGGRGGVMXXXXXXXXXXXXXRFGDTTQT----KVFVGGLAWETPSEG 289 E S A+ + AG GG + + K+FVGGL+W+T + Sbjct: 31 EPSAAAAAPAASAGSGGGTTTAPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKD 90 Query: 290 LRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 L+ +F ++G++++ + D TGRS+G+GF+ F Sbjct: 91 LKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF 123 Score = 39.3 bits (90), Expect = 0.005 Identities = 18/48 (37%), Positives = 29/48 (60%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+FVGGL E E +R++F Q+G+I + D + +G+ F+TF Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITF 207
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 55.5 bits (132), Expect = 7e-08 Identities = 20/48 (41%), Positives = 36/48 (75%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+FVGGL+W+T + L+ +F ++G++++ + D TGRS+G+GF+ F Sbjct: 69 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF 116 Score = 37.4 bits (85), Expect = 0.019 Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Frame = +2 Query: 245 KVFVGGLAWETPSEG-LRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+FVGGL E+P+E +R++F ++G+I + D + +G+ F+TF Sbjct: 153 KIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITF 201
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 53.5 bits (127), Expect = 3e-07 Identities = 23/47 (48%), Positives = 34/47 (72%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVT 385 +V+VG L W+ + L Q F ++G ++EA V+ DR TGRS+G+GFVT Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVT 291 Score = 46.2 bits (108), Expect = 4e-05 Identities = 23/49 (46%), Positives = 33/49 (67%) Frame = +2 Query: 239 QTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVT 385 + K+FVG LA++ S+ L FEQ G + A VI +R T +S+G+GFVT Sbjct: 149 EAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVT 197
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 53.5 bits (127), Expect = 3e-07 Identities = 22/47 (46%), Positives = 34/47 (72%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVT 385 +V+VG L W+ + L Q F ++G ++ A V++DR TGRS+G+GFVT Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVT 196 Score = 41.6 bits (96), Expect = 0.001 Identities = 22/49 (44%), Positives = 31/49 (63%) Frame = +2 Query: 239 QTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVT 385 + K+FVG L ++ SE L F+ G + A VI +R T RS+G+GFVT Sbjct: 54 EAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVT 102
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 52.4 bits (124), Expect = 6e-07 Identities = 22/48 (45%), Positives = 34/48 (70%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+FVGGL T + +R+ + Q+G+I + +V+ D T RS+G+GFVTF Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 71 Score = 40.8 bits (94), Expect = 0.002 Identities = 17/71 (23%), Positives = 37/71 (52%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXD 424 +++V G+ + + L ++F +YG + ++ +I D+ T + +G+GFVTF Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQ 174 Query: 425 PNPTITGRRAN 457 + + G R + Sbjct: 175 KSHMVNGHRCD 185
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 52.0 bits (123), Expect = 8e-07 Identities = 22/49 (44%), Positives = 34/49 (69%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 TK+++GGL+ T L+ F + + EA V+T+++TGRS+GYGFV F Sbjct: 31 TKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNF 79
>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)| Length = 289 Score = 52.0 bits (123), Expect = 8e-07 Identities = 27/54 (50%), Positives = 33/54 (61%) Frame = +2 Query: 227 GDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 G VFVGG+ +R +FEQYG + E +ITDR TG SKGYGFV+F Sbjct: 31 GKIMPNTVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDR-TGVSKGYGFVSF 83
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 51.2 bits (121), Expect = 1e-06 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXD- 424 +FVG L+W E L++ FE G ++ A VI +R T RS+GYG+V F + Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229 Query: 425 PNPTITGRRANCTL 466 I GR NC + Sbjct: 230 QGKEIDGRPINCDM 243 Score = 34.3 bits (77), Expect = 0.16 Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 3/59 (5%) Frame = +2 Query: 221 RFGDTTQTK---VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +FGDT +F+G L++ + + + F ++G+++ + T T + KG+G+V F Sbjct: 257 KFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQF 315
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 51.2 bits (121), Expect = 1e-06 Identities = 21/51 (41%), Positives = 34/51 (66%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 + +V+VG LAW + L F + G +++A V+ DR +GRS+G+GFVT+ Sbjct: 186 SSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTY 236 Score = 48.9 bits (115), Expect = 6e-06 Identities = 23/47 (48%), Positives = 32/47 (68%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVT 385 K+FVG L + S L + FE+ G++ VI D+LTGRS+G+GFVT Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVT 134
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 51.2 bits (121), Expect = 1e-06 Identities = 21/51 (41%), Positives = 34/51 (66%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 + +V+VG LAW + L F + G +++A V+ DR +GRS+G+GFVT+ Sbjct: 192 SSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTY 242 Score = 48.9 bits (115), Expect = 6e-06 Identities = 23/47 (48%), Positives = 32/47 (68%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVT 385 K+FVG L + S L + FE+ G++ VI D+LTGRS+G+GFVT Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVT 134
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 51.2 bits (121), Expect = 1e-06 Identities = 24/54 (44%), Positives = 34/54 (62%) Frame = +2 Query: 227 GDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 G + +V+VG L+W L F + G ++EA VI DR +GRSKG+GFVT+ Sbjct: 199 GAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTY 252 Score = 47.4 bits (111), Expect = 2e-05 Identities = 23/47 (48%), Positives = 31/47 (65%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVT 385 K+FVG L + S L Q FE G++ VI D++TGRS+G+GFVT Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVT 138
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 50.8 bits (120), Expect = 2e-06 Identities = 20/51 (39%), Positives = 36/51 (70%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 + +V+VG L+W L++ F + G++++A V+ DR +GRS+G+GFVT+ Sbjct: 205 SSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTY 255 Score = 46.6 bits (109), Expect = 3e-05 Identities = 23/47 (48%), Positives = 31/47 (65%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVT 385 K+FVG L + S L FE+ G++ VI D+LTGRS+G+GFVT Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVT 134
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 50.8 bits (120), Expect = 2e-06 Identities = 22/48 (45%), Positives = 33/48 (68%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+F+GGL +T GLR HFE +G + + VV+ + T RS+ +GFVT+ Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTY 55 Score = 48.1 bits (113), Expect = 1e-05 Identities = 20/48 (41%), Positives = 32/48 (66%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+FVGGL + L +HF Q+G + +A +I D+ +G+ +G+GFV F Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYF 146
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 50.8 bits (120), Expect = 2e-06 Identities = 20/51 (39%), Positives = 36/51 (70%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 + +V+VG L+W L++ F + G++++A V+ DR +GRS+G+GFVT+ Sbjct: 206 SSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTY 256 Score = 44.7 bits (104), Expect = 1e-04 Identities = 22/47 (46%), Positives = 31/47 (65%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVT 385 K+FVG L + S L FE+ G++ VI D+L+GRS+G+GFVT Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVT 135
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 50.1 bits (118), Expect = 3e-06 Identities = 27/80 (33%), Positives = 39/80 (48%) Frame = +2 Query: 146 TRSKAGGRGGVMXXXXXXXXXXXXXRFGDTTQTKVFVGGLAWETPSEGLRQHFEQYGDIL 325 ++ GG GG G + +++VG L+W L F + G ++ Sbjct: 228 SQRSGGGYGGSQRSSYGSGSGSGS---GSGSGNRLYVGNLSWGVDDMALENLFNEQGKVV 284 Query: 326 EAVVITDRLTGRSKGYGFVT 385 EA VI DR +GRSKG+GFVT Sbjct: 285 EARVIYDRDSGRSKGFGFVT 304 Score = 47.8 bits (112), Expect = 1e-05 Identities = 23/47 (48%), Positives = 32/47 (68%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVT 385 K+FVG L++ S L Q FE G++ VI D++TGRS+G+GFVT Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVT 146
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 50.1 bits (118), Expect = 3e-06 Identities = 21/48 (43%), Positives = 34/48 (70%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+F+GGLA T E L+ + Q+G +++ VV+ D T RS+G+GF+T+ Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITY 80 Score = 47.8 bits (112), Expect = 1e-05 Identities = 20/48 (41%), Positives = 33/48 (68%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+FVGGL E LR++F Q+G+++ ++TD+ TG+ +G+ FV F Sbjct: 124 KLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEF 171
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 50.1 bits (118), Expect = 3e-06 Identities = 24/62 (38%), Positives = 35/62 (56%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXD 424 K+F+GGL ET + L F +YG I+E +++ DR T +S+G+ FVTF D Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68 Query: 425 PN 430 N Sbjct: 69 MN 70
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 50.1 bits (118), Expect = 3e-06 Identities = 22/48 (45%), Positives = 31/48 (64%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K++V L+W S+GLR F + A VI DR +GRS+G+GF+TF Sbjct: 218 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITF 265 Score = 38.1 bits (87), Expect = 0.011 Identities = 16/47 (34%), Positives = 28/47 (59%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVT 385 +++VG L + S L + F + G + ++ DR+T RS+G+ FVT Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVT 161
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 49.7 bits (117), Expect = 4e-06 Identities = 26/74 (35%), Positives = 38/74 (51%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXDP 427 + V GL W+T + L+++F +G++L V D TG SKG+GFV F Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165 Query: 428 NPTITGRRANCTLP 469 + I GR +C LP Sbjct: 166 H-MIDGRWCDCKLP 178 Score = 32.0 bits (71), Expect = 0.82 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 KVFVG + + LR+ F QYGD+++ + + + FVTF Sbjct: 192 KVFVGRCTEDMTEDELREFFSQYGDVMDVFI-----PKPFRAFAFVTF 234
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 49.3 bits (116), Expect = 5e-06 Identities = 24/62 (38%), Positives = 35/62 (56%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXD 424 K+F+GGL ET + L F +YG I+E +++ DR T +S+G+ FVTF D Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68 Query: 425 PN 430 N Sbjct: 69 MN 70
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 48.9 bits (115), Expect = 6e-06 Identities = 23/47 (48%), Positives = 32/47 (68%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 VFVG L+ E +E ++ F +G I +A V+ D TG+SKGYGFV+F Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 145 Score = 32.7 bits (73), Expect = 0.48 Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 1/72 (1%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXDP 427 V+ GG+A + +RQ F +G I+E V + KGY FV F Sbjct: 207 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSV 260 Query: 428 N-PTITGRRANC 460 N TI G C Sbjct: 261 NGTTIEGHVVKC 272
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 48.9 bits (115), Expect = 6e-06 Identities = 23/47 (48%), Positives = 32/47 (68%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 VFVG L+ E +E ++ F +G I +A V+ D TG+SKGYGFV+F Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 162 Score = 32.7 bits (73), Expect = 0.48 Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 1/72 (1%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXDP 427 V+ GG+A + +RQ F +G I+E V + KGY FV F Sbjct: 224 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSV 277 Query: 428 N-PTITGRRANC 460 N TI G C Sbjct: 278 NGTTIEGHVVKC 289
>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 48.9 bits (115), Expect = 6e-06 Identities = 26/74 (35%), Positives = 37/74 (50%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXDP 427 + V GL W+T + L+ +F +G++L V D TG SKG+GFV F Sbjct: 106 LIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165 Query: 428 NPTITGRRANCTLP 469 + I GR +C LP Sbjct: 166 H-MIDGRWCDCKLP 178 Score = 29.6 bits (65), Expect = 4.1 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 KVFVG + +E L+Q F QYG++++ + + + FVTF Sbjct: 192 KVFVGRCTEDMTAEELQQFFCQYGEVVDVFI-----PKPFRAFAFVTF 234
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 48.5 bits (114), Expect = 8e-06 Identities = 20/47 (42%), Positives = 31/47 (65%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVT 385 +++VG + W L Q F ++G ++ A V+ DR TGRS+G+GFVT Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVT 277 Score = 46.6 bits (109), Expect = 3e-05 Identities = 24/47 (51%), Positives = 33/47 (70%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVT 385 K+FVG L ++ SEGL + FEQ G + A VI +R T +S+G+GFVT Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVT 183
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 48.5 bits (114), Expect = 8e-06 Identities = 19/47 (40%), Positives = 32/47 (68%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVT 385 +++VG + W+ L Q F ++G ++ A V+ DR +GRS+G+GFVT Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVT 238 Score = 48.5 bits (114), Expect = 8e-06 Identities = 25/47 (53%), Positives = 33/47 (70%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVT 385 K+FVG L ++ SEGL Q F+Q G + A VI +R T RS+G+GFVT Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVT 144
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 48.5 bits (114), Expect = 8e-06 Identities = 23/56 (41%), Positives = 33/56 (58%) Frame = +2 Query: 221 RFGDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++G ++FVGG++ +T L + F YG + +I DR G SKGYGFVTF Sbjct: 26 KYGTLIPNRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDR-AGVSKGYGFVTF 80
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 48.1 bits (113), Expect = 1e-05 Identities = 23/47 (48%), Positives = 32/47 (68%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 VFVG L+ E +E ++ F +G I +A V+ D TG+SKGYGFV+F Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 154 Score = 32.3 bits (72), Expect = 0.63 Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXDP 427 V+ GG+ + +RQ F +G I+E V D KGY FV F Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFSSHESAAHAIVSV 269 Query: 428 N-PTITGRRANC 460 N TI G C Sbjct: 270 NGTTIEGHVVKC 281
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 48.1 bits (113), Expect = 1e-05 Identities = 23/62 (37%), Positives = 34/62 (54%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXD 424 K+F+GGL ET + L F +YG I+E +++ DR T +S+G+ FVT D Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARD 68 Query: 425 PN 430 N Sbjct: 69 MN 70
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 47.8 bits (112), Expect = 1e-05 Identities = 25/54 (46%), Positives = 31/54 (57%) Frame = +2 Query: 227 GDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 G VFVGG+ +R F +YG + E +ITDR TG SKGYGFV+F Sbjct: 35 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSF 87
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 47.8 bits (112), Expect = 1e-05 Identities = 25/54 (46%), Positives = 31/54 (57%) Frame = +2 Query: 227 GDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 G VFVGG+ +R F +YG + E +ITDR TG SKGYGFV+F Sbjct: 35 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSF 87
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 47.8 bits (112), Expect = 1e-05 Identities = 25/54 (46%), Positives = 31/54 (57%) Frame = +2 Query: 227 GDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 G VFVGG+ +R F +YG + E +ITDR TG SKGYGFV+F Sbjct: 35 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSF 87
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 47.0 bits (110), Expect = 2e-05 Identities = 25/54 (46%), Positives = 31/54 (57%) Frame = +2 Query: 227 GDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 G VFVGG+ +R F +YG + E +ITDR TG SKGYGFV+F Sbjct: 35 GKIMPNTVFVGGIDVRMDETEIRGFFARYGSVKEVKIITDR-TGVSKGYGFVSF 87
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 47.0 bits (110), Expect = 2e-05 Identities = 22/47 (46%), Positives = 32/47 (68%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 VFVG L+ + +E ++ F +G I +A V+ D TG+SKGYGFV+F Sbjct: 108 VFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 154 Score = 32.0 bits (71), Expect = 0.82 Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXDP 427 V+ GG+ + +RQ F +G I+E V D KGY FV F Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSV 269 Query: 428 N-PTITGRRANC 460 N TI G C Sbjct: 270 NGTTIEGHVVKC 281
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 46.2 bits (108), Expect = 4e-05 Identities = 23/54 (42%), Positives = 33/54 (61%) Frame = +2 Query: 227 GDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 G+ +++VG L + + LR FE +G I V++ D TGRSKGYGF+TF Sbjct: 258 GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITF 311 Score = 28.5 bits (62), Expect = 9.1 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 VF LA L F G + + +I+DR + RSKG +V F Sbjct: 168 VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEF 214
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 45.1 bits (105), Expect = 9e-05 Identities = 25/107 (23%), Positives = 41/107 (38%) Frame = +2 Query: 131 FLVASTRSKAGGRGGVMXXXXXXXXXXXXXRFGDTTQTKVFVGGLAWETPSEGLRQHFEQ 310 F S ++A R G + VFVG L ++ + +HF Sbjct: 250 FKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAIEKHFLD 309 Query: 311 YGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXDPNPTITGRR 451 G I+ ++ D++TG KG+G+V F N + GR+ Sbjct: 310 CGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRK 356
>DAZ1_CAEEL (Q20870) DAZ protein 1| Length = 499 Score = 44.7 bits (104), Expect = 1e-04 Identities = 20/48 (41%), Positives = 31/48 (64%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++FVGG T LR+HFE++ + + ++ L G+SKGYGF+TF Sbjct: 68 RIFVGGFPTSTTETELREHFEKFFAVKDVKMVKS-LDGQSKGYGFITF 114
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 44.7 bits (104), Expect = 1e-04 Identities = 22/54 (40%), Positives = 31/54 (57%) Frame = +2 Query: 227 GDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 G +++VG L + + LR FE +G I ++ D TGRSKGYGF+TF Sbjct: 245 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITF 298
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 44.7 bits (104), Expect = 1e-04 Identities = 22/54 (40%), Positives = 31/54 (57%) Frame = +2 Query: 227 GDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 G +++VG L + + LR FE +G I ++ D TGRSKGYGF+TF Sbjct: 245 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITF 298 Score = 28.5 bits (62), Expect = 9.1 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 VF LA L + F G + + +I+DR + RSKG +V F Sbjct: 155 VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEF 201
>HNRU2_HUMAN (P07029) Heterogeneous nuclear ribonucleoprotein UP2 (Fragment)| Length = 225 Score = 44.7 bits (104), Expect = 1e-04 Identities = 18/48 (37%), Positives = 32/48 (66%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+FVGGL+ +TP E +R++F +G++ + D T + +G+ F+TF Sbjct: 173 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 220
>HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP| core protein C) (Fragment) Length = 158 Score = 44.7 bits (104), Expect = 1e-04 Identities = 18/48 (37%), Positives = 32/48 (66%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 K+FVGGL+ +TP E +R++F +G++ + D T + +G+ F+TF Sbjct: 35 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 82
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 44.3 bits (103), Expect = 2e-04 Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 1/57 (1%) Frame = +2 Query: 221 RFGDTTQTK-VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 R G Q+K +FV GL+ +T E LR+ FE + A ++TDR TG SKG+GFV F Sbjct: 545 RGGFNQQSKTLFVRGLSEDTTEETLRESFE---GSISARIVTDRDTGSSKGFGFVDF 598
>RNP24_SCHPO (Q09100) RNA-binding protein rnp24| Length = 369 Score = 44.3 bits (103), Expect = 2e-04 Identities = 21/47 (44%), Positives = 29/47 (61%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +FVG L +ET L++HF Q G I ++T TG+ KG+GFV F Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 43.9 bits (102), Expect = 2e-04 Identities = 19/52 (36%), Positives = 33/52 (63%) Frame = +2 Query: 233 TTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++ K+FVG + E +R +FEQ+G++LE +I D+ TG+ +G FV + Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKY 168 Score = 33.1 bits (74), Expect = 0.37 Identities = 20/75 (26%), Positives = 34/75 (45%) Frame = +2 Query: 233 TTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXX 412 T + K+FVG L + + + + F Q+G + + ++ D +S+G GFV + Sbjct: 208 TLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMA 266 Query: 413 XXXDPNPTITGRRAN 457 N T T R N Sbjct: 267 AIDGLNGTYTMRGCN 281
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 43.5 bits (101), Expect = 3e-04 Identities = 23/62 (37%), Positives = 35/62 (56%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXD 424 K+F+GGL ET + L+ F ++G I E ++I DR T +S+G+ F+TF D Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKD 67 Query: 425 PN 430 N Sbjct: 68 MN 69
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 43.5 bits (101), Expect = 3e-04 Identities = 24/52 (46%), Positives = 31/52 (59%) Frame = +2 Query: 233 TTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T T V+V LA T + L+ F +YG I AVV+ D G+SKG+GFV F Sbjct: 212 TKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNF 262 Score = 35.4 bits (80), Expect = 0.074 Identities = 20/56 (35%), Positives = 30/56 (53%) Frame = +2 Query: 221 RFGDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +FG+T+ ++VG L + L F Q G ++ V D +T RS GYG+V F Sbjct: 32 QFGNTS---LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNF 84 Score = 32.3 bits (72), Expect = 0.63 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +F+ L + L F +G+I+ V D +G+SKGYGFV + Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQY 171
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 427 Score = 43.5 bits (101), Expect = 3e-04 Identities = 20/54 (37%), Positives = 33/54 (61%) Frame = +2 Query: 227 GDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 GD +T +FV L +E+ +++ FE YG I ++TD+LT + KGY F+ + Sbjct: 134 GDPYKT-LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEY 186
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 43.5 bits (101), Expect = 3e-04 Identities = 19/53 (35%), Positives = 30/53 (56%) Frame = +2 Query: 230 DTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 D + VFVG + +E E L+ F + G ++ ++ DR TG+ KGYGF + Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEY 64
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 43.5 bits (101), Expect = 3e-04 Identities = 19/53 (35%), Positives = 30/53 (56%) Frame = +2 Query: 230 DTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 D + VFVG + +E E L+ F + G ++ ++ DR TG+ KGYGF + Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEY 64
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 43.1 bits (100), Expect = 4e-04 Identities = 19/53 (35%), Positives = 30/53 (56%) Frame = +2 Query: 230 DTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 D + VFVG + +E E L+ F + G ++ ++ DR TG+ KGYGF + Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY 64
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 43.1 bits (100), Expect = 4e-04 Identities = 19/53 (35%), Positives = 30/53 (56%) Frame = +2 Query: 230 DTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 D + VFVG + +E E L+ F + G ++ ++ DR TG+ KGYGF + Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY 64
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 43.1 bits (100), Expect = 4e-04 Identities = 19/53 (35%), Positives = 30/53 (56%) Frame = +2 Query: 230 DTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 D + VFVG + +E E L+ F + G ++ ++ DR TG+ KGYGF + Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY 64
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 43.1 bits (100), Expect = 4e-04 Identities = 19/53 (35%), Positives = 30/53 (56%) Frame = +2 Query: 230 DTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 D + VFVG + +E E L+ F + G ++ ++ DR TG+ KGYGF + Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY 64
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 42.7 bits (99), Expect = 5e-04 Identities = 19/49 (38%), Positives = 32/49 (65%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T + + L+++T LR+ FE+YGDI + + D+ + +SKG+GFV F Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRF 67
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 42.7 bits (99), Expect = 5e-04 Identities = 25/103 (24%), Positives = 39/103 (37%) Frame = +2 Query: 143 STRSKAGGRGGVMXXXXXXXXXXXXXRFGDTTQTKVFVGGLAWETPSEGLRQHFEQYGDI 322 S +KA R G + VFVG L ++ L +HF G I Sbjct: 258 SAAAKALQRNGAQIAEGFRIRVDLASETASRDKRSVFVGNLPYKIEDSALEEHFLDCGSI 317 Query: 323 LEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXDPNPTITGRR 451 + ++ + LTG +G+G+V F N + GR+ Sbjct: 318 VAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRK 360
>DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3| Length = 486 Score = 42.4 bits (98), Expect = 6e-04 Identities = 23/54 (42%), Positives = 30/54 (55%) Frame = +2 Query: 227 GDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 G VFVGG+ + F +YG + E +IT+R TG SKGYGFV+F Sbjct: 35 GKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSF 87
>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1| Length = 744 Score = 42.4 bits (98), Expect = 6e-04 Identities = 23/54 (42%), Positives = 30/54 (55%) Frame = +2 Query: 227 GDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 G VFVGG+ + F +YG + E +IT+R TG SKGYGFV+F Sbjct: 365 GKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSF 417 Score = 42.4 bits (98), Expect = 6e-04 Identities = 23/54 (42%), Positives = 30/54 (55%) Frame = +2 Query: 227 GDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 G VFVGG+ + F +YG + E +IT+R TG SKGYGFV+F Sbjct: 200 GKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSF 252 Score = 42.4 bits (98), Expect = 6e-04 Identities = 23/54 (42%), Positives = 30/54 (55%) Frame = +2 Query: 227 GDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 G VFVGG+ + F +YG + E +IT+R TG SKGYGFV+F Sbjct: 35 GKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSF 87
>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2| Length = 558 Score = 42.4 bits (98), Expect = 6e-04 Identities = 23/54 (42%), Positives = 30/54 (55%) Frame = +2 Query: 227 GDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 G VFVGG+ + F +YG + E +IT+R TG SKGYGFV+F Sbjct: 35 GKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSF 87
>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4| Length = 579 Score = 42.4 bits (98), Expect = 6e-04 Identities = 23/54 (42%), Positives = 30/54 (55%) Frame = +2 Query: 227 GDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 G VFVGG+ + F +YG + E +IT+R TG SKGYGFV+F Sbjct: 200 GKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSF 252 Score = 42.4 bits (98), Expect = 6e-04 Identities = 23/54 (42%), Positives = 30/54 (55%) Frame = +2 Query: 227 GDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 G VFVGG+ + F +YG + E +IT+R TG SKGYGFV+F Sbjct: 35 GKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSF 87
>DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protein) (zDazl)| Length = 229 Score = 42.4 bits (98), Expect = 6e-04 Identities = 22/54 (40%), Positives = 30/54 (55%) Frame = +2 Query: 227 GDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 G T +FVGG+ + +R+ F +YG + E +IT R G KGYGFV F Sbjct: 42 GKMTPNTLFVGGIDMKVDENEIREFFAKYGSVKEVKIITYR-GGICKGYGFVYF 94
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 42.0 bits (97), Expect = 8e-04 Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%) Frame = +2 Query: 227 GDTTQTK-VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 G + Q+K +FV GL+ +T E L++ F+ + A ++TDR TG SKG+GFV F Sbjct: 496 GGSAQSKTLFVRGLSEDTTEETLKEAFD---GSVNARIVTDRDTGASKGFGFVDF 547
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 42.0 bits (97), Expect = 8e-04 Identities = 22/47 (46%), Positives = 31/47 (65%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +FV GL+ +T E L++ FE + A ++TDR TG SKG+GFV F Sbjct: 576 LFVKGLSEDTTEETLKESFE---GSVRARIVTDRETGSSKGFGFVDF 619
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 42.0 bits (97), Expect = 8e-04 Identities = 22/47 (46%), Positives = 31/47 (65%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +FV GL+ +T E L++ FE + A ++TDR TG SKG+GFV F Sbjct: 573 LFVKGLSEDTTEETLKESFE---GSVRARIVTDRETGSSKGFGFVDF 616
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 42.0 bits (97), Expect = 8e-04 Identities = 18/33 (54%), Positives = 24/33 (72%) Frame = +2 Query: 290 LRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 L F YG++LE+ +I DR T RS+G+GFVTF Sbjct: 3 LHSAFSTYGEVLESKIILDRETQRSRGFGFVTF 35
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 42.0 bits (97), Expect = 8e-04 Identities = 22/47 (46%), Positives = 31/47 (65%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +FV GL+ +T E L++ FE + A ++TDR TG SKG+GFV F Sbjct: 570 LFVKGLSEDTTEETLKESFE---GSVRARIVTDRETGSSKGFGFVDF 613
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 41.6 bits (96), Expect = 0.001 Identities = 24/100 (24%), Positives = 37/100 (37%) Frame = +2 Query: 152 SKAGGRGGVMXXXXXXXXXXXXXRFGDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEA 331 +KA R G + VFVG L + L +HF G I+ Sbjct: 255 AKALQRNGAQIAEGFRIRVDLASETASRDKRSVFVGNLPYRVDESALEEHFLDCGSIVAV 314 Query: 332 VVITDRLTGRSKGYGFVTFXXXXXXXXXXXDPNPTITGRR 451 ++ + LTG +G+G+V F N + GR+ Sbjct: 315 RIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRK 354
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 41.6 bits (96), Expect = 0.001 Identities = 18/47 (38%), Positives = 30/47 (63%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +FVGGL +E + F QYG+I+ ++ D+ TG+SKG+ F+ + Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCY 84
>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog| Length = 300 Score = 41.2 bits (95), Expect = 0.001 Identities = 15/47 (31%), Positives = 32/47 (68%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +F+G L ++ L+++F ++G+I + ++ D++T +SKGY F+ F Sbjct: 109 IFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVF 155
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 41.2 bits (95), Expect = 0.001 Identities = 17/47 (36%), Positives = 26/47 (55%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +FVG + + E + HF+ G I ++ DR TG KGYG++ F Sbjct: 66 IFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEF 112
>NOP12_KLULA (Q6CKV6) Nucleolar protein 12| Length = 524 Score = 41.2 bits (95), Expect = 0.001 Identities = 21/47 (44%), Positives = 26/47 (55%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 VFVG L +E E L +HFE GDI +I D T KG+ +V F Sbjct: 361 VFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQF 407
>RU17_DROME (P17133) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) Length = 448 Score = 40.8 bits (94), Expect = 0.002 Identities = 17/47 (36%), Positives = 30/47 (63%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +F+ + ++T LR+ FE YG I + V+I D+ +G+ KGY F+ + Sbjct: 104 LFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEY 150
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/47 (44%), Positives = 31/47 (65%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +FV GL+ +T E L++ F+ + A ++TDR TG SKG+GFV F Sbjct: 575 LFVKGLSEDTTEETLKESFD---GSVRARIVTDRETGSSKGFGFVDF 618
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/47 (44%), Positives = 31/47 (65%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +FV GL+ +T E L++ F+ + A ++TDR TG SKG+GFV F Sbjct: 574 LFVKGLSEDTTEETLKESFD---GSVRARIVTDRETGSSKGFGFVDF 617
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 40.8 bits (94), Expect = 0.002 Identities = 20/47 (42%), Positives = 28/47 (59%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 VFV LA S L FEQ G + +A ++ D+++GRSKG +V F Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF 288
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/47 (44%), Positives = 31/47 (65%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +FV GL+ +T E L++ F+ + A ++TDR TG SKG+GFV F Sbjct: 573 LFVKGLSEDTTEETLKESFD---GSVRARIVTDRETGSSKGFGFVDF 616
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 40.8 bits (94), Expect = 0.002 Identities = 17/47 (36%), Positives = 31/47 (65%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +FVG L+++ + LR+HF+ GDI++ + T +G+ KG+ F+ F Sbjct: 241 LFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDF 287
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 40.4 bits (93), Expect = 0.002 Identities = 17/47 (36%), Positives = 30/47 (63%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +F+GGL +E + F QYG+I+ ++ D+ TG+SKG+ F+ + Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCY 84
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 40.4 bits (93), Expect = 0.002 Identities = 18/47 (38%), Positives = 29/47 (61%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++V GL + L Q F QYG I+ + ++ D++TG S+G GF+ F Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173 Score = 37.0 bits (84), Expect = 0.025 Identities = 17/53 (32%), Positives = 29/53 (54%) Frame = +2 Query: 230 DTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 + ++T + V L E L+ F G+I ++ D++TG+S GYGFV + Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87 Score = 32.7 bits (73), Expect = 0.48 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVT 385 +FV LA + L Q F +G + VI D T + KG+GFVT Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 324
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 40.4 bits (93), Expect = 0.002 Identities = 21/49 (42%), Positives = 31/49 (63%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T V+V L E + L++ F +YGDI AVV+ D+ +G S+ +GFV F Sbjct: 225 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNF 272 Score = 36.6 bits (83), Expect = 0.033 Identities = 20/47 (42%), Positives = 26/47 (55%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 VF+ L ++ L + F +G IL V D + GRSKGYGFV F Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQF 179 Score = 32.0 bits (71), Expect = 0.82 Identities = 18/77 (23%), Positives = 35/77 (45%) Frame = +2 Query: 221 RFGDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXX 400 RF + +++ L E L++ F +YG++ V+ + G S+G+GFV + Sbjct: 321 RFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNS-QGLSRGFGFVAYSNPE 379 Query: 401 XXXXXXXDPNPTITGRR 451 + N + GR+ Sbjct: 380 EALLAMKEMNGKMIGRK 396
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 40.4 bits (93), Expect = 0.002 Identities = 17/45 (37%), Positives = 27/45 (60%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFV 382 ++VG L+++ L F +YG + + TDR TGR +G+GFV Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFV 47
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 40.4 bits (93), Expect = 0.002 Identities = 18/47 (38%), Positives = 29/47 (61%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++V GL + L Q F QYG I+ + ++ D++TG S+G GF+ F Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173 Score = 34.3 bits (77), Expect = 0.16 Identities = 16/53 (30%), Positives = 28/53 (52%) Frame = +2 Query: 230 DTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 + ++T + L E L+ F G+I ++ D++TG+S GYGFV + Sbjct: 35 EDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87 Score = 32.7 bits (73), Expect = 0.48 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVT 385 +FV LA + L Q F +G + VI D T + KG+GFVT Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 323
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 40.4 bits (93), Expect = 0.002 Identities = 18/47 (38%), Positives = 29/47 (61%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++V GL + L Q F QYG I+ + ++ D++TG S+G GF+ F Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173 Score = 37.0 bits (84), Expect = 0.025 Identities = 17/53 (32%), Positives = 29/53 (54%) Frame = +2 Query: 230 DTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 + ++T + V L E L+ F G+I ++ D++TG+S GYGFV + Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87 Score = 32.7 bits (73), Expect = 0.48 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVT 385 +FV LA + L Q F +G + VI D T + KG+GFVT Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 323
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 40.4 bits (93), Expect = 0.002 Identities = 18/47 (38%), Positives = 29/47 (61%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++V GL + L Q F QYG I+ + ++ D++TG S+G GF+ F Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173 Score = 37.0 bits (84), Expect = 0.025 Identities = 17/53 (32%), Positives = 29/53 (54%) Frame = +2 Query: 230 DTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 + ++T + V L E L+ F G+I ++ D++TG+S GYGFV + Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87 Score = 32.7 bits (73), Expect = 0.48 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVT 385 +FV LA + L Q F +G + VI D T + KG+GFVT Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 323
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 40.4 bits (93), Expect = 0.002 Identities = 18/47 (38%), Positives = 29/47 (61%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++V GL + L Q F QYG I+ + ++ D++TG S+G GF+ F Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 180 Score = 38.1 bits (87), Expect = 0.011 Identities = 18/53 (33%), Positives = 28/53 (52%) Frame = +2 Query: 230 DTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 D ++T + V L E R F G+I ++ D++TG+S GYGFV + Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 94 Score = 31.2 bits (69), Expect = 1.4 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVT 385 +FV L+ ++ L Q F +G + VI D T + KG+GFVT Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVT 344
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 40.4 bits (93), Expect = 0.002 Identities = 18/47 (38%), Positives = 29/47 (61%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++V GL + L Q F QYG I+ + ++ D++TG S+G GF+ F Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173 Score = 38.1 bits (87), Expect = 0.011 Identities = 18/53 (33%), Positives = 28/53 (52%) Frame = +2 Query: 230 DTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 D ++T + V L E R F G+I ++ D++TG+S GYGFV + Sbjct: 35 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87 Score = 31.2 bits (69), Expect = 1.4 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVT 385 +FV L+ ++ L Q F +G + VI D T + KG+GFVT Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVT 337
>NOP12_YEAST (Q08208) Nucleolar protein 12| Length = 459 Score = 40.4 bits (93), Expect = 0.002 Identities = 20/47 (42%), Positives = 26/47 (55%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +FVG L +E E L +HFE GDI +I D T KG+ +V F Sbjct: 281 IFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQF 327
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 40.4 bits (93), Expect = 0.002 Identities = 30/108 (27%), Positives = 47/108 (43%) Frame = +2 Query: 65 QFNRARNLVHRGLARSPSTEASFLVASTRSKAGGRGGVMXXXXXXXXXXXXXRFGDTTQT 244 ++ R+R+ HR +RS S + +RS + R T Sbjct: 67 RYTRSRSHSHRRRSRSRSYTPEYRRRRSRSHSP---------MSNRRRHTGSRANPDPNT 117 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 + V GL+ T LR+ F +YG + V+ D+ TGRS+G+ FV F Sbjct: 118 CLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYF 165
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 40.4 bits (93), Expect = 0.002 Identities = 18/47 (38%), Positives = 29/47 (61%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++V GL + L Q F QYG I+ + ++ D++TG S+G GF+ F Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 185 Score = 38.1 bits (87), Expect = 0.011 Identities = 18/53 (33%), Positives = 28/53 (52%) Frame = +2 Query: 230 DTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 D ++T + V L E R F G+I ++ D++TG+S GYGFV + Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 99 Score = 31.2 bits (69), Expect = 1.4 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVT 385 +FV L+ ++ L Q F +G + VI D T + KG+GFVT Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVT 349
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 39.7 bits (91), Expect = 0.004 Identities = 23/68 (33%), Positives = 31/68 (45%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXDP 427 ++VG L L+ +FEQ+G +L V + TG SKGYGFV F Sbjct: 47 LYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAETM 106 Query: 428 NPTITGRR 451 N + G R Sbjct: 107 NNYLMGER 114
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 39.7 bits (91), Expect = 0.004 Identities = 17/47 (36%), Positives = 29/47 (61%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++V GL + + Q F QYG I+ + ++ D++TG S+G GF+ F Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173 Score = 37.4 bits (85), Expect = 0.019 Identities = 17/53 (32%), Positives = 28/53 (52%) Frame = +2 Query: 230 DTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 D ++T + V L + + F GDI ++ D++TG+S GYGFV + Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNY 87 Score = 33.5 bits (75), Expect = 0.28 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVT 385 +FV L+ E L Q F +G + VI D T + KG+GFVT Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVT 331
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 39.7 bits (91), Expect = 0.004 Identities = 17/48 (35%), Positives = 28/48 (58%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++F+ +++E E R F QYG + E + D TG+SKG+ +V F Sbjct: 311 RLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQF 358
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 39.7 bits (91), Expect = 0.004 Identities = 17/47 (36%), Positives = 27/47 (57%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 VFV + ++ E L HF ++G + A+ + D+ TG +KG FV F Sbjct: 292 VFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAF 338 Score = 32.3 bits (72), Expect = 0.63 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +FV + + E L F + I AVV+ D RS+G+GFV+F Sbjct: 28 LFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDT-NKRSRGFGFVSF 73
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 39.3 bits (90), Expect = 0.005 Identities = 18/51 (35%), Positives = 29/51 (56%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++T +++ GL T + L + + YG I+ I D+ T + KGYGFV F Sbjct: 60 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDF 110
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 39.3 bits (90), Expect = 0.005 Identities = 20/47 (42%), Positives = 26/47 (55%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +FVG L E LR F+ + L V+ D TG S+GYGFV+F Sbjct: 163 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSF 209
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 39.3 bits (90), Expect = 0.005 Identities = 18/51 (35%), Positives = 29/51 (56%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++T +++ GL T + L + + YG I+ I D+ T + KGYGFV F Sbjct: 60 SKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDF 110
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 38.9 bits (89), Expect = 0.007 Identities = 16/48 (33%), Positives = 28/48 (58%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++F+ + ++ E +Q F YG++ E V D TG+SKG+ +V F Sbjct: 302 RLFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLF 349
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 38.9 bits (89), Expect = 0.007 Identities = 23/68 (33%), Positives = 32/68 (47%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXDP 427 ++V L + LR F YG+I A V+TD GRSKG+GFV F + Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDE-EGRSKGFGFVCFNAASEATCAVTEL 347 Query: 428 NPTITGRR 451 N + G + Sbjct: 348 NGRVVGSK 355 Score = 35.8 bits (81), Expect = 0.057 Identities = 19/49 (38%), Positives = 27/49 (55%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T V+V + E L++ FE YG I V++ G+SKG+GFV F Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKE-DGKSKGFGFVAF 230 Score = 34.3 bits (77), Expect = 0.16 Identities = 19/47 (40%), Positives = 25/47 (53%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 VF+ L ++ + F +G+IL V TD G SKGYGFV F Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDE-KGNSKGYGFVHF 137 Score = 33.5 bits (75), Expect = 0.28 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++VG L + GL F G +L V D +T RS GY +V F Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNF 50
>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1| Length = 476 Score = 38.5 bits (88), Expect = 0.009 Identities = 21/53 (39%), Positives = 31/53 (58%) Frame = +2 Query: 230 DTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 D T++FV + E LR+ F+ YGDI VI +++TG SKG G+V + Sbjct: 117 DEELTRIFVM-IPKSYTEEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYVRY 168 Score = 36.6 bits (83), Expect = 0.033 Identities = 17/38 (44%), Positives = 22/38 (57%) Frame = +2 Query: 275 TPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T LR+HF +GDI + V+ D+ T SKG FV F Sbjct: 36 TSESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKF 73
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 38.5 bits (88), Expect = 0.009 Identities = 19/45 (42%), Positives = 27/45 (60%) Frame = +2 Query: 254 VGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 V GL+ T LR+ F +YG + V+ D+ TGRS+G+ FV F Sbjct: 123 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYF 167
>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (Poly(A)-binding protein II) (PABII) Length = 166 Score = 38.5 bits (88), Expect = 0.009 Identities = 14/47 (29%), Positives = 25/47 (53%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 V+VG + + E L+ HF G + ++ D+ TG KG+ ++ F Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEF 103
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 38.5 bits (88), Expect = 0.009 Identities = 17/47 (36%), Positives = 28/47 (59%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++V GL + + Q F QYG I+ + ++ D+ TG S+G GF+ F Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRF 173 Score = 37.4 bits (85), Expect = 0.019 Identities = 17/53 (32%), Positives = 28/53 (52%) Frame = +2 Query: 230 DTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 D ++T + V L + + F GDI ++ D++TG+S GYGFV + Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNY 87 Score = 33.5 bits (75), Expect = 0.28 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVT 385 +FV L+ E L Q F +G + VI D T + KG+GFVT Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVT 331
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 38.5 bits (88), Expect = 0.009 Identities = 18/51 (35%), Positives = 29/51 (56%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++T +++ GL T + L + + YG I+ I D+ T + KGYGFV F Sbjct: 54 SKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDF 104
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 38.5 bits (88), Expect = 0.009 Identities = 18/51 (35%), Positives = 29/51 (56%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++T +++ GL T + L + + YG I+ I D+ T + KGYGFV F Sbjct: 56 SKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDF 106
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 38.1 bits (87), Expect = 0.011 Identities = 18/49 (36%), Positives = 28/49 (57%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T + V L + T + LR+ FE+YG + + + DR T S+G+ FV F Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRF 62
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 38.1 bits (87), Expect = 0.011 Identities = 18/47 (38%), Positives = 26/47 (55%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +FVGG+A L F +YG IL +I D+ G GYGF+++ Sbjct: 197 IFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISY 243
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 38.1 bits (87), Expect = 0.011 Identities = 18/49 (36%), Positives = 28/49 (57%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T + V L + T + LR+ FE+YG + + + DR T S+G+ FV F Sbjct: 13 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRF 61
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 38.1 bits (87), Expect = 0.011 Identities = 18/49 (36%), Positives = 28/49 (57%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T + V L + T + LR+ FE+YG + + + DR T S+G+ FV F Sbjct: 13 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRF 61
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 38.1 bits (87), Expect = 0.011 Identities = 18/49 (36%), Positives = 28/49 (57%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T + V L + T + LR+ FE+YG + + + DR T S+G+ FV F Sbjct: 13 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRF 61
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 38.1 bits (87), Expect = 0.011 Identities = 18/49 (36%), Positives = 28/49 (57%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T + V L + T + LR+ FE+YG + + + DR T S+G+ FV F Sbjct: 13 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRF 61
>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 38.1 bits (87), Expect = 0.011 Identities = 20/53 (37%), Positives = 31/53 (58%) Frame = +2 Query: 230 DTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 D T++FV + E LR+ F+ YGDI +I +++TG SKG G+V + Sbjct: 117 DEELTRIFVM-IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRY 168 Score = 33.1 bits (74), Expect = 0.37 Identities = 15/33 (45%), Positives = 20/33 (60%) Frame = +2 Query: 290 LRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 LR+ F +GDI + V+ D+ T SKG FV F Sbjct: 41 LRERFSPFGDIQDIWVVRDKHTKESKGVAFVKF 73
>DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 38.1 bits (87), Expect = 0.011 Identities = 20/53 (37%), Positives = 31/53 (58%) Frame = +2 Query: 230 DTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 D T++FV + E LR+ F+ YGDI +I +++TG SKG G+V + Sbjct: 117 DEELTRIFVM-IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRY 168 Score = 36.6 bits (83), Expect = 0.033 Identities = 17/38 (44%), Positives = 22/38 (57%) Frame = +2 Query: 275 TPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 TP LR+ F +GDI + V+ D+ T SKG FV F Sbjct: 36 TPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKF 73
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 38.1 bits (87), Expect = 0.011 Identities = 21/63 (33%), Positives = 31/63 (49%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXX 421 T V++ + E L++ F QYG L V+TD G+S+G+GFV+F Sbjct: 191 TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD-HGKSRGFGFVSFERHEDAQKAVD 249 Query: 422 DPN 430 D N Sbjct: 250 DMN 252 Score = 33.1 bits (74), Expect = 0.37 Identities = 19/56 (33%), Positives = 26/56 (46%) Frame = +2 Query: 284 EGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXDPNPTITGRR 451 E LR+ F +G I A V+ + GRSKG+GFV F + N I + Sbjct: 308 ERLRKEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361 Score = 31.2 bits (69), Expect = 1.4 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +F+ L ++ L F +G+IL V+ D SKGYGFV F Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHF 145 Score = 30.8 bits (68), Expect = 1.8 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++VG L + L + F G IL V D +T RS GY +V F Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNF 59
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 37.7 bits (86), Expect = 0.015 Identities = 18/49 (36%), Positives = 28/49 (57%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T V++ E E L++ F Q+G L V+ D G+SKG+GFV++ Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSY 238 Score = 36.2 bits (82), Expect = 0.043 Identities = 20/56 (35%), Positives = 27/56 (48%) Frame = +2 Query: 284 EGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXDPNPTITGRR 451 E LR+ F +G I A V+ + GRSKG+GFV F + N I G + Sbjct: 308 EKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 361 Score = 30.8 bits (68), Expect = 1.8 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++VG L + L + F G +L V D +T RS GY +V F Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNF 59
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 37.7 bits (86), Expect = 0.015 Identities = 18/49 (36%), Positives = 30/49 (61%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T V++ + E L++ F ++G L V+TD +G+SKG+GFV+F Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSF 238 Score = 33.1 bits (74), Expect = 0.37 Identities = 19/56 (33%), Positives = 26/56 (46%) Frame = +2 Query: 284 EGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXDPNPTITGRR 451 E LR+ F +G I A V+ + GRSKG+GFV F + N I + Sbjct: 308 ERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361 Score = 31.2 bits (69), Expect = 1.4 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +F+ L ++ L F +G+IL V+ D SKGYGFV F Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHF 145 Score = 30.8 bits (68), Expect = 1.8 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++VG L + L + F G IL V D +T RS GY +V F Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNF 59
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 37.7 bits (86), Expect = 0.015 Identities = 18/49 (36%), Positives = 30/49 (61%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T V++ + E L++ F ++G L V+TD +G+SKG+GFV+F Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSF 238 Score = 33.1 bits (74), Expect = 0.37 Identities = 19/56 (33%), Positives = 26/56 (46%) Frame = +2 Query: 284 EGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXDPNPTITGRR 451 E LR+ F +G I A V+ + GRSKG+GFV F + N I + Sbjct: 308 ERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361 Score = 31.2 bits (69), Expect = 1.4 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +F+ L ++ L F +G+IL V+ D SKGYGFV F Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHF 145 Score = 30.8 bits (68), Expect = 1.8 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++VG L + L + F G IL V D +T RS GY +V F Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNF 59
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 37.7 bits (86), Expect = 0.015 Identities = 19/49 (38%), Positives = 29/49 (59%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T V++ + E L++ F +YG L V+TD G+SKG+GFV+F Sbjct: 191 TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSF 238 Score = 32.0 bits (71), Expect = 0.82 Identities = 19/56 (33%), Positives = 26/56 (46%) Frame = +2 Query: 284 EGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXDPNPTITGRR 451 E LR+ F +G I A V+ + GRSKG+GFV F + N I + Sbjct: 308 ERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361 Score = 31.6 bits (70), Expect = 1.1 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++VG L + L + F G IL V D +T RS GY +V F Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNF 59 Score = 31.2 bits (69), Expect = 1.4 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +F+ L ++ L F +G+IL V+ D SKGYGFV F Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHF 145
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 37.7 bits (86), Expect = 0.015 Identities = 20/47 (42%), Positives = 27/47 (57%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +F+ L ++ L + F +G IL V D +TGRSKGYGFV F Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQF 183 Score = 33.5 bits (75), Expect = 0.28 Identities = 18/77 (23%), Positives = 36/77 (46%) Frame = +2 Query: 221 RFGDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXX 400 RF + +++ L E L++ F +YG++ + V+ + G S+G+GFV + Sbjct: 325 RFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPE 383 Query: 401 XXXXXXXDPNPTITGRR 451 + N + GR+ Sbjct: 384 EALRALSEMNGKMIGRK 400
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 37.4 bits (85), Expect = 0.019 Identities = 19/52 (36%), Positives = 29/52 (55%) Frame = +2 Query: 233 TTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 TT+ ++VGGLA E + L F +GDI + + D T + +G+ FV F Sbjct: 3 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEF 54
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 37.4 bits (85), Expect = 0.019 Identities = 19/52 (36%), Positives = 29/52 (55%) Frame = +2 Query: 233 TTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 TT+ ++VGGLA E + L F +GDI + + D T + +G+ FV F Sbjct: 3 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEF 54
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 37.4 bits (85), Expect = 0.019 Identities = 19/49 (38%), Positives = 30/49 (61%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T++FVG + + + L FE+ G I + ++ D LTG ++GY FVTF Sbjct: 72 TEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTF 120
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 37.4 bits (85), Expect = 0.019 Identities = 19/49 (38%), Positives = 30/49 (61%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T++FVG + + + L FE+ G I + ++ D LTG ++GY FVTF Sbjct: 162 TEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTF 210
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 37.4 bits (85), Expect = 0.019 Identities = 19/49 (38%), Positives = 30/49 (61%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T++FVG + + + L FE+ G I + ++ D LTG ++GY FVTF Sbjct: 162 TEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTF 210
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 37.4 bits (85), Expect = 0.019 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 2/55 (3%) Frame = +2 Query: 230 DTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTG--RSKGYGFVTF 388 D K+FVG + + LR+ FEQYG + E V+ DR +SKG FVTF Sbjct: 12 DLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTF 66
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 37.4 bits (85), Expect = 0.019 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHF-EQYGDILEAVVITDRLTGRSKGYGFVTF 388 +FVG LA L + F +Y A ++ D++TG SKGYGFV F Sbjct: 165 IFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKF 212 Score = 30.4 bits (67), Expect = 2.4 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = +2 Query: 224 FGDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTG 358 F D T VF+GGL+ + LR +F+ +G I+ + + G Sbjct: 307 FTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCG 351
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 37.4 bits (85), Expect = 0.019 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 4/85 (4%) Frame = +2 Query: 146 TRSKAGGRGGVMXXXXXXXXXXXXXRFGDTT----QTKVFVGGLAWETPSEGLRQHFEQY 313 +RS GGRGG R D T + +FV L ++ E L++ F Sbjct: 86 SRSFRGGRGGGRGRTLGPIVERDLERQFDATKRNFENSIFVRNLTFDCTPEDLKELFGTV 145 Query: 314 GDILEAVVITDRLTGRSKGYGFVTF 388 G+++EA +IT + G +G G V F Sbjct: 146 GEVVEADIITSK--GHHRGMGTVEF 168
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 37.4 bits (85), Expect = 0.019 Identities = 18/49 (36%), Positives = 31/49 (63%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T+VFVG + + + L FE+ G I + ++ D L+G+++GY F+TF Sbjct: 165 TEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITF 213
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 37.4 bits (85), Expect = 0.019 Identities = 17/49 (34%), Positives = 29/49 (59%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T ++V L + L + F +YG+I++ ++ D+LTGR +G FV F Sbjct: 188 TNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRF 236
>NOP12_CANGA (Q6FUS6) Nucleolar protein 12| Length = 396 Score = 37.4 bits (85), Expect = 0.019 Identities = 19/50 (38%), Positives = 25/50 (50%) Frame = +2 Query: 239 QTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 Q VFVG L +E E L +HF G I ++ D T KG+ +V F Sbjct: 227 QRSVFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGKGFAYVQF 276
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 37.0 bits (84), Expect = 0.025 Identities = 17/54 (31%), Positives = 32/54 (59%) Frame = +2 Query: 227 GDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 GD +T +FV + ++T LR+ FE YG I ++ ++ +G+ +GY F+ + Sbjct: 99 GDAFKT-LFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEY 151
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 37.0 bits (84), Expect = 0.025 Identities = 18/49 (36%), Positives = 29/49 (59%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T V++ + E L+ F ++G L V+TD +G+SKG+GFV+F Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSF 238 Score = 33.1 bits (74), Expect = 0.37 Identities = 19/56 (33%), Positives = 26/56 (46%) Frame = +2 Query: 284 EGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXDPNPTITGRR 451 E LR+ F +G I A V+ + GRSKG+GFV F + N I + Sbjct: 308 ERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361 Score = 31.2 bits (69), Expect = 1.4 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +F+ L ++ L F +G+IL V+ D SKGYGFV F Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHF 145 Score = 30.8 bits (68), Expect = 1.8 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++VG L + L + F G IL V D +T RS GY +V F Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNF 59
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 37.0 bits (84), Expect = 0.025 Identities = 18/49 (36%), Positives = 29/49 (59%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T V++ + E L+ F ++G L V+TD +G+SKG+GFV+F Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSF 238 Score = 33.1 bits (74), Expect = 0.37 Identities = 19/56 (33%), Positives = 26/56 (46%) Frame = +2 Query: 284 EGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXDPNPTITGRR 451 E LR+ F +G I A V+ + GRSKG+GFV F + N I + Sbjct: 308 ERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361 Score = 31.2 bits (69), Expect = 1.4 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +F+ L ++ L F +G+IL V+ D SKGYGFV F Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHF 145 Score = 30.8 bits (68), Expect = 1.8 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++VG L + L + F G IL V D +T RS GY +V F Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNF 59
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 37.0 bits (84), Expect = 0.025 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%) Frame = +2 Query: 230 DTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTG--RSKGYGFVTF 388 D K+FVG + + LR+ FEQYG + E ++ DR +SKG FVTF Sbjct: 12 DLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTF 66
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 37.0 bits (84), Expect = 0.025 Identities = 18/48 (37%), Positives = 27/48 (56%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++FV L++ + E L + F YG + E D LT + KG+ FVTF Sbjct: 401 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTF 448
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 37.0 bits (84), Expect = 0.025 Identities = 19/47 (40%), Positives = 28/47 (59%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 V+VGGL + L + F Q G ++ + DR+TG+ +GYGFV F Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 61 Score = 33.1 bits (74), Expect = 0.37 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAV-VITDRLTGRSKGYGFVTF 388 +F+G L E + L F +G IL+ ++ D TG SKGY F+ F Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 37.0 bits (84), Expect = 0.025 Identities = 17/52 (32%), Positives = 26/52 (50%) Frame = +2 Query: 233 TTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T VFVG + ++ + + + F Q G + ++ D TG KGYGF F Sbjct: 4 TAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 36.6 bits (83), Expect = 0.033 Identities = 17/45 (37%), Positives = 27/45 (60%) Frame = +2 Query: 254 VGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 V GL+ T LR+ F +YG I + ++ D+ + RS+G+ FV F Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYF 166
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 36.6 bits (83), Expect = 0.033 Identities = 17/45 (37%), Positives = 27/45 (60%) Frame = +2 Query: 254 VGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 V GL+ T LR+ F +YG I + ++ D+ + RS+G+ FV F Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYF 166
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 36.6 bits (83), Expect = 0.033 Identities = 17/45 (37%), Positives = 27/45 (60%) Frame = +2 Query: 254 VGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 V GL+ T LR+ F +YG I + ++ D+ + RS+G+ FV F Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYF 166
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 36.6 bits (83), Expect = 0.033 Identities = 17/54 (31%), Positives = 31/54 (57%) Frame = +2 Query: 227 GDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 GD +T +FV + ++T LR+ FE YG I ++ + +G+ +GY F+ + Sbjct: 99 GDAFKT-LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEY 151
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 36.6 bits (83), Expect = 0.033 Identities = 18/47 (38%), Positives = 27/47 (57%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +F+ L E E L+ F +G I A ++TD G+SKG+GFV + Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDE-QGKSKGFGFVCY 411 Score = 33.5 bits (75), Expect = 0.28 Identities = 19/47 (40%), Positives = 24/47 (51%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 VF+ L ++ L F +G IL V D L G +KGYGFV F Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDEL-GNAKGYGFVHF 215 Score = 28.5 bits (62), Expect = 9.1 Identities = 16/51 (31%), Positives = 22/51 (43%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T ++VG L L + F G + V D +T RS GY +V F Sbjct: 78 TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNF 128
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 36.6 bits (83), Expect = 0.033 Identities = 17/47 (36%), Positives = 28/47 (59%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +FVG L SE L + F Q G + + V+T++ + +G+G+VTF Sbjct: 5 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTF 51 Score = 31.2 bits (69), Expect = 1.4 Identities = 15/50 (30%), Positives = 30/50 (60%) Frame = +2 Query: 239 QTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 + ++ + L+++ + L+ F Q+G +LE V I + G+ +G+GFV F Sbjct: 112 KARLIIRNLSFKCSEDDLKTVFAQFGAVLE-VNIPRKPDGKMRGFGFVQF 160
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 36.6 bits (83), Expect = 0.033 Identities = 17/48 (35%), Positives = 27/48 (56%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++FV L + + E L + F +YG + E D LT + KG+ F+TF Sbjct: 403 RLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITF 450
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 36.6 bits (83), Expect = 0.033 Identities = 18/47 (38%), Positives = 27/47 (57%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +FVG L +++ E L + F Q G ++ A +IT R G +G G V F Sbjct: 138 IFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR--GHHRGMGTVEF 182
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 36.6 bits (83), Expect = 0.033 Identities = 17/54 (31%), Positives = 31/54 (57%) Frame = +2 Query: 227 GDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 GD +T +FV + ++T LR+ FE YG I ++ + +G+ +GY F+ + Sbjct: 99 GDAFKT-LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEY 151
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 36.6 bits (83), Expect = 0.033 Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 2/120 (1%) Frame = +2 Query: 35 TEGGAPELTSQFNRA--RNLVHRGLARSPSTEASFLVASTRSKAGGRGGVMXXXXXXXXX 208 TE G P + NL G ++ ++S ++ GG Sbjct: 50 TEYGVPHTQDYAGQTGEHNLTLYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQ 109 Query: 209 XXXXRFGDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +T ++ V + + LRQ F Q+G IL+ +I + SKG+GFVTF Sbjct: 110 SSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTF 167
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 36.6 bits (83), Expect = 0.033 Identities = 18/47 (38%), Positives = 28/47 (59%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +F+ L + ++ L F +GDIL + + TD G+SKG+GFV F Sbjct: 127 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHF 172 Score = 34.3 bits (77), Expect = 0.16 Identities = 21/64 (32%), Positives = 27/64 (42%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXDP 427 +FV L E L + F YG I A V+ G+SKG+GFV F + Sbjct: 323 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTE-NGKSKGFGFVCFSTPEEATKAITEK 381 Query: 428 NPTI 439 N I Sbjct: 382 NQQI 385
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 36.2 bits (82), Expect = 0.043 Identities = 21/69 (30%), Positives = 34/69 (49%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXD 424 +++VG + ++ LR E++G I A V+ D+ +GRS+ +GFVT Sbjct: 85 RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEK 144 Query: 425 PNPTITGRR 451 N T G R Sbjct: 145 LNDTEIGGR 153
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 36.2 bits (82), Expect = 0.043 Identities = 16/49 (32%), Positives = 29/49 (59%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T ++V L + L + F +YG+I++ ++ D+LTG+ +G FV F Sbjct: 171 TNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRF 219
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 36.2 bits (82), Expect = 0.043 Identities = 19/46 (41%), Positives = 25/46 (54%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFV 382 K+F+G L E + +R FEQYG +LE +I K YGFV Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFV 40 Score = 30.4 bits (67), Expect = 2.4 Identities = 12/35 (34%), Positives = 22/35 (62%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 TK+ VG ++ ++ LR FE+YG ++E ++ D Sbjct: 78 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 36.2 bits (82), Expect = 0.043 Identities = 19/46 (41%), Positives = 25/46 (54%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFV 382 K+F+G L E + +R FEQYG +LE +I K YGFV Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFV 40 Score = 30.4 bits (67), Expect = 2.4 Identities = 12/35 (34%), Positives = 22/35 (62%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 TK+ VG ++ ++ LR FE+YG ++E ++ D Sbjct: 78 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 36.2 bits (82), Expect = 0.043 Identities = 19/46 (41%), Positives = 25/46 (54%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFV 382 K+F+G L E + +R FEQYG +LE +I K YGFV Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFV 40 Score = 30.4 bits (67), Expect = 2.4 Identities = 12/35 (34%), Positives = 22/35 (62%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 TK+ VG ++ ++ LR FE+YG ++E ++ D Sbjct: 78 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 36.2 bits (82), Expect = 0.043 Identities = 19/46 (41%), Positives = 25/46 (54%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFV 382 K+F+G L E + +R FEQYG +LE +I K YGFV Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFV 40 Score = 32.0 bits (71), Expect = 0.82 Identities = 13/37 (35%), Positives = 23/37 (62%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 T TK+ VG ++ ++ LR FE+YG ++E ++ D Sbjct: 76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD 112
>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2| Length = 953 Score = 36.2 bits (82), Expect = 0.043 Identities = 18/55 (32%), Positives = 32/55 (58%) Frame = +2 Query: 221 RFGDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVT 385 R G + ++V GL+ T + L+ F +YG ++ A V+T+ + ++ YGFVT Sbjct: 400 RVGSGSGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVT 454
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 36.2 bits (82), Expect = 0.043 Identities = 19/46 (41%), Positives = 25/46 (54%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFV 382 K+F+G L E + +R FEQYG +LE +I K YGFV Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFV 40 Score = 32.0 bits (71), Expect = 0.82 Identities = 13/37 (35%), Positives = 23/37 (62%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 T TK+ VG ++ ++ LR FE+YG ++E ++ D Sbjct: 76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD 112
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 36.2 bits (82), Expect = 0.043 Identities = 19/46 (41%), Positives = 25/46 (54%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFV 382 K+F+G L E + +R FEQYG +LE +I K YGFV Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFV 40 Score = 30.4 bits (67), Expect = 2.4 Identities = 12/35 (34%), Positives = 22/35 (62%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 TK+ VG ++ ++ LR FE+YG ++E ++ D Sbjct: 78 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 36.2 bits (82), Expect = 0.043 Identities = 19/46 (41%), Positives = 25/46 (54%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFV 382 K+F+G L E + +R FEQYG +LE +I K YGFV Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFV 40 Score = 30.4 bits (67), Expect = 2.4 Identities = 12/35 (34%), Positives = 22/35 (62%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 TK+ VG ++ ++ LR FE+YG ++E ++ D Sbjct: 78 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3| RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 282 Score = 36.2 bits (82), Expect = 0.043 Identities = 17/45 (37%), Positives = 27/45 (60%) Frame = +2 Query: 254 VGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 V L+ +T E LR F ++G I + D+ TGR+KG+ FV++ Sbjct: 206 VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 36.2 bits (82), Expect = 0.043 Identities = 19/49 (38%), Positives = 26/49 (53%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +++FV LA+ T SE L HF YG I E + + TG G F+ F Sbjct: 221 SRLFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQF 269
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 35.8 bits (81), Expect = 0.057 Identities = 15/48 (31%), Positives = 28/48 (58%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++F+ + + + E R+ F +G++ E V D TG+SKG+ +V F Sbjct: 346 RLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLF 393
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 35.8 bits (81), Expect = 0.057 Identities = 14/48 (29%), Positives = 27/48 (56%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++F+ + + + + ++ F YG++ E V D TG SKG+ +V F Sbjct: 326 RLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLF 373
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 35.8 bits (81), Expect = 0.057 Identities = 14/48 (29%), Positives = 27/48 (56%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++F+ + + + R+ F YG++ E + D TG+SKG+ +V F Sbjct: 331 RLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLF 378
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 35.8 bits (81), Expect = 0.057 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVT 385 +F+ LA ET L Q F +G + ++ D T + KGYGFV+ Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVS 449
>YHH5_YEAST (P38760) Hypothetical 75.9 kDa protein in SPO13-ARG4 intergenic| region Length = 659 Score = 35.8 bits (81), Expect = 0.057 Identities = 20/64 (31%), Positives = 30/64 (46%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXDP 427 +F+G L E LR+ F++Y A V D LT +S GYG++ F + Sbjct: 113 LFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLNFKDKNDAESARKEF 172 Query: 428 NPTI 439 N T+ Sbjct: 173 NYTV 176
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 35.8 bits (81), Expect = 0.057 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVT 385 +F+ LA ET L Q F +G + ++ D T + KGYGFV+ Sbjct: 440 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVS 485
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 35.4 bits (80), Expect = 0.074 Identities = 12/47 (25%), Positives = 25/47 (53%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++VG + + +E L HF G + ++ D+ +G KG+ ++ F Sbjct: 169 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEF 215
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 35.4 bits (80), Expect = 0.074 Identities = 16/47 (34%), Positives = 28/47 (59%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +FVG L S+ L + F Q G + + V+T++ + +G+G+VTF Sbjct: 5 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTF 51 Score = 32.3 bits (72), Expect = 0.63 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Frame = +2 Query: 230 DTTQTK-VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 D T+ K VF+ L++++ E L + +Q+GD+ V+ T SKG F F Sbjct: 319 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQF 372 Score = 29.3 bits (64), Expect = 5.3 Identities = 14/50 (28%), Positives = 28/50 (56%) Frame = +2 Query: 239 QTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 + ++ + L+++ + L+ F YG +LE V I + G+ +G+ FV F Sbjct: 112 KARLIIRNLSFKCSEDDLKAVFTHYGTVLE-VNIPKKPDGKMRGFAFVQF 160
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 35.4 bits (80), Expect = 0.074 Identities = 12/47 (25%), Positives = 25/47 (53%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++VG + + +E L HF G + ++ D+ +G KG+ ++ F Sbjct: 173 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEF 219
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 35.4 bits (80), Expect = 0.074 Identities = 12/47 (25%), Positives = 25/47 (53%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++VG + + +E L HF G + ++ D+ +G KG+ ++ F Sbjct: 173 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEF 219
>NOP12_SCHPO (O13741) Nucleolar protein 12| Length = 438 Score = 35.4 bits (80), Expect = 0.074 Identities = 18/51 (35%), Positives = 27/51 (52%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T+ VFVG LA+E E L ++F G I ++ D T KG+ ++ F Sbjct: 268 TKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQF 318
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 35.4 bits (80), Expect = 0.074 Identities = 18/54 (33%), Positives = 31/54 (57%) Frame = +2 Query: 221 RFGDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFV 382 R +T TK+FVG L +T + +R+ F++YG ++E ++ + YGFV Sbjct: 79 RAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV--------RNYGFV 124 Score = 33.1 bits (74), Expect = 0.37 Identities = 18/46 (39%), Positives = 26/46 (56%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFV 382 K+F+G L +T + LR FE+YG ++E V+ K YGFV Sbjct: 8 KLFIGNLDEKTQATELRALFEKYGTVVECDVV--------KNYGFV 45
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 35.4 bits (80), Expect = 0.074 Identities = 20/51 (39%), Positives = 29/51 (56%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T T VFV + + E L++ F +YG VI D +G+SKG+GFV + Sbjct: 197 TFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRY 246
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 35.4 bits (80), Expect = 0.074 Identities = 20/51 (39%), Positives = 29/51 (56%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T T VFV + + E L++ F +YG VI D +G+SKG+GFV + Sbjct: 197 TFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRY 246
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 35.4 bits (80), Expect = 0.074 Identities = 20/51 (39%), Positives = 29/51 (56%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T T VFV + + E L++ F +YG VI D +G+SKG+GFV + Sbjct: 197 TFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRY 246
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 35.4 bits (80), Expect = 0.074 Identities = 20/51 (39%), Positives = 29/51 (56%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T T VFV + + E L++ F +YG VI D +G+SKG+GFV + Sbjct: 197 TFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRY 246
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 35.4 bits (80), Expect = 0.074 Identities = 20/51 (39%), Positives = 29/51 (56%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T T VFV + + E L++ F +YG VI D +G+SKG+GFV + Sbjct: 197 TFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRY 246
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 35.4 bits (80), Expect = 0.074 Identities = 20/51 (39%), Positives = 29/51 (56%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T T VFV + + E L++ F +YG VI D +G+SKG+GFV + Sbjct: 197 TFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRY 246
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 35.4 bits (80), Expect = 0.074 Identities = 14/47 (29%), Positives = 29/47 (61%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +FV G+A + L+Q F ++G + ++ + +T S+G+GF++F Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSF 149
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 35.4 bits (80), Expect = 0.074 Identities = 18/49 (36%), Positives = 27/49 (55%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 + ++V + E LR+HF Q G I ++ D G+SKG+GFV F Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDE-KGKSKGFGFVCF 351 Score = 33.1 bits (74), Expect = 0.37 Identities = 21/64 (32%), Positives = 30/64 (46%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXDP 427 VFV L + L+ F+++G+I+ V T G+S+GYGFV F Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLE-DGKSRGYGFVQFEQEDAAHAAIQTL 172 Query: 428 NPTI 439 N TI Sbjct: 173 NSTI 176
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 35.0 bits (79), Expect = 0.097 Identities = 20/56 (35%), Positives = 29/56 (51%) Frame = +2 Query: 221 RFGDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +F DT + VFVGGL+ E L+ F+ +G+I+ + KG GFV F Sbjct: 296 QFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKI------PPGKGCGFVQF 345 Score = 30.0 bits (66), Expect = 3.1 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 1/73 (1%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHF-EQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXX 412 ++ +FVG L+ + F +Y A ++TD T S+GYGFV F Sbjct: 184 SEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKS 243 Query: 413 XXXDPNPTITGRR 451 + I G R Sbjct: 244 ALAEMQGQICGDR 256
>NOP12_ASHGO (Q75BJ7) Nucleolar protein 12| Length = 426 Score = 35.0 bits (79), Expect = 0.097 Identities = 18/47 (38%), Positives = 24/47 (51%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 VFVG L +E E L +HF G I ++ D T KG+ +V F Sbjct: 261 VFVGNLDFEESEESLWKHFMSCGPIEYVRIVRDPKTNVGKGFAYVQF 307
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 35.0 bits (79), Expect = 0.097 Identities = 17/49 (34%), Positives = 28/49 (57%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T V++ + + LR+ F +G+ L V+ D TGRS+G+GFV + Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNY 238 Score = 33.9 bits (76), Expect = 0.22 Identities = 19/54 (35%), Positives = 25/54 (46%) Frame = +2 Query: 290 LRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXDPNPTITGRR 451 LR+ F YG I A V+T+ G SKG+GFV F + N I + Sbjct: 310 LRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTK 361
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 35.0 bits (79), Expect = 0.097 Identities = 17/47 (36%), Positives = 28/47 (59%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 V++ + E L+ F ++G L V+TD +G+SKG+GFV+F Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSF 238 Score = 32.3 bits (72), Expect = 0.63 Identities = 19/56 (33%), Positives = 26/56 (46%) Frame = +2 Query: 284 EGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFXXXXXXXXXXXDPNPTITGRR 451 E LR+ F +G I A V+ + GRSKG+GFV F + N I + Sbjct: 308 ERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
>YQO4_CAEEL (Q09295) Putative RNA-binding protein EEED8.4| Length = 237 Score = 34.7 bits (78), Expect = 0.13 Identities = 12/47 (25%), Positives = 27/47 (57%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 VF+G + + + E + +HF+ G I++ + D+ T + K + ++ F Sbjct: 103 VFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEF 149
>NOP12_YARLI (Q6C2Q7) Nucleolar protein 12| Length = 509 Score = 34.7 bits (78), Expect = 0.13 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 VFVG L +E E L + F GD+ ++ D T KG+ +V F Sbjct: 276 VFVGALDFEEQEESLWEAFSSCGDVEYVRIVRDPKTNVGKGFAYVQF 322
>MPS1_BRARE (Q8AYG3) Mitotic checkpoint serine/threonine-protein kinase Mps1| (EC 2.7.12.2) (Monopolar spindle 1) (Nightcap protein) Length = 983 Score = 34.7 bits (78), Expect = 0.13 Identities = 18/39 (46%), Positives = 22/39 (56%) Frame = -3 Query: 363 ERPVRRSVMTTASRMSPYCSKCCRSPSDGVSHASPPTNT 247 +RPV SV TA +M P C +P GVS+ PPT T Sbjct: 601 QRPVIVSVPATAQKMCPTALPC--TPQSGVSYIQPPTQT 637
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 34.3 bits (77), Expect = 0.16 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 ++F+ L + E RQ F QYG++ E + + TG+ KG+ V F Sbjct: 302 RLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQF 349
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 34.3 bits (77), Expect = 0.16 Identities = 16/49 (32%), Positives = 27/49 (55%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T ++V L + L F +YG I++ ++ D+LTGR +G FV + Sbjct: 213 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRY 261
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 34.3 bits (77), Expect = 0.16 Identities = 16/49 (32%), Positives = 27/49 (55%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 T ++V L + L F +YG I++ ++ D+LTGR +G FV + Sbjct: 211 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRY 259
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 34.3 bits (77), Expect = 0.16 Identities = 15/45 (33%), Positives = 26/45 (57%) Frame = +2 Query: 254 VGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 V L+ +T L++ F +G I + D+ TG+SKG+ F++F Sbjct: 243 VTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISF 287
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 34.3 bits (77), Expect = 0.16 Identities = 15/45 (33%), Positives = 26/45 (57%) Frame = +2 Query: 254 VGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 V L+ +T L++ F +G I + D+ TG+SKG+ F++F Sbjct: 243 VTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISF 287
>SET1_SCHPO (Q9Y7R4) Histone-lysine N-methyltransferase, H3 lysine-4 specific| (EC 2.1.1.43) (Set1 complex component set1) (Set1C component set1) (COMPASS component set1) (SET domain-containing protein 1) (Spset1) Length = 920 Score = 33.9 bits (76), Expect = 0.22 Identities = 17/54 (31%), Positives = 29/54 (53%) Frame = +2 Query: 227 GDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 G T+VFV ++ SE LR HF+ +G++ + + + TG S G ++F Sbjct: 89 GPEPPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISF 142
>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 276 Score = 33.9 bits (76), Expect = 0.22 Identities = 14/47 (29%), Positives = 25/47 (53%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 +++G + LR++F Q+G + + + TG SKGY +V F Sbjct: 43 IYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEF 89
>CPSF6_MOUSE (Q6NVF9) Cleavage and polyadenylation specificity factor 6| Length = 551 Score = 33.5 bits (75), Expect = 0.28 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYG--DILEAVVITDRLTGRSKGYGFV 382 +++G L W T E L + G DILE +R G+SKG+ V Sbjct: 83 LYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALV 129
>CPSF6_HUMAN (Q16630) Cleavage and polyadenylation specificity factor 6| (Cleavage and polyadenylation specificity factor 68 kDa subunit) (CPSF 68 kDa subunit) (Pre-mRNA cleavage factor Im 68-kDa subunit) (Protein HPBRII-4/7) Length = 551 Score = 33.5 bits (75), Expect = 0.28 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYG--DILEAVVITDRLTGRSKGYGFV 382 +++G L W T E L + G DILE +R G+SKG+ V Sbjct: 83 LYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALV 129
>CPSF6_CHICK (Q5ZL34) Cleavage and polyadenylation specificity factor 6| Length = 551 Score = 33.5 bits (75), Expect = 0.28 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYG--DILEAVVITDRLTGRSKGYGFV 382 +++G L W T E L + G DILE +R G+SKG+ V Sbjct: 83 LYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALV 129
>YQOC_CAEEL (Q09301) Putative RNA-binding protein EEED8.12| Length = 197 Score = 33.5 bits (75), Expect = 0.28 Identities = 12/47 (25%), Positives = 26/47 (55%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTF 388 VF+G + + + E + +HF+ G I+ + D+ T + K + ++ F Sbjct: 63 VFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEF 109 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,352,604 Number of Sequences: 219361 Number of extensions: 659401 Number of successful extensions: 2629 Number of sequences better than 10.0: 328 Number of HSP's better than 10.0 without gapping: 2384 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2596 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
