>FDH_HORVU (Q9ZRI8) Formate dehydrogenase, mitochondrial precursor (EC|
           1.2.1.2) (NAD-dependent formate dehydrogenase) (FDH)
          Length = 377

 Score =  252 bits (643), Expect = 4e-67
 Identities = 123/127 (96%), Positives = 124/127 (97%)
 Frame = +3

Query: 96  MAAMWRAAARQLVDRAVGSRAAHTSAGSKKIVGVFYQAGEYADKNPNFVGCVEGALGIRD 275
           MAAMWRAAARQLVDRAVGSRAAHTSAGSKKIVGVFYQAGEYADKNPNFVGCVEGALGIRD
Sbjct: 1   MAAMWRAAARQLVDRAVGSRAAHTSAGSKKIVGVFYQAGEYADKNPNFVGCVEGALGIRD 60

Query: 276 WLESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVTAERIKKAKNLELLLTAG 455
           WLESKGHHYIVTDDKEG NSELEKHIEDMHVLITTPFHPAYVTAE+IKKAK  ELLLTAG
Sbjct: 61  WLESKGHHYIVTDDKEGFNSELEKHIEDMHVLITTPFHPAYVTAEKIKKAKTPELLLTAG 120

Query: 456 IGSDHID 476
           IGSDHID
Sbjct: 121 IGSDHID 127

>FDH1_ORYSA (Q9SXP2) Formate dehydrogenase 1, mitochondrial precursor (EC|
           1.2.1.2) (NAD-dependent formate dehydrogenase 1) (FDH 1)
          Length = 376

 Score =  240 bits (613), Expect = 1e-63
 Identities = 116/125 (92%), Positives = 121/125 (96%)
 Frame = +3

Query: 102 AMWRAAARQLVDRAVGSRAAHTSAGSKKIVGVFYQAGEYADKNPNFVGCVEGALGIRDWL 281
           AMWRAAA  L+ RA+GSRAAHTSAGSKKIVGVFY+ GEYADKNPNFVGCVEGALGIR+WL
Sbjct: 2   AMWRAAAGHLLGRALGSRAAHTSAGSKKIVGVFYKGGEYADKNPNFVGCVEGALGIREWL 61

Query: 282 ESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVTAERIKKAKNLELLLTAGIG 461
           ESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYV+AERIKKAKNLELLLTAGIG
Sbjct: 62  ESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVSAERIKKAKNLELLLTAGIG 121

Query: 462 SDHID 476
           SDHID
Sbjct: 122 SDHID 126

>FDH2_ORYSA (Q67U69) Formate dehydrogenase 2, mitochondrial precursor (EC|
           1.2.1.2) (NAD-dependent formate dehydrogenase 2) (FDH 2)
          Length = 378

 Score =  217 bits (553), Expect = 1e-56
 Identities = 106/127 (83%), Positives = 114/127 (89%), Gaps = 2/127 (1%)
 Frame = +3

Query: 102 AMWRA--AARQLVDRAVGSRAAHTSAGSKKIVGVFYQAGEYADKNPNFVGCVEGALGIRD 275
           AMWRA  AA QL+ RA+ S AA TSAGSKK+VGVFY+ GEYADKNPNFVGCV+ ALGIR 
Sbjct: 2   AMWRAPSAAGQLLGRALASTAAQTSAGSKKVVGVFYKGGEYADKNPNFVGCVDSALGIRG 61

Query: 276 WLESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVTAERIKKAKNLELLLTAG 455
           WLESKGH YIVTDDKEG+N ELEKHIED HVLITTPFHPAY+TAERIKKAKNLELLLTAG
Sbjct: 62  WLESKGHRYIVTDDKEGINCELEKHIEDAHVLITTPFHPAYITAERIKKAKNLELLLTAG 121

Query: 456 IGSDHID 476
           +GSDHID
Sbjct: 122 VGSDHID 128

>FDH_ARATH (Q9S7E4) Formate dehydrogenase, mitochondrial precursor (EC|
           1.2.1.2) (NAD-dependent formate dehydrogenase) (FDH)
          Length = 384

 Score =  184 bits (466), Expect = 2e-46
 Identities = 88/106 (83%), Positives = 96/106 (90%)
 Frame = +3

Query: 165 TSAGSKKIVGVFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKEGLNSELE 344
           +S  SKKIVGVFY+A EYA KNPNF+GCVE ALGIRDWLES+GH YIVTDDKEG + ELE
Sbjct: 31  SSGDSKKIVGVFYKANEYATKNPNFLGCVENALGIRDWLESQGHQYIVTDDKEGPDCELE 90

Query: 345 KHIEDMHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDCQ 482
           KHI D+HVLI+TPFHPAYVTAERIKKAKNL+LLLTAGIGSDHID Q
Sbjct: 91  KHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQ 136

>FDH_SOLTU (Q07511) Formate dehydrogenase, mitochondrial precursor (EC|
           1.2.1.2) (NAD-dependent formate dehydrogenase) (FDH)
          Length = 381

 Score =  180 bits (457), Expect = 2e-45
 Identities = 89/131 (67%), Positives = 105/131 (80%), Gaps = 2/131 (1%)
 Frame = +3

Query: 90  VSMAAMWRAAARQLVDRA--VGSRAAHTSAGSKKIVGVFYQAGEYADKNPNFVGCVEGAL 263
           ++M+ +   AAR +   +  V +R    S G KKIVGVFY+A EYA+ NPNF+GC E AL
Sbjct: 1   MAMSRVASTAARAITSPSSLVFTRELQASPGPKKIVGVFYKANEYAEMNPNFLGCAENAL 60

Query: 264 GIRDWLESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVTAERIKKAKNLELL 443
           GIR+WLESKGH YIVT DKEG + ELEKHI D+HVLI+TPFHPAYVTAERIKKAKNL+LL
Sbjct: 61  GIREWLESKGHQYIVTPDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLL 120

Query: 444 LTAGIGSDHID 476
           LTAGIGSDH+D
Sbjct: 121 LTAGIGSDHVD 131

>FDH_PICAN (P33677) Formate dehydrogenase (EC 1.2.1.2) (NAD-dependent formate|
           dehydrogenase) (FDH)
          Length = 361

 Score =  130 bits (328), Expect = 2e-30
 Identities = 61/98 (62%), Positives = 73/98 (74%)
 Frame = +3

Query: 183 KIVGVFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHIEDM 362
           K+V V Y AG++A       GC E ALGIRDWLE +GH  +VT DKEG NS LEK+I D 
Sbjct: 1   KVVLVLYDAGKHAQDEERLYGCTENALGIRDWLEKQGHDVVVTSDKEGQNSVLEKNISDA 60

Query: 363 HVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHID 476
            V+I+TPFHPAY+T ERI KAK L+LL+ AG+GSDHID
Sbjct: 61  DVIISTPFHPAYITKERIDKAKKLKLLVVAGVGSDHID 98

>FDH_NEUCR (Q07103) Formate dehydrogenase (EC 1.2.1.2) (NAD-dependent formate|
           dehydrogenase) (FDH)
          Length = 375

 Score =  116 bits (290), Expect = 4e-26
 Identities = 48/98 (48%), Positives = 71/98 (72%)
 Frame = +3

Query: 183 KIVGVFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHIEDM 362
           K++ V Y  G++ ++ P  +G ++  LG+R WLE +GH  + T DK+G NS  +K +ED 
Sbjct: 3   KVLAVLYDGGKHGEEVPELLGTIQNELGLRKWLEDQGHTLVTTCDKDGENSTFDKELEDA 62

Query: 363 HVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHID 476
            ++ITTPFHP Y+TAER+ +AK L+L +TAGIGSDH+D
Sbjct: 63  EIIITTPFHPGYLTAERLARAKKLKLAVTAGIGSDHVD 100

>FDH_EMENI (Q03134) Probable formate dehydrogenase (EC 1.2.1.2) (NAD-dependent|
           formate dehydrogenase) (FDH)
          Length = 377

 Score =  115 bits (288), Expect = 7e-26
 Identities = 51/94 (54%), Positives = 65/94 (69%)
 Frame = +3

Query: 195 VFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHIEDMHVLI 374
           V Y  G +A   P  +G  E  LGIR W+E +GH  + T DK+G NS  +K + D  V+I
Sbjct: 2   VLYDGGSHAKDQPGLLGTTENELGIRKWIEEQGHTLVTTSDKDGENSTFDKELVDAEVII 61

Query: 375 TTPFHPAYVTAERIKKAKNLELLLTAGIGSDHID 476
           TTPFHP Y+TAER+ KAKNL+L +TAGIGSDH+D
Sbjct: 62  TTPFHPGYLTAERLAKAKNLKLAVTAGIGSDHVD 95

>FDH_PSESR (P33160) Formate dehydrogenase (EC 1.2.1.2) (NAD-dependent formate|
           dehydrogenase) (FDH)
          Length = 400

 Score = 98.2 bits (243), Expect = 1e-20
 Identities = 47/81 (58%), Positives = 60/81 (74%)
 Frame = +3

Query: 240 VGCVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVTAERIK 419
           +G V G LG+R +LES GH  +VT DK+G +S  E+ + D  V+I+ PF PAY+T ERI 
Sbjct: 50  LGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIA 109

Query: 420 KAKNLELLLTAGIGSDHIDCQ 482
           KAKNL+L LTAGIGSDH+D Q
Sbjct: 110 KAKNLKLALTAGIGSDHVDLQ 130

>FDH2_YEAST (Q08987) Formate dehydrogenase 2 (EC 1.2.1.2) (NAD-dependent|
           formate dehydrogenase 2)
          Length = 376

 Score = 96.7 bits (239), Expect = 3e-20
 Identities = 41/101 (40%), Positives = 72/101 (71%), Gaps = 1/101 (0%)
 Frame = +3

Query: 183 KIVGVFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKEGL-NSELEKHIED 359
           K++ V Y+ G++A++    +GC+E  LGIR+++E +G+  + T DK+    S +++ ++D
Sbjct: 5   KVLLVLYEGGKHAEEQEKLLGCIENELGIRNFIEEQGYELVTTIDKDPEPTSTVDRELKD 64

Query: 360 MHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDCQ 482
             ++ITTPF PAY++  RI +A NL+L +TAG+GSDH+D +
Sbjct: 65  AEIVITTPFFPAYISRNRIAEAPNLKLCVTAGVGSDHVDLE 105

>FDH1_YEAST (Q08911) Formate dehydrogenase 1 (EC 1.2.1.2) (NAD-dependent|
           formate dehydrogenase 1)
          Length = 376

 Score = 96.7 bits (239), Expect = 3e-20
 Identities = 41/101 (40%), Positives = 72/101 (71%), Gaps = 1/101 (0%)
 Frame = +3

Query: 183 KIVGVFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKEGL-NSELEKHIED 359
           K++ V Y+ G++A++    +GC+E  LGIR+++E +G+  + T DK+    S +++ ++D
Sbjct: 5   KVLLVLYEGGKHAEEQEKLLGCIENELGIRNFIEEQGYELVTTIDKDPEPTSTVDRELKD 64

Query: 360 MHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDCQ 482
             ++ITTPF PAY++  RI +A NL+L +TAG+GSDH+D +
Sbjct: 65  AEIVITTPFFPAYISRNRIAEAPNLKLCVTAGVGSDHVDLE 105

>AKSF_METJA (Q58991) Threo-isocitrate dehydrogenase [NAD] (EC 1.1.1.-)|
          Length = 347

 Score = 33.1 bits (74), Expect = 0.43
 Identities = 39/122 (31%), Positives = 52/122 (42%), Gaps = 11/122 (9%)
 Frame = +3

Query: 135 DRAVGSRAAHTSAGSKKIVGVFYQAGEYADKNPNF-VGCVEGA--LGIRDWL------ES 287
           D A+  R   T  GS++I+   +   EYA KN    V C+  A  L I D L      E 
Sbjct: 144 DTAIAERVI-TRKGSERIIRFAF---EYAIKNNRKKVSCIHKANVLRITDGLFLEVFNEI 199

Query: 288 KGHHYIVTDDK--EGLNSELEKHIEDMHVLITTPFHPAYVTAERIKKAKNLELLLTAGIG 461
           K H+ I  DD   +     L KH E   V++TT      ++ E       L L  +A IG
Sbjct: 200 KKHYNIEADDYLVDSTAMNLIKHPEKFDVIVTTNMFGDILSDEASALIGGLGLAPSANIG 259

Query: 462 SD 467
            D
Sbjct: 260 DD 261

>SERA_ARCFU (O29445) D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (PGDH)|
          Length = 527

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
 Frame = +3

Query: 318 KEGLNSELEKHIEDMHVLITTPFHPAYVT-------AERIKKAKNLELLLTAGIGSDHID 476
           K GL  E++  +    ++   P + A V        AE I+ AKNL+++  AG+G D+ID
Sbjct: 19  KNGLEVEVKTGMSREELIREVPKYEAIVVRSQTKVDAEVIQAAKNLKIIGRAGVGVDNID 78

>MOAB_STAAW (Q8NV99) Molybdenum cofactor biosynthesis protein B|
          Length = 168

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 246 CVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHI-EDMHVLITT 380
           CV   L   D   S  H+ IV D+K  + ++++K + ED+ V+ITT
Sbjct: 34  CVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITT 79

>MOAB_STAAS (Q6G747) Molybdenum cofactor biosynthesis protein B|
          Length = 168

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 246 CVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHI-EDMHVLITT 380
           CV   L   D   S  H+ IV D+K  + ++++K + ED+ V+ITT
Sbjct: 34  CVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITT 79

>MOAB_STAAN (P99137) Molybdenum cofactor biosynthesis protein B|
          Length = 168

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 246 CVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHI-EDMHVLITT 380
           CV   L   D   S  H+ IV D+K  + ++++K + ED+ V+ITT
Sbjct: 34  CVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITT 79

>MOAB_STAAM (P65406) Molybdenum cofactor biosynthesis protein B|
          Length = 168

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 246 CVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHI-EDMHVLITT 380
           CV   L   D   S  H+ IV D+K  + ++++K + ED+ V+ITT
Sbjct: 34  CVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITT 79

>MOAB_STAAC (Q5HDT2) Molybdenum cofactor biosynthesis protein B|
          Length = 168

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 246 CVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHI-EDMHVLITT 380
           CV   L   D   S  H+ IV D+K  + ++++K + ED+ V+ITT
Sbjct: 34  CVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITT 79

>TCPE_ARATH (O04450) T-complex protein 1 subunit epsilon (TCP-1-epsilon)|
           (CCT-epsilon)
          Length = 535

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +3

Query: 249 VEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHIEDMHV-LITTPFHP 392
           VEG +G +  LE     Y +  DK+  + ++ K IED H+ ++T PF P
Sbjct: 207 VEGKVGGK--LEDTELIYGILIDKDMSHPQMPKQIEDAHIAILTCPFEP 253

>ARCB_HAEIN (P44578) Aerobic respiration control sensor protein arcB homolog|
           (EC 2.7.13.3)
          Length = 325

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +3

Query: 294 HHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGS 464
           +H+IV D   G++ E +KHI +M+  +      +  +   +  +KNL  L+  G  S
Sbjct: 269 YHFIVKDTGMGISPEEQKHIFEMYYQVKESRQQSAGSGIGLAISKNLAQLMGRGFNS 325

>MIA40_CANGA (Q6FW26) Intermembrane space import and assembly protein 40,|
           mitochondrial precursor (Mitochondrial import inner
           membrane translocase TIM40)
          Length = 404

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = +3

Query: 216 YADKNPNFVGCVEGALGIRDWLESKGHHYI--VTDDKEGLNSELEKHI---EDMHVLITT 380
           Y++  P  + CVE    ++D       HY   + D  +  N + EK++   +D  V  T 
Sbjct: 315 YSEAEPKGIDCVEKFQHMQDCFRRYPEHYAEQLADPADDENVDHEKNLSEGKDTGVDSTP 374

Query: 381 PFHPAYVTAERIKK 422
           P   AY+  E+ KK
Sbjct: 375 PKDEAYLKTEKEKK 388

>Y169_METJA (Q57633) Hypothetical ATP-binding protein MJ0169|
          Length = 263

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +3

Query: 300 YIVTDDKEGLNSELEKH--IEDMHVLITTPFHPAYVTAERIKKAKNL 434
           Y++ D   GLN E+  H  I D  +L+ TP   + + A R+K++  +
Sbjct: 114 YVIIDAPAGLNREMATHLAIADKLLLVVTPEMFSIIDAVRLKESAEM 160

>NHR6_CAEEL (P41829) Nuclear hormone receptor family member nhr-6 (Cnr8)|
          Length = 619

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -2

Query: 256 PSTQPTKLGFLSAY-SPAW*NTPTIFLLPADVCAALDPTARSTSCLAAALHIAAMETEGS 80
           P++ P   GFL ++ +P   +TPT F +P++     D      +  A  LH  A   EG 
Sbjct: 229 PTSPPQLQGFLRSFLNPDNLSTPTSFGVPSETALDADKMCAVCNDRAVCLHYGARTCEGC 288

Query: 79  R 77
           +
Sbjct: 289 K 289

>YDW7_SCHPO (O13913) Hypothetical protein C23C11.07 in chromosome I|
          Length = 110

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 384 FHPAYVTAERIKKAKNLELLLTAGIGSDHIDC 479
           FHP Y+ +    KA++  +LL AG+G   + C
Sbjct: 52  FHPTYLNSAAPSKAQSHPVLLAAGVGGIVVRC 83


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,919,740
Number of Sequences: 219361
Number of extensions: 1190393
Number of successful extensions: 4071
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4062
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)