ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast56c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PHF8_MOUSE (Q80TJ7) PHD finger protein 8 29 3.0
2FBX38_MOUSE (Q8BMI0) F-box only protein 38 (Modulator of KLF7 ac... 29 3.9
3HRX_HUMAN (Q03164) Zinc finger protein HRX (ALL-1) (Trithorax-li... 28 6.7

>PHF8_MOUSE (Q80TJ7) PHD finger protein 8|
          Length = 1023

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 5   QTRPDQTNQRRTAPHPSHQTSSQPDSKRAPE 97
           Q RP  +N   T P P+  T+ QPD+  +P+
Sbjct: 904 QPRPQDSNPIMTMPAPTVATTPQPDTSSSPQ 934



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>FBX38_MOUSE (Q8BMI0) F-box only protein 38 (Modulator of KLF7 activity) (MoKA)|
          Length = 1194

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 179 AEPRPPEEDTSRWCCCS 129
           +EP PPE D SR C CS
Sbjct: 743 SEPSPPEVDVSRQCVCS 759



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>HRX_HUMAN (Q03164) Zinc finger protein HRX (ALL-1) (Trithorax-like protein)|
          Length = 3969

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 5    QTRPDQTNQRRTAPHPSHQTSSQPDSKRAP 94
            ++ P+Q+ Q++ AP PS     +P  K  P
Sbjct: 1336 ESGPEQSKQKKVAPRPSIPVKQKPKEKEKP 1365


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.308    0.124    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,878,452
Number of Sequences: 219361
Number of extensions: 382102
Number of successful extensions: 1010
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 80,573,946
effective HSP length: 35
effective length of database: 72,896,311
effective search space used: 1749511464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
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