ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast56b12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 115 8e-23
2gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbare str... 115 8e-23
3gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbare str... 115 8e-23
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 115 8e-23
5gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequence 115 8e-23
6dbj|AK063645.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 8e-23
7gb|AY106116.1| Zea mays PCO091367 mRNA sequence 74 3e-10
8emb|CR722992.2|CNS0GKT2 Tetraodon nigroviridis full-length cDNA 48 0.015
9emb|CR722982.2|CNS0GKSS Tetraodon nigroviridis full-length cDNA 48 0.015
10emb|CR714375.2|CNS0GE5V Tetraodon nigroviridis full-length cDNA 48 0.015
11emb|CR713600.2|CNS0GDKC Tetraodon nigroviridis full-length cDNA 48 0.015
12emb|CR705446.2|CNS0G79U Tetraodon nigroviridis full-length cDNA 48 0.015
13emb|CR704705.2|CNS0G6P9 Tetraodon nigroviridis full-length cDNA 48 0.015
14emb|CR699498.2|CNS0G2OM Tetraodon nigroviridis full-length cDNA 48 0.015
15emb|CR689042.2|CNS0FUM6 Tetraodon nigroviridis full-length cDNA 48 0.015
16emb|CR685219.2|CNS0FRNZ Tetraodon nigroviridis full-length cDNA 48 0.015
17emb|CR679206.2|CNS0FN0Y Tetraodon nigroviridis full-length cDNA 48 0.015
18emb|CR668108.2|CNS0FEHE Tetraodon nigroviridis full-length cDNA 48 0.015
19emb|CR652978.2|CNS0F2T4 Tetraodon nigroviridis full-length cDNA 48 0.015
20emb|CR650750.2|CNS0F138 Tetraodon nigroviridis full-length cDNA 48 0.015
21gb|AE012420.1| Xanthomonas campestris pv. campestris str. ATCC 3... 42 0.92
22gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 42 0.92
23ref|NM_185799.1| Oryza sativa (japonica cultivar-group), predic... 40 3.6
24gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 3.6
25gb|AC167702.2| Reniera sp. JGI-2005 clone JGIBAYC-9C21, complete... 40 3.6
26gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 3.6
27ref|XM_416189.1| PREDICTED: Gallus gallus similar to Histone H1.... 40 3.6
28ref|XM_590970.2| PREDICTED: Bos taurus similar to ryanodine rece... 40 3.6
29gb|AY548452.1| Fremyella diplosiphon clone 3106E11 putative two ... 40 3.6
30gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 3.6
31gb|AC160965.4| Mus musculus BAC clone RP24-334E4 from chromosome... 40 3.6
32gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 3.6
33gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 3.6
34emb|AL136362.10| Human DNA sequence from clone RP13-136L2 on chr... 40 3.6
35emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 3.6
36emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete ... 40 3.6
37gb|AC087341.4| Homo sapiens chromosome 8, clone RP11-381I15, com... 40 3.6
38gb|AE012321.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 3.6
39dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
40dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
41gb|AC010685.3|AC010685 Homo sapiens BAC clone RP11-465A8 from Y,... 40 3.6
42dbj|AP005813.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
43dbj|AP003044.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
44dbj|AP005887.2| Homo sapiens genomic DNA, chromosome 8q24, clone... 40 3.6
45gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 3.6
46gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.6
47emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa... 40 3.6
48gb|M17018.1|CHKH1LH Chicken H1 histone gene lambda-H1.10 (.10 H1... 40 3.6
49gb|M81772.1|ERWBGPA Erwinia chrysanthemi putative antiterminator... 40 3.6 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  115 bits (58), Expect = 8e-23
 Identities = 91/102 (89%)
 Strand = Plus / Plus

                                                                          
Query: 108    catggcgaagaaggcggcggtgatcgccacgctgctggccctgaacctcctcttcttcac 167
              |||||||| ||| || | ||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 198413 catggcgacgaaagctggggtgatcgccacgctcctggccctgaacctccacttcttcac 198472

                                                        
Query: 168    cttcgccgacgcctgcggctgccactgcgggtcctgccctag 209
              |||| ||||||| ||||||||||| ||||| || ||||||||
Sbjct: 198473 cttctccgacgcgtgcggctgccagtgcggctcatgccctag 198514
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>gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0080O10, from chromosome 3, complete sequence
          Length = 127917

 Score =  115 bits (58), Expect = 8e-23
 Identities = 91/102 (89%)
 Strand = Plus / Plus

                                                                         
Query: 108   catggcgaagaaggcggcggtgatcgccacgctgctggccctgaacctcctcttcttcac 167
             |||||||| ||| || | ||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 35480 catggcgacgaaagctggggtgatcgccacgctcctggccctgaacctccacttcttcac 35539

                                                       
Query: 168   cttcgccgacgcctgcggctgccactgcgggtcctgccctag 209
             |||| ||||||| ||||||||||| ||||| || ||||||||
Sbjct: 35540 cttctccgacgcgtgcggctgccagtgcggctcatgccctag 35581
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>gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNAb0079B22, from chromosome 3, complete sequence
          Length = 156933

 Score =  115 bits (58), Expect = 8e-23
 Identities = 91/102 (89%)
 Strand = Plus / Plus

                                                                          
Query: 108    catggcgaagaaggcggcggtgatcgccacgctgctggccctgaacctcctcttcttcac 167
              |||||||| ||| || | ||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 132413 catggcgacgaaagctggggtgatcgccacgctcctggccctgaacctccacttcttcac 132472

                                                        
Query: 168    cttcgccgacgcctgcggctgccactgcgggtcctgccctag 209
              |||| ||||||| ||||||||||| ||||| || ||||||||
Sbjct: 132473 cttctccgacgcgtgcggctgccagtgcggctcatgccctag 132514
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score =  115 bits (58), Expect = 8e-23
 Identities = 91/102 (89%)
 Strand = Plus / Plus

                                                                          
Query: 108    catggcgaagaaggcggcggtgatcgccacgctgctggccctgaacctcctcttcttcac 167
              |||||||| ||| || | ||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 198413 catggcgacgaaagctggggtgatcgccacgctcctggccctgaacctccacttcttcac 198472

                                                        
Query: 168    cttcgccgacgcctgcggctgccactgcgggtcctgccctag 209
              |||| ||||||| ||||||||||| ||||| || ||||||||
Sbjct: 198473 cttctccgacgcgtgcggctgccagtgcggctcatgccctag 198514
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>gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequence
          Length = 162241

 Score =  115 bits (58), Expect = 8e-23
 Identities = 91/102 (89%)
 Strand = Plus / Minus

                                                                         
Query: 108   catggcgaagaaggcggcggtgatcgccacgctgctggccctgaacctcctcttcttcac 167
             |||||||| ||| || | ||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 64243 catggcgacgaaagctggggtgatcgccacgctcctggccctgaacctccacttcttcac 64184

                                                       
Query: 168   cttcgccgacgcctgcggctgccactgcgggtcctgccctag 209
             |||| ||||||| ||||||||||| ||||| || ||||||||
Sbjct: 64183 cttctccgacgcgtgcggctgccagtgcggctcatgccctag 64142
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>dbj|AK063645.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-H06, full
           insert sequence
          Length = 745

 Score =  115 bits (58), Expect = 8e-23
 Identities = 91/102 (89%)
 Strand = Plus / Plus

                                                                       
Query: 108 catggcgaagaaggcggcggtgatcgccacgctgctggccctgaacctcctcttcttcac 167
           |||||||| ||| || | ||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 88  catggcgacgaaagctggggtgatcgccacgctcctggccctgaacctccacttcttcac 147

                                                     
Query: 168 cttcgccgacgcctgcggctgccactgcgggtcctgccctag 209
           |||| ||||||| ||||||||||| ||||| || ||||||||
Sbjct: 148 cttctccgacgcgtgcggctgccagtgcggctcatgccctag 189
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>gb|AY106116.1| Zea mays PCO091367 mRNA sequence
          Length = 842

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                    
Query: 133 gccacgctgctggccctgaacctcctcttcttcaccttcgccgacgcctgcggctgc 189
           ||||| ||||||||||| ||||||||||||||  ||||||||||||| |||||||||
Sbjct: 8   gccactctgctggccctcaacctcctcttctttgccttcgccgacgcatgcggctgc 64
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>emb|CR722992.2|CNS0GKT2 Tetraodon nigroviridis full-length cDNA
          Length = 495

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 94  aggaagaaggaagccatggcgaag 117
           ||||||||||||||||||||||||
Sbjct: 45  aggaagaaggaagccatggcgaag 22
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>emb|CR722982.2|CNS0GKSS Tetraodon nigroviridis full-length cDNA
          Length = 495

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 94  aggaagaaggaagccatggcgaag 117
           ||||||||||||||||||||||||
Sbjct: 45  aggaagaaggaagccatggcgaag 22
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>emb|CR714375.2|CNS0GE5V Tetraodon nigroviridis full-length cDNA
          Length = 495

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 94  aggaagaaggaagccatggcgaag 117
           ||||||||||||||||||||||||
Sbjct: 45  aggaagaaggaagccatggcgaag 22
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>emb|CR713600.2|CNS0GDKC Tetraodon nigroviridis full-length cDNA
          Length = 495

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 94  aggaagaaggaagccatggcgaag 117
           ||||||||||||||||||||||||
Sbjct: 45  aggaagaaggaagccatggcgaag 22
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>emb|CR705446.2|CNS0G79U Tetraodon nigroviridis full-length cDNA
          Length = 495

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 94  aggaagaaggaagccatggcgaag 117
           ||||||||||||||||||||||||
Sbjct: 45  aggaagaaggaagccatggcgaag 22
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>emb|CR704705.2|CNS0G6P9 Tetraodon nigroviridis full-length cDNA
          Length = 496

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 94  aggaagaaggaagccatggcgaag 117
           ||||||||||||||||||||||||
Sbjct: 45  aggaagaaggaagccatggcgaag 22
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>emb|CR699498.2|CNS0G2OM Tetraodon nigroviridis full-length cDNA
          Length = 495

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 94  aggaagaaggaagccatggcgaag 117
           ||||||||||||||||||||||||
Sbjct: 45  aggaagaaggaagccatggcgaag 22
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>emb|CR689042.2|CNS0FUM6 Tetraodon nigroviridis full-length cDNA
          Length = 495

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 94  aggaagaaggaagccatggcgaag 117
           ||||||||||||||||||||||||
Sbjct: 45  aggaagaaggaagccatggcgaag 22
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>emb|CR685219.2|CNS0FRNZ Tetraodon nigroviridis full-length cDNA
          Length = 495

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 94  aggaagaaggaagccatggcgaag 117
           ||||||||||||||||||||||||
Sbjct: 45  aggaagaaggaagccatggcgaag 22
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>emb|CR679206.2|CNS0FN0Y Tetraodon nigroviridis full-length cDNA
          Length = 495

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 94  aggaagaaggaagccatggcgaag 117
           ||||||||||||||||||||||||
Sbjct: 45  aggaagaaggaagccatggcgaag 22
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>emb|CR668108.2|CNS0FEHE Tetraodon nigroviridis full-length cDNA
          Length = 495

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 94  aggaagaaggaagccatggcgaag 117
           ||||||||||||||||||||||||
Sbjct: 45  aggaagaaggaagccatggcgaag 22
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>emb|CR652978.2|CNS0F2T4 Tetraodon nigroviridis full-length cDNA
          Length = 495

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 94  aggaagaaggaagccatggcgaag 117
           ||||||||||||||||||||||||
Sbjct: 45  aggaagaaggaagccatggcgaag 22
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>emb|CR650750.2|CNS0F138 Tetraodon nigroviridis full-length cDNA
          Length = 495

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 94  aggaagaaggaagccatggcgaag 117
           ||||||||||||||||||||||||
Sbjct: 45  aggaagaaggaagccatggcgaag 22
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>gb|AE012420.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 328
            of 460 of the complete genome
          Length = 13708

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 121  gcggcggtgatcgccacgctg 141
            |||||||||||||||||||||
Sbjct: 4736 gcggcggtgatcgccacgctg 4716
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 121     gcggcggtgatcgccacgctg 141
               |||||||||||||||||||||
Sbjct: 1332296 gcggcggtgatcgccacgctg 1332316



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 180     ctgcggctgccactgcgggt 199
               ||||||||||||||||||||
Sbjct: 2379043 ctgcggctgccactgcgggt 2379024
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>ref|NM_185799.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 375

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 177 cgcctgcggctgccactgcg 196
           ||||||||||||||||||||
Sbjct: 366 cgcctgcggctgccactgcg 347
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 121    gcggcggtgatcgccacgct 140
              ||||||||||||||||||||
Sbjct: 929082 gcggcggtgatcgccacgct 929063
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>gb|AC167702.2| Reniera sp. JGI-2005 clone JGIBAYC-9C21, complete sequence
          Length = 38590

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 154  ctcctcttcttcaccttcgc 173
            ||||||||||||||||||||
Sbjct: 4961 ctcctcttcttcaccttcgc 4980
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 111     ggcgaagaaggcggcggtgatcgc 134
               ||||||||||||||||| ||||||
Sbjct: 3344404 ggcgaagaaggcggcggcgatcgc 3344381
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>ref|XM_416189.1| PREDICTED: Gallus gallus similar to Histone H1.10 (Methylated DNA
           binding protein-2-H1) (MDBP-2-H1) (LOC417948), mRNA
          Length = 697

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 100 aaggaagccatggcgaagaaggcggcgg 127
           |||| ||||| |||||||||||||||||
Sbjct: 659 aaggcagccaaggcgaagaaggcggcgg 686
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>ref|XM_590970.2| PREDICTED: Bos taurus similar to ryanodine receptor 1 (skeletal)
            (LOC513307), partial mRNA
          Length = 6741

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 151  aacctcctcttcttcaccttcgcc 174
            |||||||||||||||| |||||||
Sbjct: 5703 aacctcctcttcttcagcttcgcc 5680
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>gb|AY548452.1| Fremyella diplosiphon clone 3106E11 putative two component hybrid
            sensor regulator gene, partial cds; and putative two
            component hybrid sensor kinase, TorS-like protein, and
            RsbS-like protein genes, complete cds
          Length = 5596

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 178  gcctgcggctgccactgcgg 197
            ||||||||||||||||||||
Sbjct: 4321 gcctgcggctgccactgcgg 4302
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 111    ggcgaagaaggcggcggtgatcgc 134
              ||||||||||||||||| ||||||
Sbjct: 642232 ggcgaagaaggcggcggcgatcgc 642255
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>gb|AC160965.4| Mus musculus BAC clone RP24-334E4 from chromosome 1, complete sequence
          Length = 182270

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    tggtaggaagaaggaagcca 109
             ||||||||||||||||||||
Sbjct: 93277 tggtaggaagaaggaagcca 93258
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 126     ggtgatcgccacgctgctgg 145
               ||||||||||||||||||||
Sbjct: 2625787 ggtgatcgccacgctgctgg 2625806
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 110     tggcgaagaaggcggcggtg 129
               ||||||||||||||||||||
Sbjct: 4051888 tggcgaagaaggcggcggtg 4051869
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>emb|AL136362.10| Human DNA sequence from clone RP13-136L2 on chromosome X Contains a
             eukaryotic translation initiation factor 4A, isoform 1
             (EIF4A1) pseudogene, complete sequence
          Length = 135240

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    cagagtgagctctgtctaaa 46
             ||||||||||||||||||||
Sbjct: 35715 cagagtgagctctgtctaaa 35734
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 111    ggcgaagaaggcggcggtgatcgc 134
              ||||||||||||||||| ||||||
Sbjct: 450825 ggcgaagaaggcggcggcgatcgc 450848
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>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29
          Length = 290850

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    ccttcgccgacgcctgcggc 186
              ||||||||||||||||||||
Sbjct: 290253 ccttcgccgacgcctgcggc 290234
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>gb|AC087341.4| Homo sapiens chromosome 8, clone RP11-381I15, complete sequence
          Length = 177835

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 57    gcacagcagctagtgagaggcagg 80
             |||||||||| |||||||||||||
Sbjct: 51184 gcacagcagcaagtgagaggcagg 51207
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>gb|AE012321.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 229
            of 460 of the complete genome
          Length = 10029

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 180  ctgcggctgccactgcgggt 199
            ||||||||||||||||||||
Sbjct: 5534 ctgcggctgccactgcgggt 5553
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 112      gcgaagaaggcggcggtgatcgcc 135
                |||||||||||||||| |||||||
Sbjct: 25872659 gcgaagaaggcggcggcgatcgcc 25872636
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 177     cgcctgcggctgccactgcg 196
               ||||||||||||||||||||
Sbjct: 9355989 cgcctgcggctgccactgcg 9355970
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>gb|AC010685.3|AC010685 Homo sapiens BAC clone RP11-465A8 from Y, complete sequence
          Length = 160302

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     cagagtgagctctgtctaaa 46
              ||||||||||||||||||||
Sbjct: 142114 cagagtgagctctgtctaaa 142133
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>dbj|AP005813.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0676F10
          Length = 142510

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 177    cgcctgcggctgccactgcg 196
              ||||||||||||||||||||
Sbjct: 123330 cgcctgcggctgccactgcg 123311
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>dbj|AP003044.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0038C05
          Length = 152941

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   cgcctgcggctgccactgcg 196
             ||||||||||||||||||||
Sbjct: 84399 cgcctgcggctgccactgcg 84380
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>dbj|AP005887.2| Homo sapiens genomic DNA, chromosome 8q24, clone: KB1252A6, complete
              sequence
          Length = 149431

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 57     gcacagcagctagtgagaggcagg 80
              |||||||||| |||||||||||||
Sbjct: 116607 gcacagcagcaagtgagaggcagg 116630
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 120    ggcggcggtgatcgccacgctgctggcc 147
              ||||||| || |||||||||||||||||
Sbjct: 227339 ggcggcgctgttcgccacgctgctggcc 227366
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 112      gcgaagaaggcggcggtgatcgcc 135
                |||||||||||||||| |||||||
Sbjct: 25800835 gcgaagaaggcggcggcgatcgcc 25800812
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>emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa0018C20 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 137492

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 112   gcgaagaaggcggcggtgatcgcc 135
             |||||||||||||||| |||||||
Sbjct: 94110 gcgaagaaggcggcggcgatcgcc 94087
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>gb|M17018.1|CHKH1LH Chicken H1 histone gene lambda-H1.10 (.10 H1), complete cds and
           promoters
          Length = 1497

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 100 aaggaagccatggcgaagaaggcggcgg 127
           |||| ||||| |||||||||||||||||
Sbjct: 872 aaggcagccaaggcgaagaaggcggcgg 899
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>gb|M81772.1|ERWBGPA Erwinia chrysanthemi putative antiterminator (argG) gene, complete
            cds; beta-glucoside permease (arbF) gene, complete cds;
            phospho- beta-glucosidase (arbB) gene, complete cds;
            unidentified open reading frame, 5' end
          Length = 5065

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 120  ggcggcggtgatcgccacgctgctggcc 147
            |||||||||||||| ||||||| |||||
Sbjct: 2642 ggcggcggtgatcggcacgctgttggcc 2669


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,797,037
Number of Sequences: 3902068
Number of extensions: 1797037
Number of successful extensions: 45791
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45233
Number of HSP's gapped (non-prelim): 558
length of query: 278
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 256
effective length of database: 17,147,199,772
effective search space: 4389683141632
effective search space used: 4389683141632
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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