>TIM50_ARATH (Q8VYE2) Import inner membrane translocase subunit TIM50,|
           mitochondrial precursor
          Length = 376

 Score = 48.9 bits (115), Expect = 5e-06
 Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
 Frame = +1

Query: 232 AYSLAEVDQKTLEFRKEMT-TPIPLAQDASEFEKFRARAYETARKVPVAAIELYLEIRSR 408
           AY++ EV++KT  FR+  T TP+  +      +K++ + Y  A      AI+ YLE+R  
Sbjct: 104 AYTIDEVNEKTKAFRESATKTPVIKSSGIDVIDKYQTKLYSAAMTGSARAIDKYLELREI 163

Query: 409 IEDHVVGFT 435
           +E+ V GFT
Sbjct: 164 VEEQVKGFT 172

>ATG13_ASHGO (Q758N2) Autophagy-related protein 13|
          Length = 659

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +1

Query: 277 KEMTTPIPLAQDASEFEKFRA-RAYETARKVPVAAIELYLEIRSRIEDHVV 426
           ++ T  I  A DA   E  RA  AY+ A+++P   IE++L++R     H V
Sbjct: 38  EDRTFNISSAADAGVAEAVRAWTAYDGAQELPPLVIEMFLDLRRLGPQHTV 88

>TOP1_YEAST (P04786) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
           (Maintenance of killer protein 1)
          Length = 769

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +1

Query: 241 LAEVDQKTLEFRKEMTT-PIPLAQDASEFEKFRARAYETARKVPVAAIEL 387
           L +VD+K  EF KE+ T  + L    +  EK +A+  +  +++  ++I+L
Sbjct: 660 LEKVDEKKQEFEKELKTGEVELKSSWNSVEKIKAQVEKLEQRIQTSSIQL 709

>NU192_YEAST (P47054) Nucleoporin NUP192 (Nuclear pore protein NUP192)|
          Length = 1683

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 14/54 (25%), Positives = 30/54 (55%)
 Frame = +1

Query: 262 TLEFRKEMTTPIPLAQDASEFEKFRARAYETARKVPVAAIELYLEIRSRIEDHV 423
           T++F+ ++  P+  A +    E+    A +T+      ++EL+ +IRS +E H+
Sbjct: 299 TMDFKTDVDEPMTSAVELGAIEQILIFAADTSIVEQDKSMELFYDIRSLLERHI 352

>YUAG_BACSU (O32076) Hypothetical protein yuaG|
          Length = 509

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = +1

Query: 232 AYSLAEVDQ----KTLEFRKEMTTPIPLAQDASEFEKFRARAYETARKVPVAAIELYLEI 399
           A  +AE ++    K  EFR+E  T    A  A + E  RAR   T +++ V  IE   +I
Sbjct: 241 ATEIAEAEKINQLKMAEFRREQDTAKANADQAYDLETARARQQVTEQEMQVKIIERQKQI 300


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,093,329
Number of Sequences: 219361
Number of extensions: 465352
Number of successful extensions: 1179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)