Clone Information

BLAST Search Result

Clone Name	bast56b04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	UB12L_ARATH (Q9ZU75) Probable NEDD8-conjugating enzyme Ubc12-lik...	138	7e-33
2	UBC12_ARATH (Q9SDY5) NEDD8-conjugating enzyme Ubc12 (EC 6.3.2.-)...	138	9e-33
3	UBC12_XENLA (Q6DCZ9) NEDD8-conjugating enzyme Ubc12 (EC 6.3.2.-)...	98	1e-20
4	UBC12_XENTR (Q6P8D9) NEDD8-conjugating enzyme Ubc12 (EC 6.3.2.-)...	97	2e-20
5	UBC12_MOUSE (P61082) NEDD8-conjugating enzyme Ubc12 (EC 6.3.2.-)...	96	7e-20
6	UBC12_HUMAN (P61081) NEDD8-conjugating enzyme Ubc12 (EC 6.3.2.-)...	96	7e-20
7	UBC12_YARLI (Q6C9W0) NEDD8-conjugating enzyme UBC12 (EC 6.3.2.-)...	94	2e-19
8	UBC12_DROME (Q9VSF3) NEDD8-conjugating enzyme Ubc12 (EC 6.3.2.-)...	88	1e-17
9	UBC12_SCHPO (O74549) NEDD8-conjugating enzyme ubc12 (EC 6.3.2.-)...	68	1e-11
10	UBC12_CANGA (Q6FVQ8) NEDD8-conjugating enzyme UBC12 (EC 6.3.2.-)...	64	3e-10
11	UBC12_YEAST (P52491) NEDD8-conjugating enzyme UBC12 (EC 6.3.2.-)...	52	6e-07
12	UBC12_ASHGO (Q75AF2) NEDD8-conjugating enzyme UBC12 (EC 6.3.2.-)...	47	3e-05
13	UBC12_KLULA (Q6CSW8) NEDD8-conjugating enzyme UBC12 (EC 6.3.2.-)...	41	0.001
14	UBC10_ARATH (P35133) Ubiquitin-conjugating enzyme E2-17 kDa 10/1...	37	0.028
15	UB2D2_XENLA (P62840) Ubiquitin-conjugating enzyme E2 D2 (EC 6.3....	35	0.081
16	UB2D2_RAT (P62839) Ubiquitin-conjugating enzyme E2 D2 (EC 6.3.2....	35	0.081
17	UB2D2_MOUSE (P62838) Ubiquitin-conjugating enzyme E2 D2 (EC 6.3....	35	0.081
18	UB2D2_HUMAN (P62837) Ubiquitin-conjugating enzyme E2 D2 (EC 6.3....	35	0.081
19	UB2D4_RAT (P70711) Ubiquitin-conjugating enzyme E2 D4 (EC 6.3.2....	35	0.11
20	UBC11_ARATH (P35134) Ubiquitin-conjugating enzyme E2-17 kDa 11 (...	35	0.14
21	UBC4_LYCES (P35135) Ubiquitin-conjugating enzyme E2-17 kDa (EC 6...	34	0.24
22	UBC12_CAEEL (Q9XVK5) NEDD8-conjugating enzyme ubc-12 (EC 6.3.2.-...	33	0.40
23	UBC11_SCHPO (O00103) Ubiquitin-conjugating enzyme E2-20 kDa (EC ...	33	0.40
24	UBC4_SCHPO (P46595) Ubiquitin-conjugating enzyme E2 4 (EC 6.3.2....	33	0.40
25	UBC4_YEAST (P15731) Ubiquitin-conjugating enzyme E2 4 (EC 6.3.2....	33	0.53
26	UBC2_ARATH (P42745) Ubiquitin-conjugating enzyme E2-17 kDa 2 (EC...	32	0.90
27	UBC1_ARATH (P25865) Ubiquitin-conjugating enzyme E2-17 kDa 1 (EC...	32	0.90
28	UBC2_MEDSA (P35130) Ubiquitin-conjugating enzyme E2-17 kDa (EC 6...	32	1.2
29	UBC1_MAGGR (Q9UVR2) Ubiquitin-conjugating enzyme E2-16 kDa (EC 6...	32	1.2
30	UBC4_CANAL (P43102) Ubiquitin-conjugating enzyme E2 4 (EC 6.3.2....	31	1.5
31	UBC1_COLGL (O74196) Ubiquitin-conjugating enzyme E2-16 kDa (EC 6...	31	2.0
32	UBC5_YEAST (P15732) Ubiquitin-conjugating enzyme E2-16 kDa (EC 6...	30	2.6
33	UBC1_CAEEL (P52478) Ubiquitin-conjugating enzyme E2 1 (EC 6.3.2....	30	2.6
34	UBC2_WHEAT (P25866) Ubiquitin-conjugating enzyme E2-17 kDa (EC 6...	30	3.4
35	PNRC1_HUMAN (Q12796) Proline-rich nuclear receptor coactivator 1...	29	7.6
36	UBC_ASFM2 (P25869) Ubiquitin-conjugating enzyme E2-21 kDa (EC 6....	29	7.6
37	APA_MYCAV (Q48919) Alanine and proline-rich secreted protein apa...	29	7.6
38	UBC3_ARATH (P42746) Ubiquitin-conjugating enzyme E2-17 kDa 3 (EC...	28	9.9
39	WASF2_MOUSE (Q8BH43) Wiskott-Aldrich syndrome protein family mem...	28	9.9

>UB12L_ARATH (Q9ZU75) Probable NEDD8-conjugating enzyme Ubc12-like (EC 6.3.2.-)|
           (RUB1-conjugating enzyme 2) (RUB1-protein ligase 2)
           (RUB1 carrier protein 2)
          Length = 185

 Score =  138 bits (348), Expect = 7e-33
 Identities = 68/105 (64%), Positives = 83/105 (79%), Gaps = 3/105 (2%)
 Frame = +2

Query: 170 MINLFKIKGQKKEEAANSNG--GPPVKKQSPGELRLHKDIAELNLPKTTKISFPNGKDDL 343
           MI LFK+K +++EE+ ++NG     VKKQS GELRLHKDI+ELNLPK+ KISFPNGK+DL
Sbjct: 1   MIGLFKVKEKQREESQSNNGRGASTVKKQSAGELRLHKDISELNLPKSCKISFPNGKNDL 60

Query: 344 MNFEATLRPDEGYYLGGSFTFTFQVSPSYPHEAPRSSAD*G-YHP 475
           MNFE T++PDEGYYL G+F F+FQVS  YPHEAP+       YHP
Sbjct: 61  MNFEVTIKPDEGYYLSGNFVFSFQVSNMYPHEAPKVKCKTKVYHP 105

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>UBC12_ARATH (Q9SDY5) NEDD8-conjugating enzyme Ubc12 (EC 6.3.2.-)|
           (RUB1-conjugating enzyme 1) (RUB1-protein ligase 1)
           (RUB1 carrier protein 1)
          Length = 184

 Score =  138 bits (347), Expect = 9e-33
 Identities = 67/104 (64%), Positives = 81/104 (77%), Gaps = 2/104 (1%)
 Frame = +2

Query: 170 MINLFKIKGQKKEEAANSN-GGPPVKKQSPGELRLHKDIAELNLPKTTKISFPNGKDDLM 346
           MI LFK+K +++E+A N+  GG  VKKQS GELRLHKDI+ELNLP +  ISFPNGKDDLM
Sbjct: 1   MIGLFKVKEKQREQAQNATRGGASVKKQSAGELRLHKDISELNLPSSCSISFPNGKDDLM 60

Query: 347 NFEATLRPDEGYYLGGSFTFTFQVSPSYPHEAPRSSAD*G-YHP 475
           NFE +++PD+GYY  G+F FTFQVSP YPHEAP+       YHP
Sbjct: 61  NFEVSIKPDDGYYHNGTFVFTFQVSPVYPHEAPKVKCKTKVYHP 104

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>UBC12_XENLA (Q6DCZ9) NEDD8-conjugating enzyme Ubc12 (EC 6.3.2.-)|
           (Ubiquitin-conjugating enzyme E2 M) (NEDD8 protein
           ligase) (NEDD8 carrier protein)
          Length = 183

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 50/103 (48%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
 Frame = +2

Query: 170 MINLFKIKGQKKEEAANSNGGPPVKKQSPGELRLHKDIAELNLPKTTKISFPNGKDDLMN 349
           MI LF +K QKKEE +        KK S  +LR+ KDI ELNLPKT +I F +  DDL+N
Sbjct: 1   MIKLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDITELNLPKTCEIEFSD-HDDLLN 59

Query: 350 FEATLRPDEGYYLGGSFTFTFQVSPSYPHEAPRSSAD-*GYHP 475
           F+  + PDEG+Y GG F F+F+V   YPH+ P+   +   YHP
Sbjct: 60  FKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHP 102

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>UBC12_XENTR (Q6P8D9) NEDD8-conjugating enzyme Ubc12 (EC 6.3.2.-)|
           (Ubiquitin-conjugating enzyme E2 M) (NEDD8 protein
           ligase) (NEDD8 carrier protein)
          Length = 183

 Score = 97.1 bits (240), Expect = 2e-20
 Identities = 50/103 (48%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
 Frame = +2

Query: 170 MINLFKIKGQKKEEAANSNGGPPVKKQSPGELRLHKDIAELNLPKTTKISFPNGKDDLMN 349
           MI LF +K QKKEE +        KK S  +LR+ KDI ELNLPKT +I F +  DDL+N
Sbjct: 1   MIKLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINELNLPKTCEIEFSD-HDDLLN 59

Query: 350 FEATLRPDEGYYLGGSFTFTFQVSPSYPHEAPRSSAD-*GYHP 475
           F+  + PDEG+Y GG F F+F+V   YPH+ P+   +   YHP
Sbjct: 60  FKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHP 102

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>UBC12_MOUSE (P61082) NEDD8-conjugating enzyme Ubc12 (EC 6.3.2.-)|
           (Ubiquitin-conjugating enzyme E2 M) (NEDD8 protein
           ligase) (NEDD8 carrier protein)
          Length = 183

 Score = 95.5 bits (236), Expect = 7e-20
 Identities = 50/103 (48%), Positives = 64/103 (62%), Gaps = 1/103 (0%)
 Frame = +2

Query: 170 MINLFKIKGQKKEEAANSNGGPPVKKQSPGELRLHKDIAELNLPKTTKISFPNGKDDLMN 349
           MI LF +K QKKEE +        KK S  +LR+ KDI ELNLPKT  ISF +  DDL+N
Sbjct: 1   MIKLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISF-SDPDDLLN 59

Query: 350 FEATLRPDEGYYLGGSFTFTFQVSPSYPHEAPRSSAD-*GYHP 475
           F+  + PDEG+Y  G F F+F+V   YPH+ P+   +   YHP
Sbjct: 60  FKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHP 102

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>UBC12_HUMAN (P61081) NEDD8-conjugating enzyme Ubc12 (EC 6.3.2.-)|
           (Ubiquitin-conjugating enzyme E2 M) (NEDD8 protein
           ligase) (NEDD8 carrier protein)
          Length = 183

 Score = 95.5 bits (236), Expect = 7e-20
 Identities = 50/103 (48%), Positives = 64/103 (62%), Gaps = 1/103 (0%)
 Frame = +2

Query: 170 MINLFKIKGQKKEEAANSNGGPPVKKQSPGELRLHKDIAELNLPKTTKISFPNGKDDLMN 349
           MI LF +K QKKEE +        KK S  +LR+ KDI ELNLPKT  ISF +  DDL+N
Sbjct: 1   MIKLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISF-SDPDDLLN 59

Query: 350 FEATLRPDEGYYLGGSFTFTFQVSPSYPHEAPRSSAD-*GYHP 475
           F+  + PDEG+Y  G F F+F+V   YPH+ P+   +   YHP
Sbjct: 60  FKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHP 102

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>UBC12_YARLI (Q6C9W0) NEDD8-conjugating enzyme UBC12 (EC 6.3.2.-)|
           (RUB1-conjugating enzyme) (RUB1-protein ligase)
           (Ubiquitin carrier protein 12)
          Length = 179

 Score = 94.0 bits (232), Expect = 2e-19
 Identities = 47/100 (47%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
 Frame = +2

Query: 179 LFKIKGQKKEEAANSNGGPPVKKQSPGELRLHKDIAELNLPKTTKISFPNGKDDLMNFEA 358
           + KI   K+++AA   GG   KK +  +LR+ KD++EL+LP T K  FP+  +D+MNFE 
Sbjct: 1   MLKIWSMKEKQAAE--GGSAKKKVTAAQLRVQKDLSELSLPSTMKTHFPSA-EDIMNFEL 57

Query: 359 TLRPDEGYYLGGSFTFTFQVSPSYPHEAPR-SSAD*GYHP 475
           T+RPDEG+Y GG F F+F V+P++PHE P+       YHP
Sbjct: 58  TVRPDEGFYQGGEFRFSFYVNPNFPHEPPKVKCLQKVYHP 97

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>UBC12_DROME (Q9VSF3) NEDD8-conjugating enzyme Ubc12 (EC 6.3.2.-) (NEDD8 protein|
           ligase) (NEDD8 carrier protein)
          Length = 181

 Score = 88.2 bits (217), Expect = 1e-17
 Identities = 48/103 (46%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
 Frame = +2

Query: 170 MINLFKIKGQKKEEAANSNGGPPVKKQSPGELRLHKDIAELNLPKTTKISFPNGKDDLMN 349
           MI LF +K QKK+       G   KK S  +LR+ KDI ELNLP T    FP+  +DL+N
Sbjct: 1   MIKLFTLKQQKKD---GEQKGSQQKKASAAQLRIQKDINELNLPNTCATDFPD-PNDLLN 56

Query: 350 FEATLRPDEGYYLGGSFTFTFQVSPSYPHEAPR-SSAD*GYHP 475
           F+  + PDEG+Y  G F F F+V  +YPHE P+   A   YHP
Sbjct: 57  FKLIISPDEGFYRDGRFVFNFRVGSNYPHEPPKVKCATQVYHP 99

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>UBC12_SCHPO (O74549) NEDD8-conjugating enzyme ubc12 (EC 6.3.2.-)|
           (RUB1-conjugating enzyme) (RUB1-protein ligase)
           (Ubiquitin carrier protein 12)
          Length = 177

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 2/99 (2%)
 Frame = +2

Query: 185 KIKGQKKEEAANSNGGPPVKKQSPGELRLHKDIAELNLPKTTKISFPNG-KDDLMNFEAT 361
           KI   KK+EA        +   SP ++R+ KD+ +L +P T   S+P+  K ++++ E  
Sbjct: 3   KIWELKKKEAQKEKNASGI---SPAQIRIQKDVTDLEIPSTMSTSWPDPIKLNVLHLE-- 57

Query: 362 LRPDEGYYLGGSFTFTFQVSPSYPHEAPR-SSAD*GYHP 475
           +RPDEGYY GG F F  Q+  +YPH+ P+    +  YHP
Sbjct: 58  IRPDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHP 96

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>UBC12_CANGA (Q6FVQ8) NEDD8-conjugating enzyme UBC12 (EC 6.3.2.-)|
           (RUB1-conjugating enzyme) (RUB1-protein ligase)
           (Ubiquitin carrier protein 12)
          Length = 187

 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 40/100 (40%), Positives = 56/100 (56%), Gaps = 7/100 (7%)
 Frame = +2

Query: 170 MINLFKIKGQKKEEAANSNGGPPVKKQ----SPGELRLHKDIAELNLPKTTK---ISFPN 328
           M+ L +++ QK+++ A  N G  VK      SP +LRL KDI EL LP T +   IS  N
Sbjct: 1   MLKLRQLQQQKQQQLAK-NAGSSVKANTNSTSPAKLRLQKDIEELELPPTVRVNIISLDN 59

Query: 329 GKDDLMNFEATLRPDEGYYLGGSFTFTFQVSPSYPHEAPR 448
            K+  M+    + PDEG+Y GG F FT     +YP + P+
Sbjct: 60  HKE--MSLNIIIIPDEGFYKGGKFRFTATFLETYPIDPPK 97

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>UBC12_YEAST (P52491) NEDD8-conjugating enzyme UBC12 (EC 6.3.2.-)|
           (RUB1-conjugating enzyme) (RUB1-protein ligase)
           (Ubiquitin carrier protein 12)
          Length = 188

 Score = 52.4 bits (124), Expect = 6e-07
 Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
 Frame = +2

Query: 197 QKKEEAANSNGGPPVKKQSPGELRLHKDIAELNLPKTTK---ISFPNGKDDLMN--FEAT 361
           QKK++  N N        S   +RL +D+  L+LP T     I+ P+  D   +   E  
Sbjct: 8   QKKKQKENENSSSIQPNLSAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVI 67

Query: 362 LRPDEGYYLGGSFTFTFQVSPSYPHEAPR 448
           +RPDEGYY  GS  F    +  YP E P+
Sbjct: 68  VRPDEGYYNYGSINFNLDFNEVYPIEPPK 96

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>UBC12_ASHGO (Q75AF2) NEDD8-conjugating enzyme UBC12 (EC 6.3.2.-)|
           (RUB1-conjugating enzyme) (RUB1-protein ligase)
           (Ubiquitin carrier protein 12)
          Length = 184

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
 Frame = +2

Query: 170 MINLFKIKGQKKEEAANSNGGPPVKKQ-SPGELRLHKDIAELNLPKTTKISFPN-GKDDL 343
           M+ L +++ +K+ +AA +      +   SP +LR+ KD+A L LP T  +     G ++ 
Sbjct: 1   MLKLRQLQKEKQRQAAQAQAPAQGRSAASPAQLRVEKDLATLELPTTVTLDTKCLGSENK 60

Query: 344 MNFEATLRPDEGYYLGGSFTFTFQVSPSYPHEAP 445
           +     + P+EG Y GG F F+     +YP E P
Sbjct: 61  VYLR--ISPEEGVYRGGHFRFSVVFRDTYPIEPP 92

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>UBC12_KLULA (Q6CSW8) NEDD8-conjugating enzyme UBC12 (EC 6.3.2.-)|
           (RUB1-conjugating enzyme) (RUB1-protein ligase)
           (Ubiquitin carrier protein 12)
          Length = 184

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 24/82 (29%), Positives = 38/82 (46%)
 Frame = +2

Query: 200 KKEEAANSNGGPPVKKQSPGELRLHKDIAELNLPKTTKISFPNGKDDLMNFEATLRPDEG 379
           K +E       P V K  P  +RL KD+  ++L +          ++ M     ++PD G
Sbjct: 13  KAKEGQGQETTPQVIK--PSLIRLKKDLENIDLSEQICEYTTYLDENPMRVNLAIKPDIG 70

Query: 380 YYLGGSFTFTFQVSPSYPHEAP 445
           YY GG++ F   +  +YP E P
Sbjct: 71  YYAGGTYYFNVFIKDTYPMEPP 92

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>UBC10_ARATH (P35133) Ubiquitin-conjugating enzyme E2-17 kDa 10/12 (EC 6.3.2.19)|
           (Ubiquitin-protein ligase 10/12) (Ubiquitin carrier
           protein 10/12)
          Length = 148

 Score = 37.0 bits (84), Expect = 0.028
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +2

Query: 266 RLHKDIAELNLPKTTKISFPNGKDDLMNFEATLR-PDEGYYLGGSFTFTFQVSPSYPHEA 442
           R+ K++ +L     T  S     +D+ +++AT+  P E  Y GG F  T    P YP + 
Sbjct: 5   RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKP 64

Query: 443 PR 448
           P+
Sbjct: 65  PK 66

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>UB2D2_XENLA (P62840) Ubiquitin-conjugating enzyme E2 D2 (EC 6.3.2.19)|
           (Ubiquitin-protein ligase D2) (Ubiquitin carrier protein
           D2) (Xubc4)
          Length = 147

 Score = 35.4 bits (80), Expect = 0.081
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +2

Query: 266 RLHKDIAELNLPKTTKISFPNGKDDLMNFEATLR-PDEGYYLGGSFTFTFQVSPSYPHEA 442
           R+HK++ +L      + S     DD+ +++AT+  P++  Y GG F  T      YP + 
Sbjct: 5   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64

Query: 443 PR 448
           P+
Sbjct: 65  PK 66

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>UB2D2_RAT (P62839) Ubiquitin-conjugating enzyme E2 D2 (EC 6.3.2.19)|
           (Ubiquitin-protein ligase D2) (Ubiquitin carrier protein
           D2) (Ubiquitin-conjugating enzyme E2-17 kDa 2) (E2(17)KB
           2)
          Length = 147

 Score = 35.4 bits (80), Expect = 0.081
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +2

Query: 266 RLHKDIAELNLPKTTKISFPNGKDDLMNFEATLR-PDEGYYLGGSFTFTFQVSPSYPHEA 442
           R+HK++ +L      + S     DD+ +++AT+  P++  Y GG F  T      YP + 
Sbjct: 5   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64

Query: 443 PR 448
           P+
Sbjct: 65  PK 66

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>UB2D2_MOUSE (P62838) Ubiquitin-conjugating enzyme E2 D2 (EC 6.3.2.19)|
           (Ubiquitin-protein ligase D2) (Ubiquitin carrier protein
           D2) (Ubiquitin-conjugating enzyme E2-17 kDa 2) (E2(17)KB
           2)
          Length = 147

 Score = 35.4 bits (80), Expect = 0.081
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +2

Query: 266 RLHKDIAELNLPKTTKISFPNGKDDLMNFEATLR-PDEGYYLGGSFTFTFQVSPSYPHEA 442
           R+HK++ +L      + S     DD+ +++AT+  P++  Y GG F  T      YP + 
Sbjct: 5   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64

Query: 443 PR 448
           P+
Sbjct: 65  PK 66

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>UB2D2_HUMAN (P62837) Ubiquitin-conjugating enzyme E2 D2 (EC 6.3.2.19)|
           (Ubiquitin-protein ligase D2) (Ubiquitin carrier protein
           D2) (Ubiquitin-conjugating enzyme E2-17 kDa 2) (E2(17)KB
           2)
          Length = 147

 Score = 35.4 bits (80), Expect = 0.081
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +2

Query: 266 RLHKDIAELNLPKTTKISFPNGKDDLMNFEATLR-PDEGYYLGGSFTFTFQVSPSYPHEA 442
           R+HK++ +L      + S     DD+ +++AT+  P++  Y GG F  T      YP + 
Sbjct: 5   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64

Query: 443 PR 448
           P+
Sbjct: 65  PK 66

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>UB2D4_RAT (P70711) Ubiquitin-conjugating enzyme E2 D4 (EC 6.3.2.19)|
           (Ubiquitin-protein ligase D4) (Ubiquitin carrier protein
           D4) (Ubiquitin-conjugating enzyme E2-17 kDa 4) (E2(17)KB
           4)
          Length = 147

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +2

Query: 266 RLHKDIAELNLPKTTKISFPNGKDDLMNFEATLR-PDEGYYLGGSFTFTFQVSPSYPHEA 442
           R+HK++ +L      + S     +D+ +++AT+  P++  Y GG+F  T      YP + 
Sbjct: 5   RIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKP 64

Query: 443 PR 448
           P+
Sbjct: 65  PK 66

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>UBC11_ARATH (P35134) Ubiquitin-conjugating enzyme E2-17 kDa 11 (EC 6.3.2.19)|
           (Ubiquitin-protein ligase 11) (Ubiquitin carrier protein
           11)
          Length = 148

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = +2

Query: 266 RLHKDIAELNLPKTTKISFPNGKDDLMNFEATLR-PDEGYYLGGSFTFTFQVSPSYPHEA 442
           R+ K++ +L     +  S     +D+ +++AT+  P E  Y GG F  +    P YP + 
Sbjct: 5   RILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKP 64

Query: 443 PR-SSAD*GYHP 475
           P+ S     YHP
Sbjct: 65  PKVSFKTKVYHP 76

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>UBC4_LYCES (P35135) Ubiquitin-conjugating enzyme E2-17 kDa (EC 6.3.2.19)|
           (Ubiquitin-protein ligase) (Ubiquitin carrier protein)
          Length = 148

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +2

Query: 266 RLHKDIAELNLPKTTKISFPNGKDDLMNFEATLR-PDEGYYLGGSFTFTFQVSPSYPHEA 442
           R+ K++ +L     T  S     +D+ +++AT+  P +  Y GG F  +    P YP + 
Sbjct: 5   RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKP 64

Query: 443 PR 448
           P+
Sbjct: 65  PK 66

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>UBC12_CAEEL (Q9XVK5) NEDD8-conjugating enzyme ubc-12 (EC 6.3.2.-) (NEDD8|
           protein ligase) (NEDD8 carrier protein)
           (Ubiquitin-conjugating enzyme E2 12)
          Length = 180

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 341 LMNFEATLRPDEGYYLGGSFTFTFQVSPSYPHEAP 445
           L   E T+ P EG Y GG F F   V P Y +  P
Sbjct: 58  LHELELTVTPQEGIYRGGKFRFKITVPPEYNNVPP 92

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>UBC11_SCHPO (O00103) Ubiquitin-conjugating enzyme E2-20 kDa (EC 6.3.2.19)|
           (Ubiquitin-protein ligase) (Ubiquitin carrier protein)
          Length = 176

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +2

Query: 266 RLHKDIAELNLPKTTKIS-FPNGKDDLMNFEATLR-PDEGYYLGGSFTFTFQVSPSYPHE 439
           RL  ++  L +  T  IS FP+   +L+++  T+  P + YY G  F  +     +YP+ 
Sbjct: 32  RLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYS 91

Query: 440 AP 445
            P
Sbjct: 92  PP 93

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>UBC4_SCHPO (P46595) Ubiquitin-conjugating enzyme E2 4 (EC 6.3.2.19)|
           (Ubiquitin-protein ligase 4) (Ubiquitin carrier protein
           4)
          Length = 147

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +2

Query: 266 RLHKDIAELNLPKTTKISFPNGKDDLMNFEATLR-PDEGYYLGGSFTFTFQVSPSYPHEA 442
           R+++++A+L     +  S     DDL +++AT+  P +  Y GG F  +      YP + 
Sbjct: 5   RINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKP 64

Query: 443 PR 448
           P+
Sbjct: 65  PK 66

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>UBC4_YEAST (P15731) Ubiquitin-conjugating enzyme E2 4 (EC 6.3.2.19)|
           (Ubiquitin-protein ligase 4) (Ubiquitin carrier protein
           4)
          Length = 148

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = +2

Query: 266 RLHKDIAELNLPKTTKISFPNGKDDLMNFEATLR-PDEGYYLGGSFTFTFQVSPSYPHEA 442
           R+ K++++L     T  S     DDL +++A++  P +  Y GG F  +      YP + 
Sbjct: 6   RIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKP 65

Query: 443 PR-SSAD*GYHP 475
           P+ S     YHP
Sbjct: 66  PKISFTTKIYHP 77

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>UBC2_ARATH (P42745) Ubiquitin-conjugating enzyme E2-17 kDa 2 (EC 6.3.2.19)|
           (Ubiquitin-protein ligase 2) (Ubiquitin carrier protein
           2)
          Length = 152

 Score = 32.0 bits (71), Expect = 0.90
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 251 SPGELRLHKDIAELNLPKTTKISFPNGKDDLMNFEATL-RPDEGYYLGGSFTFTFQVSPS 427
           +P   RL +D   L       IS     +++M + A +  PD+  + GG+F  + Q S  
Sbjct: 3   TPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSED 62

Query: 428 YPHEAP 445
           YP++ P
Sbjct: 63  YPNKPP 68

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>UBC1_ARATH (P25865) Ubiquitin-conjugating enzyme E2-17 kDa 1 (EC 6.3.2.19)|
           (Ubiquitin-protein ligase 1) (Ubiquitin carrier protein
           1)
          Length = 152

 Score = 32.0 bits (71), Expect = 0.90
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 251 SPGELRLHKDIAELNLPKTTKISFPNGKDDLMNFEATL-RPDEGYYLGGSFTFTFQVSPS 427
           +P   RL +D   L       IS     +++M + A +  PD+  + GG+F  + Q S  
Sbjct: 3   TPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSED 62

Query: 428 YPHEAP 445
           YP++ P
Sbjct: 63  YPNKPP 68

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>UBC2_MEDSA (P35130) Ubiquitin-conjugating enzyme E2-17 kDa (EC 6.3.2.19)|
           (Ubiquitin-protein ligase) (Ubiquitin carrier protein)
          Length = 152

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 251 SPGELRLHKDIAELNLPKTTKISFPNGKDDLMNFEATL-RPDEGYYLGGSFTFTFQVSPS 427
           +P   RL +D   L       IS     +++M + A +  PD+  + GG+F  + Q S  
Sbjct: 3   TPARKRLMRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSED 62

Query: 428 YPHEAP 445
           YP++ P
Sbjct: 63  YPNKPP 68

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>UBC1_MAGGR (Q9UVR2) Ubiquitin-conjugating enzyme E2-16 kDa (EC 6.3.2.19)|
           (Ubiquitin-protein ligase) (Ubiquitin carrier protein)
          Length = 147

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 266 RLHKDIAELNLPKTTKISFPNGKDDLMNFEATLR-PDEGYYLGGSFTFTFQVSPSYPHEA 442
           R++K++ +L     +  S     +DL +++AT+  P +  Y GG F         YP + 
Sbjct: 5   RINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKP 64

Query: 443 PR 448
           P+
Sbjct: 65  PK 66

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>UBC4_CANAL (P43102) Ubiquitin-conjugating enzyme E2 4 (EC 6.3.2.19)|
           (Ubiquitin-protein ligase 4) (Ubiquitin carrier protein
           4)
          Length = 147

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +2

Query: 266 RLHKDIAELNLPKTTKISFPNGKDDLMNFEATLR-PDEGYYLGGSFTFTFQVSPSYPHEA 442
           R++K++++L     +  S     DDL +++A++  P +  Y GG F  +      YP + 
Sbjct: 5   RINKELSDLGRDPPSSCSAGPVGDDLYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKP 64

Query: 443 PRSSAD*G-YHP 475
           P+ +     YHP
Sbjct: 65  PKIALTTKIYHP 76

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>UBC1_COLGL (O74196) Ubiquitin-conjugating enzyme E2-16 kDa (EC 6.3.2.19)|
           (Ubiquitin-protein ligase) (Ubiquitin carrier protein)
           (Colletotrichum hard-surface-induced protein 1)
          Length = 147

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 266 RLHKDIAELNLPKTTKISFPNGKDDLMNFEATLR-PDEGYYLGGSFTFTFQVSPSYPHEA 442
           R++K++ +L     +  S     +DL +++AT+  P +  Y GG F         YP + 
Sbjct: 5   RINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKP 64

Query: 443 PR 448
           P+
Sbjct: 65  PK 66

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>UBC5_YEAST (P15732) Ubiquitin-conjugating enzyme E2-16 kDa (EC 6.3.2.19)|
           (Ubiquitin-protein ligase) (Ubiquitin carrier protein)
          Length = 148

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 266 RLHKDIAELNLPKTTKISFPNGKDDLMNFEATLR-PDEGYYLGGSFTFTFQVSPSYPHEA 442
           R+ K++++L        S     DDL +++A++  P +  Y GG F  +      YP + 
Sbjct: 6   RIAKELSDLGRDPPASCSAGPVGDDLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKP 65

Query: 443 PR 448
           P+
Sbjct: 66  PK 67

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>UBC1_CAEEL (P52478) Ubiquitin-conjugating enzyme E2 1 (EC 6.3.2.19)|
           (Ubiquitin-protein ligase 1) (Ubiquitin carrier protein
           1)
          Length = 192

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +2

Query: 251 SPGELRLHKDIAELNLPKTTKISFPNGKDDLMNFEATL-RPDEGYYLGGSFTFTFQVSPS 427
           +P   RL +D  +L       +S    +D+++ +EA +  P E  +  G+F  + + +  
Sbjct: 3   TPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEE 62

Query: 428 YPHEAP 445
           YP++ P
Sbjct: 63  YPNKPP 68

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>UBC2_WHEAT (P25866) Ubiquitin-conjugating enzyme E2-17 kDa (EC 6.3.2.19)|
           (Ubiquitin-protein ligase) (Ubiquitin carrier protein)
          Length = 152

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 251 SPGELRLHKDIAELNLPKTTKISFPNGKDDLMNFEATL-RPDEGYYLGGSFTFTFQVSPS 427
           +P   RL +D   L       IS     +++  + A +  PD+  + GG+F  T Q +  
Sbjct: 3   TPARKRLMRDFKRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTED 62

Query: 428 YPHEAP 445
           YP++ P
Sbjct: 63  YPNKPP 68

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>PNRC1_HUMAN (Q12796) Proline-rich nuclear receptor coactivator 1 (Proline-rich|
           protein 2) (B4-2 protein)
          Length = 327

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = +2

Query: 236 PVKKQSPGELRLHKDIAELNLPKTTKISFPNGK 334
           P++  +PG+  L K++ +  + K+ KI+ P+G+
Sbjct: 166 PLRPAAPGQTPLRKEVLKSKMGKSEKIALPHGQ 198

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>UBC_ASFM2 (P25869) Ubiquitin-conjugating enzyme E2-21 kDa (EC 6.3.2.19)|
           (Ubiquitin-protein ligase) (Ubiquitin carrier protein)
          Length = 213

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 332 KDDLMNFEATLR-PDEGYYLGGSFTFTFQVSPSYPHEAPR 448
           +D+L  ++  L+ P +  Y GG F       P YP+E PR
Sbjct: 27  EDNLTEWDVILKGPPDTLYEGGLFKAKIVFPPKYPYEPPR 66

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>APA_MYCAV (Q48919) Alanine and proline-rich secreted protein apa precursor|
           (45/47 kDa antigen) (Fibronectin attachment protein)
           (FAP-A)
          Length = 381

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +3

Query: 3   RERARSPTDRPTDLGFAPPRRSPPAEDQGRPRP 101
           R R   PT  P   G APP  +PPA   G P P
Sbjct: 87  RRRRMIPTRAPPPAG-APPNGAPPAAPNGAPPP 118

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>UBC3_ARATH (P42746) Ubiquitin-conjugating enzyme E2-17 kDa 3 (EC 6.3.2.19)|
           (Ubiquitin-protein ligase 3) (Ubiquitin carrier protein
           3)
          Length = 150

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 251 SPGELRLHKDIAELNLPKTTKISFPNGKDDLMNFEATL-RPDEGYYLGGSFTFTFQVSPS 427
           +P + RL  D   L       IS     +++M++ A +  P++  + GG+F  T   +  
Sbjct: 3   TPAKKRLMWDFKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTED 62

Query: 428 YPHEAP 445
           YP++ P
Sbjct: 63  YPNKPP 68

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>WASF2_MOUSE (Q8BH43) Wiskott-Aldrich syndrome protein family member 2|
           (WASP-family protein member 2) (WAVE-2 protein)
          Length = 497

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 45  GFAPPRRSPPAEDQGRPRPLPSV 113
           GFAPP   PP      P PLPS+
Sbjct: 315 GFAPPPAPPPPPPMSVPPPLPSM 337


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,668,601
Number of Sequences: 219361
Number of extensions: 1004637
Number of successful extensions: 3389
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 3123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3371
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result