ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast56b03 |
|---|---|
| Clone Library Name | barley_pub |
>RFC4_HUMAN (P35249) Activator 1 37 kDa subunit (Replication factor C 37 kDa| subunit) (A1 37 kDa subunit) (RF-C 37 kDa subunit) (RFC37) Length = 363 Score = 134 bits (337), Expect = 1e-31 Identities = 65/97 (67%), Positives = 79/97 (81%) Frame = +2 Query: 176 PWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGP 355 PWVEKYRP+ V +VA QEEVV VL +LE ADLP++LFYGPPGTGKT+T LA A +L+GP Sbjct: 39 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 98 Query: 356 ELYKARVLELNASDERXINVVRTKIKDFAAVAVGSAR 466 EL++ RVLELNASDER I VVR K+K+FA + V +R Sbjct: 99 ELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSR 135
>RFC2_YEAST (P40348) Activator 1 41 kDa subunit (Replication factor C subunit| 2) (Replication factor C2) Length = 353 Score = 131 bits (330), Expect = 8e-31 Identities = 60/99 (60%), Positives = 78/99 (78%) Frame = +2 Query: 173 QPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYG 352 QPWVEKYRP+ + +V Q+ V VL TL++A+LPHMLFYGPPGTGKT+T LA+ +LYG Sbjct: 25 QPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYG 84 Query: 353 PELYKARVLELNASDERXINVVRTKIKDFAAVAVGSARK 469 P+L K+R+LELNASDER I++VR K+K+FA + V K Sbjct: 85 PDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSK 123
>RFC2_SCHPO (Q09843) Probable activator 1 subunit 2 (Replication factor C| subunit 2) (Replication factor C2) Length = 340 Score = 119 bits (297), Expect = 5e-27 Identities = 56/95 (58%), Positives = 73/95 (76%) Frame = +2 Query: 170 SQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLY 349 S PWVE YRP+ + V+ QE V+VL TL + +LPHMLFYG PGTGKT+T LA++ +L+ Sbjct: 18 SIPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGSPGTGKTSTILALSRELF 77 Query: 350 GPELYKARVLELNASDERXINVVRTKIKDFAAVAV 454 GP+L K+RVLELNASDER I+++R K+K FA V Sbjct: 78 GPQLMKSRVLELNASDERGISIIREKVKSFAKTTV 112
>RFC4_CAEEL (P53016) Probable activator 1 37 kDa subunit (Replication factor C| 37 kDa subunit) (A1 37 kDa subunit) (RF-C 37 kDa subunit) (RFC37) Length = 334 Score = 113 bits (282), Expect = 3e-25 Identities = 53/102 (51%), Positives = 72/102 (70%) Frame = +2 Query: 164 PPSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQ 343 P W EKYRP+ + D+A+Q+EVV +L L+ DLPH+LFYGPPGTGKT+ ALA Q Sbjct: 12 PKVLTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQ 71 Query: 344 LYGPELYKARVLELNASDERXINVVRTKIKDFAAVAVGSARK 469 L+ ++ RVL+LNASDER I VVR KI+ F+ ++G + + Sbjct: 72 LFPKNIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHR 113
>RFC5_CAEEL (P34429) Putative activator 1 36 kDa subunit (Replication factor C| 36 kDa subunit) (A1 36 kDa subunit) (RF-C 36 kDa subunit) (Replication factor C subunit 5) Length = 368 Score = 111 bits (277), Expect = 1e-24 Identities = 53/99 (53%), Positives = 68/99 (68%) Frame = +2 Query: 146 EMAPLVPPSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTA 325 +M + PWVEKYRP ++ ++ E++V+ LT +E LPH+LFYGPPGTGKTTT Sbjct: 20 KMTTTTASNLPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTV 79 Query: 326 LAIAYQLYGPELYKARVLELNASDERXINVVRTKIKDFA 442 LA A Q+Y P + VLELNASDER I+VVR I +FA Sbjct: 80 LAAARQMYSPTKMASMVLELNASDERGIDVVRNTIVNFA 118
>RFCS_NANEQ (P60374) Replication factor C small subunit (RFC small subunit)| (Clamp loader small subunit) Length = 322 Score = 108 bits (270), Expect = 7e-24 Identities = 48/88 (54%), Positives = 70/88 (79%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 358 W EKYRP+++ D+ +QEE+ + L + +E ++PH+LF GPPGTGKTT ALA+A++LYG + Sbjct: 4 WTEKYRPKRIDDIINQEEIKKALKSFVEKKNMPHLLFAGPPGTGKTTAALALAHELYG-D 62 Query: 359 LYKARVLELNASDERXINVVRTKIKDFA 442 ++ LELNASDER I+V+R K+K+FA Sbjct: 63 AWRENFLELNASDERGIDVIRHKVKEFA 90
>RFC3_ARXAD (O74111) Activator 1 subunit 3 (Replication factor C subunit 3)| (Replication factor C3) Length = 338 Score = 107 bits (266), Expect = 2e-23 Identities = 52/92 (56%), Positives = 67/92 (72%) Frame = +2 Query: 170 SQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLY 349 S PWVEKYRP + +VA E V+ + +E LPH+LF+GPPGTGKTTT +A+A Q+Y Sbjct: 16 SLPWVEKYRPTTLDEVAGHEGVITTIKKFVEEGKLPHLLFHGPPGTGKTTTIIAVARQIY 75 Query: 350 GPELYKARVLELNASDERXINVVRTKIKDFAA 445 G Y+ +LELNASDER I+VVR +IK FA+ Sbjct: 76 GKN-YRNMILELNASDERGIDVVRDQIKTFAS 106
>RFCS_METMP (Q6M044) Replication factor C small subunit (RFC small subunit)| (Clamp loader small subunit) Length = 315 Score = 105 bits (263), Expect = 4e-23 Identities = 49/90 (54%), Positives = 66/90 (73%) Frame = +2 Query: 173 QPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYG 352 +PWVEKYRP + +V E+++ LTN +E +PH+LF G PG GKTT ALA+A LYG Sbjct: 3 KPWVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG 62 Query: 353 PELYKARVLELNASDERXINVVRTKIKDFA 442 + ++ LELN+SDER I+V+RTK+KDFA Sbjct: 63 -DTWRENFLELNSSDERGIDVIRTKVKDFA 91
>RFCS_SULTO (Q975D3) Replication factor C small subunit (RFC small subunit)| (Clamp loader small subunit) Length = 327 Score = 105 bits (262), Expect = 6e-23 Identities = 48/93 (51%), Positives = 67/93 (72%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 358 W EKYRPR + D+ +Q+++V L ++ ++PH+LF GPPGTGKTT ALA+ + LYG + Sbjct: 9 WAEKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVHDLYG-D 67 Query: 359 LYKARVLELNASDERXINVVRTKIKDFAAVAVG 457 Y+ LELNASDER I+V+R K+K+FA G Sbjct: 68 NYRQYFLELNASDERGIDVIRNKVKEFARTVAG 100
>RFC3_YEAST (P38629) Activator 1 40 kDa subunit (Replication factor C subunit| 3) (Replication factor C3) Length = 340 Score = 105 bits (262), Expect = 6e-23 Identities = 50/90 (55%), Positives = 66/90 (73%) Frame = +2 Query: 176 PWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGP 355 PWVEKYRP + +V Q EV+ + ++ LPH+LFYGPPGTGKT+T +A+A ++YG Sbjct: 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73 Query: 356 ELYKARVLELNASDERXINVVRTKIKDFAA 445 Y VLELNASD+R I+VVR +IKDFA+ Sbjct: 74 N-YSNMVLELNASDDRGIDVVRNQIKDFAS 102
>RFCS1_PYRAE (Q8ZYK4) Replication factor C small subunit 1 (RFC small subunit 1)| (Clamp loader small subunit 1) Length = 329 Score = 104 bits (260), Expect = 1e-22 Identities = 53/96 (55%), Positives = 67/96 (69%), Gaps = 1/96 (1%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 358 W EKYRPR +V EEV L ++ ++PH+LFYGPPGTGKTT AL +A +LYG E Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64 Query: 359 LYKARVLELNASDERXINVVRTKIKDFAAVA-VGSA 463 ++ LELNASDER INV+R ++K+FA A VG A Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA 100
>RFC3_SCHPO (O14003) Activator 1 subunit 3 (Replication factor C subunit 3)| (Replication factor C3) Length = 342 Score = 104 bits (260), Expect = 1e-22 Identities = 47/90 (52%), Positives = 68/90 (75%) Frame = +2 Query: 176 PWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGP 355 PWVEKYRP ++DV ++++ L + + +PHMLFYGPPGTGKT+T LA A ++YGP Sbjct: 24 PWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYGP 83 Query: 356 ELYKARVLELNASDERXINVVRTKIKDFAA 445 Y+ +++ELNASD+R I+ VR +IK+FA+ Sbjct: 84 N-YRNQLMELNASDDRGIDAVREQIKNFAS 112
>RFCS_AERPE (Q9YBS7) Replication factor C small subunit (RFC small subunit)| (Clamp loader small subunit) Length = 319 Score = 104 bits (260), Expect = 1e-22 Identities = 50/88 (56%), Positives = 66/88 (75%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 358 WVEKYRPR + D+ Q+ VV L ++ ++PH+LF GPPGTGKTT A A+A+ L+G E Sbjct: 3 WVEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDLFG-E 61 Query: 359 LYKARVLELNASDERXINVVRTKIKDFA 442 Y+ +LELNASDER INV+R K+K+FA Sbjct: 62 NYRQYMLELNASDERGINVIREKVKEFA 89
>RFCS2_PYRAE (Q8ZWS2) Replication factor C small subunit 2 (RFC small subunit 2)| (Clamp loader small subunit 2) Length = 319 Score = 104 bits (260), Expect = 1e-22 Identities = 53/96 (55%), Positives = 67/96 (69%), Gaps = 1/96 (1%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 358 W EKYRPR +V EEV L ++ ++PH+LFYGPPGTGKTT AL +A +LYG E Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64 Query: 359 LYKARVLELNASDERXINVVRTKIKDFAAVA-VGSA 463 ++ LELNASDER INV+R ++K+FA A VG A Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA 100
>RFCS_METMA (Q8PVY4) Replication factor C small subunit (RFC small subunit)| (Clamp loader small subunit) Length = 338 Score = 103 bits (256), Expect = 3e-22 Identities = 47/91 (51%), Positives = 67/91 (73%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 358 W+EKYRP ++ VA QEE + L + + T +LPH+LF GPPG GKT +A++IA +++G + Sbjct: 15 WIEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 74 Query: 359 LYKARVLELNASDERXINVVRTKIKDFAAVA 451 L++ ELNASDER I++VR KIK+FA A Sbjct: 75 LWRENFTELNASDERGIDIVRNKIKNFAKTA 105
>RFCS_ARCFU (O28219) Replication factor C small subunit (RFC small subunit)| (Clamp loader small subunit) (afRFC small subunit) (afRFCsm) Length = 319 Score = 103 bits (256), Expect = 3e-22 Identities = 52/96 (54%), Positives = 71/96 (73%), Gaps = 1/96 (1%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 358 WVEKYRPR + +V Q+EV++ L +E ++PH+LF GPPGTGKT TA+A+A L+G E Sbjct: 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG-E 65 Query: 359 LYKARVLELNASDERXINVVRTKIKDFAAVA-VGSA 463 ++ +E+NASDER I+VVR KIK+FA A +G A Sbjct: 66 NWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGA 101
>RFCS_METAC (Q8TSX5) Replication factor C small subunit (RFC small subunit)| (Clamp loader small subunit) Length = 338 Score = 102 bits (254), Expect = 5e-22 Identities = 48/96 (50%), Positives = 70/96 (72%), Gaps = 1/96 (1%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 358 W+EKYRP ++ VA Q+E + L + + T +LPH+LF GPPG GKT +A++IA +++G + Sbjct: 15 WIEKYRPVRLNQVAGQDETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 74 Query: 359 LYKARVLELNASDERXINVVRTKIKDFAAVA-VGSA 463 L++ ELNASDER I++VR KIK+FA A +G A Sbjct: 75 LWRENFTELNASDERGIDIVRNKIKNFAKTAPIGGA 110
>RFCS_SULSO (Q9UXF5) Replication factor C small subunit (RFC small subunit)| (Clamp loader small subunit) (SsoRFC small subunit) Length = 330 Score = 101 bits (251), Expect = 1e-21 Identities = 46/92 (50%), Positives = 65/92 (70%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 358 W EKYRP+ + D+ +Q E++ L ++ ++PH+LF GPPGTGKTT ALA+ + LYG + Sbjct: 10 WAEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYG-D 68 Query: 359 LYKARVLELNASDERXINVVRTKIKDFAAVAV 454 Y LELNASDER I+V+R K+K+FA + Sbjct: 69 NYTEYFLELNASDERGIDVIRNKVKEFARTVI 100
>RFCS_SULAC (Q4JAB0) Replication factor C small subunit (RFC small subunit)| (Clamp loader small subunit) Length = 325 Score = 100 bits (248), Expect = 2e-21 Identities = 46/88 (52%), Positives = 64/88 (72%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 358 W EKYRP+ + ++ +Q+E+V L ++ ++PH+LF GPPGTGKTT ALA+ LYG Sbjct: 7 WAEKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLYGNN 66 Query: 359 LYKARVLELNASDERXINVVRTKIKDFA 442 Y+ LELNASDER I+V+R K+K+FA Sbjct: 67 -YRQYFLELNASDERGIDVIRNKVKEFA 93
>RFCS_PICTO (Q6L1I0) Replication factor C small subunit (RFC small subunit)| (Clamp loader small subunit) Length = 318 Score = 99.4 bits (246), Expect = 4e-21 Identities = 44/90 (48%), Positives = 66/90 (73%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 358 W EKYRP+++ DV ++E + L + ++ DLPH++F GP GTGKT+TA+A+ +L+G + Sbjct: 5 WTEKYRPKRLDDVIGEDENINTLKSFVKNGDLPHLIFAGPAGTGKTSTAIALTIELFGDD 64 Query: 359 LYKARVLELNASDERXINVVRTKIKDFAAV 448 +K LELNASDER I+++R IKDFA + Sbjct: 65 -WKENFLELNASDERGIDIIRNNIKDFAKI 93
>RFCS_HALSA (Q9HN27) Replication factor C small subunit (RFC small subunit)| (Clamp loader small subunit) Length = 322 Score = 96.7 bits (239), Expect = 3e-20 Identities = 47/93 (50%), Positives = 67/93 (72%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 358 WVEKYRP +++DV ++ L + ++ DLPH+LF GP GTGKT ++++IA +LYG + Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDD 71 Query: 359 LYKARVLELNASDERXINVVRTKIKDFAAVAVG 457 ++ LELNASDER I+VVR +IKDFA + G Sbjct: 72 -WQDNFLELNASDERGIDVVRDRIKDFARSSFG 103
>RFCS_HALMA (Q5UZE5) Replication factor C small subunit (RFC small subunit)| (Clamp loader small subunit) Length = 325 Score = 96.7 bits (239), Expect = 3e-20 Identities = 50/93 (53%), Positives = 64/93 (68%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 358 W+EKYRP+ + DV E +V L + + DL HMLF GP GTGKTT A AIA +LYG + Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 75 Query: 359 LYKARVLELNASDERXINVVRTKIKDFAAVAVG 457 ++ LELNASDER I+VVR +IK+FA + G Sbjct: 76 -WREHFLELNASDERGIDVVRDRIKNFARTSFG 107
>RFC5_HUMAN (P40937) Activator 1 36 kDa subunit (Replication factor C 36 kDa| subunit) (A1 36 kDa subunit) (RF-C 36 kDa subunit) (RFC36) (Replication factor C subunit 5) Length = 340 Score = 94.7 bits (234), Expect = 1e-19 Identities = 43/90 (47%), Positives = 62/90 (68%) Frame = +2 Query: 176 PWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGP 355 PWVEKYRP+ + D+ ++++ + + LPH+L YGPPGTGKT+T LA A QLY Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80 Query: 356 ELYKARVLELNASDERXINVVRTKIKDFAA 445 + + + VLELNASD+R I+++R I FA+ Sbjct: 81 KEFGSMVLELNASDDRGIDIIRGPILSFAS 110
>RFC5_MOUSE (Q9D0F6) Activator 1 36 kDa subunit (Replication factor C 36 kDa| subunit) (A1 36 kDa subunit) (RF-C 36 kDa subunit) (RFC36) (Replication factor C subunit 5) Length = 339 Score = 94.7 bits (234), Expect = 1e-19 Identities = 44/90 (48%), Positives = 62/90 (68%) Frame = +2 Query: 176 PWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGP 355 PWVEKYRP+ + D+ ++++ + + LPH+L YGPPGTGKT+T LA A QLY Sbjct: 20 PWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79 Query: 356 ELYKARVLELNASDERXINVVRTKIKDFAA 445 + + + VLELNASD+R I++VR I FA+ Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFAS 109
>RFCS_NATPD (Q3ITJ2) Replication factor C small subunit (RFC small subunit)| (Clamp loader small subunit) Length = 325 Score = 93.2 bits (230), Expect = 3e-19 Identities = 45/93 (48%), Positives = 61/93 (65%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 358 W+EKYRP+ + D+ E + L + DLPH+LF GP G GKTT A AIA ++YG + Sbjct: 14 WIEKYRPQTLDDIVGHESITERLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVYGDD 73 Query: 359 LYKARVLELNASDERXINVVRTKIKDFAAVAVG 457 ++ LELNASD+R I+VVR +IK FA + G Sbjct: 74 -WRENFLELNASDQRGIDVVRDRIKSFARASFG 105
>RFC4_SCHPO (O94449) Probable activator 1 subunit 4 (Replication factor C| subunit 4) (Replication factor C4) Length = 342 Score = 90.5 bits (223), Expect = 2e-18 Identities = 49/100 (49%), Positives = 62/100 (62%) Frame = +2 Query: 143 GEMAPLVPPSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTT 322 GE V PWVEKYRP + D+ EE + L + ++PH++ G PG GKTT+ Sbjct: 11 GEKNNSVAYELPWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTS 70 Query: 323 ALAIAYQLYGPELYKARVLELNASDERXINVVRTKIKDFA 442 L +A+ L GP YK VLELNASDER I+VVR +IK FA Sbjct: 71 ILCLAHALLGP-AYKEGVLELNASDERGIDVVRNRIKAFA 109
>RFCS_METTH (O26343) Replication factor C small subunit (RFC small subunit)| (Clamp loader small subunit) (mthRFC small subunit) Length = 321 Score = 90.5 bits (223), Expect = 2e-18 Identities = 43/88 (48%), Positives = 61/88 (69%) Frame = +2 Query: 176 PWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGP 355 PWVEKYRP+++ D+ QE ++ L +E +P+++F GP G GKTT ALA+A ++ G Sbjct: 7 PWVEKYRPQKLDDIVGQEHIIPRLKRYVEEKSMPNLMFTGPAGVGKTTAALALAREILG- 65 Query: 356 ELYKARVLELNASDERXINVVRTKIKDF 439 E ++ LELNASD R I+ VRT IK+F Sbjct: 66 EYWRQNFLELNASDARGIDTVRTSIKNF 93
>RFCS_THEVO (Q977Z9) Replication factor C small subunit (RFC small subunit)| (Clamp loader small subunit) Length = 318 Score = 90.1 bits (222), Expect = 3e-18 Identities = 41/90 (45%), Positives = 65/90 (72%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 358 W EKYRP+ + ++ ++E ++ L + +E +LPH+LF G GTGKT+TA+A+A +L+G E Sbjct: 5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFG-E 63 Query: 359 LYKARVLELNASDERXINVVRTKIKDFAAV 448 +K +E+NAS+E I+V+R KIKD A + Sbjct: 64 SWKENFIEMNASNENGIDVIRNKIKDIARI 93
>RFCS_THEAC (Q9HI47) Replication factor C small subunit (RFC small subunit)| (Clamp loader small subunit) Length = 318 Score = 88.6 bits (218), Expect = 7e-18 Identities = 39/90 (43%), Positives = 66/90 (73%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 358 W EKYRP+ + ++ ++E ++ L + +E ++PH+LF G GTGKT+TA+A+A +L+G + Sbjct: 5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELFG-D 63 Query: 359 LYKARVLELNASDERXINVVRTKIKDFAAV 448 +K ++E+NAS+E I+V+R KIKD A + Sbjct: 64 SWKENMVEMNASNENGIDVIRNKIKDIARI 93
>RFC2_MOUSE (Q9WUK4) Activator 1 40 kDa subunit (Replication factor C 40 kDa| subunit) (A1 40 kDa subunit) (RF-C 40 kDa subunit) (RFC40) Length = 349 Score = 86.7 bits (213), Expect = 3e-17 Identities = 45/89 (50%), Positives = 60/89 (67%) Frame = +2 Query: 176 PWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGP 355 PWVEKYRP ++ ++ E+ V L ++P+++ GPPGTGKTT+ L +A L GP Sbjct: 32 PWVEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 91 Query: 356 ELYKARVLELNASDERXINVVRTKIKDFA 442 L K VLELNAS++R I+VVR KIK FA Sbjct: 92 AL-KDAVLELNASNDRGIDVVRNKIKMFA 119
>RFC2_CHICK (P53033) Activator 1 40 kDa subunit (Replication factor C 40 kDa| subunit) (A1 40 kDa subunit) (RF-C 40 kDa subunit) (RFC40) Length = 359 Score = 86.3 bits (212), Expect = 4e-17 Identities = 46/89 (51%), Positives = 61/89 (68%) Frame = +2 Query: 176 PWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGP 355 PWVEKYRP ++ +V E+ V L + ++P+++ GPPGTGKTT+ L +A L GP Sbjct: 42 PWVEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGP 101 Query: 356 ELYKARVLELNASDERXINVVRTKIKDFA 442 L K VLELNAS++R I+VVR KIK FA Sbjct: 102 AL-KDAVLELNASNDRGIDVVRNKIKMFA 129
>RFC2_HUMAN (P35250) Activator 1 40 kDa subunit (Replication factor C 40 kDa| subunit) (A1 40 kDa subunit) (RF-C 40 kDa subunit) (RFC40) Length = 354 Score = 85.1 bits (209), Expect = 8e-17 Identities = 44/89 (49%), Positives = 60/89 (67%) Frame = +2 Query: 176 PWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGP 355 PWVEKYRP ++ ++ E+ V L ++P+++ GPPGTGKTT+ L +A L GP Sbjct: 37 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 96 Query: 356 ELYKARVLELNASDERXINVVRTKIKDFA 442 L K +LELNAS++R I+VVR KIK FA Sbjct: 97 AL-KDAMLELNASNDRGIDVVRNKIKMFA 124
>RFC4_YEAST (P40339) Activator 1 37 kDa subunit (Replication factor C subunit| 4) (Replication factor C4) Length = 323 Score = 84.7 bits (208), Expect = 1e-16 Identities = 42/89 (47%), Positives = 58/89 (65%) Frame = +2 Query: 176 PWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGP 355 PWVEKYRP+ + D+ +E + L + ++PHM+ G PG GKTT+ +A++L G Sbjct: 10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG- 68 Query: 356 ELYKARVLELNASDERXINVVRTKIKDFA 442 Y VLELNASD+R I+VVR +IK FA Sbjct: 69 RSYADGVLELNASDDRGIDVVRNQIKHFA 97
>RFC2_DROME (P53034) Activator 1 40 kDa subunit (Replication factor C 40 kDa| subunit) (A1 40 kDa subunit) (RF-C 40 kDa subunit) (RFC40) Length = 331 Score = 83.6 bits (205), Expect = 2e-16 Identities = 44/89 (49%), Positives = 58/89 (65%) Frame = +2 Query: 176 PWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGP 355 PW+EKYRP + K++ E+ V L+ + P+++ GPPG GKTTT +A L G Sbjct: 17 PWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLG- 75 Query: 356 ELYKARVLELNASDERXINVVRTKIKDFA 442 + YK VLELNAS+ER I+VVR KIK FA Sbjct: 76 DSYKEAVLELNASNERGIDVVRNKIKMFA 104
>RFCS_METKA (Q8TZC4) Replication factor C small subunit (RFC small subunit)| (Clamp loader small subunit) [Contains: Mkn RFC intein] Length = 635 Score = 81.3 bits (199), Expect = 1e-15 Identities = 39/73 (53%), Positives = 52/73 (71%) Frame = +2 Query: 176 PWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGP 355 PWVEKYRP+++ D+ QE VV L + D+P++LF GPPGTGKTT AL +A +L+G Sbjct: 12 PWVEKYRPKRLDDIVDQEHVVERLKAYVNRGDMPNLLFAGPPGTGKTTAALCLARELFG- 70 Query: 356 ELYKARVLELNAS 394 E ++ LELNAS Sbjct: 71 EHWRDNFLELNAS 83 Score = 31.6 bits (70), Expect = 1.1 Identities = 16/29 (55%), Positives = 22/29 (75%), Gaps = 1/29 (3%) Frame = +2 Query: 383 LNASDERXINVVRTKIKDFAAV-AVGSAR 466 L+ SDER I+V+RTK+K+FA +G AR Sbjct: 385 LHNSDERGIDVIRTKVKNFARTRPMGGAR 413
>RFCL_PYRHO (O57853) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) Length = 468 Score = 69.3 bits (168), Expect = 5e-12 Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 6/90 (6%) Frame = +2 Query: 167 PSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLET------ADLPHMLFYGPPGTGKTTTAL 328 P PW+EKYRPR++ ++ +QE+ + + +E+ +L GPPG+GKTTT Sbjct: 2 PDVPWIEKYRPRKLSEIVNQEQALEKVRAWIESWLHGNPPKKKALLLAGPPGSGKTTTVY 61 Query: 329 AIAYQLYGPELYKARVLELNASDERXINVV 418 A+A++ Y V+ELNASDER N + Sbjct: 62 ALAHE------YNFEVIELNASDERTYNKI 85
>RFCL_PYRFU (Q9UWR2) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) (PfuRFC large subunit) Length = 479 Score = 67.8 bits (164), Expect = 1e-11 Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 6/85 (7%) Frame = +2 Query: 167 PSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPH------MLFYGPPGTGKTTTAL 328 P PWVEKYRP+++ ++ +QEE + + +E+ H +L GPPG+GKTTT Sbjct: 2 PELPWVEKYRPKKLSEIVNQEEAIEKVRAWIESWLHGHPPKKKALLLAGPPGSGKTTTVY 61 Query: 329 AIAYQLYGPELYKARVLELNASDER 403 A+A + Y V+ELNASDER Sbjct: 62 ALANE------YNFEVIELNASDER 80
>RFCL_METKA (Q8TZC5) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) Length = 510 Score = 67.0 bits (162), Expect = 2e-11 Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 6/87 (6%) Frame = +2 Query: 176 PWVEKYRPRQVKDVAHQEEVVRVL---TNTLETADLPH---MLFYGPPGTGKTTTALAIA 337 PWVEKYRPR +K++ +Q+E + L N +P +L +GPPGTGKT+ A A+A Sbjct: 3 PWVEKYRPRSLKELVNQDEAKKELAAWANEWARGSIPEPRAVLLHGPPGTGKTSAAYALA 62 Query: 338 YQLYGPELYKARVLELNASDERXINVV 418 + + V+ELNASD+R NV+ Sbjct: 63 HD------FGWDVIELNASDKRTRNVI 83
>RFC5_YEAST (P38251) Activator 1 40 kDa subunit (Replication factor C subunit| 5) (Replication factor C5) Length = 354 Score = 66.2 bits (160), Expect = 4e-11 Identities = 27/67 (40%), Positives = 44/67 (65%), Gaps = 1/67 (1%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLETA-DLPHMLFYGPPGTGKTTTALAIAYQLYGP 355 WV+KYRP+ + ++H EE+ L + + DLPH+L YGP GTGK T +A+ ++GP Sbjct: 4 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 63 Query: 356 ELYKARV 376 +Y+ ++ Sbjct: 64 GVYRLKI 70
>RFCL_PYRAB (Q9V2G3) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) (PabRFC large subunit) Length = 478 Score = 65.9 bits (159), Expect = 5e-11 Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 6/90 (6%) Frame = +2 Query: 167 PSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLET------ADLPHMLFYGPPGTGKTTTAL 328 P PWVEKYRPR++ ++ +QE+ + + +E +L GPPG+GKTTT Sbjct: 1 PEVPWVEKYRPRRLSEIINQEDAISKVKAWIEAWLHGNPPKKKALLLAGPPGSGKTTTVY 60 Query: 329 AIAYQLYGPELYKARVLELNASDERXINVV 418 A+A + Y V+ELNASDER + + Sbjct: 61 ALARE------YNFEVIELNASDERTYDKI 84
>RFCS_PYRFU (Q8U4J3) Replication factor C small subunit (RFC small subunit)| (Clamp loader small subunit) (PfuRFC small subunit) [Contains: Pfu RFC intein] Length = 852 Score = 63.5 bits (153), Expect = 3e-10 Identities = 25/50 (50%), Positives = 37/50 (74%) Frame = +2 Query: 173 QPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTT 322 +PWVEKYRP+++ D+ QE +V+ L + ++T +PH+LF GPPG GK T Sbjct: 13 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 62 Score = 51.2 bits (121), Expect = 1e-06 Identities = 27/49 (55%), Positives = 35/49 (71%) Frame = +2 Query: 296 PPGTGKTTTALAIAYQLYGPELYKARVLELNASDERXINVVRTKIKDFA 442 P TT ALA+A +L+G E ++ LELNASDER INV+R K+K+FA Sbjct: 579 PTVVHNTTAALALARELFG-ENWRHNFLELNASDERGINVIREKVKEFA 626
>RFCS_PYRKO (Q5JHP2) Replication factor C small subunit (RFC small subunit)| (Clamp loader small subunit) [Contains: Pko RFC intein] Length = 866 Score = 63.2 bits (152), Expect = 3e-10 Identities = 24/50 (48%), Positives = 38/50 (76%) Frame = +2 Query: 173 QPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTT 322 +PWVEKYRP++++D+ Q+ +V+ L + ++T +PH+LF GPPG GK T Sbjct: 13 KPWVEKYRPQRLEDIVGQDHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 62 Score = 51.2 bits (121), Expect = 1e-06 Identities = 27/49 (55%), Positives = 35/49 (71%) Frame = +2 Query: 296 PPGTGKTTTALAIAYQLYGPELYKARVLELNASDERXINVVRTKIKDFA 442 P TT ALA+A +L+G E ++ LELNASDER INV+R K+K+FA Sbjct: 594 PTVVHNTTAALALARELFG-ENWRHNFLELNASDERGINVIREKVKEFA 641
>RFCL_METJA (Q58294) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) Length = 516 Score = 62.8 bits (151), Expect = 4e-10 Identities = 40/95 (42%), Positives = 55/95 (57%), Gaps = 4/95 (4%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLET---ADLPH-MLFYGPPGTGKTTTALAIAYQL 346 WVEKYRP+ +KDVA E+V L +E+ + P +L GPPG GKTT A A+A Sbjct: 4 WVEKYRPKSLKDVAGHEKVKEKLKTWIESYLKGETPKPILLVGPPGCGKTTLAYALAND- 62 Query: 347 YGPELYKARVLELNASDERXINVVRTKIKDFAAVA 451 Y V+ELNASD+R + ++ K+ AA + Sbjct: 63 -----YGFEVIELNASDKRNSSAIK-KVVGHAATS 91
>RFCS_PYRAB (Q9V2G4) Replication factor C small subunit (RFC small subunit)| (Clamp loader small subunit) (PabRFC small subunit) [Contains: Pab RFC-1 intein; Pab RFC-2 intein] Length = 1437 Score = 62.8 bits (151), Expect = 4e-10 Identities = 24/50 (48%), Positives = 38/50 (76%) Frame = +2 Query: 173 QPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTT 322 +PWVEKYRP++++++ QE +V+ L + ++T +PH+LF GPPG GK T Sbjct: 15 KPWVEKYRPQKLEEIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 64 Score = 50.8 bits (120), Expect = 2e-06 Identities = 26/43 (60%), Positives = 34/43 (79%) Frame = +2 Query: 314 TTTALAIAYQLYGPELYKARVLELNASDERXINVVRTKIKDFA 442 TT ALA+A +L+G E ++ LELNASDER INV+R K+K+FA Sbjct: 561 TTAALALARELFG-ENWRHNFLELNASDERGINVIREKVKEFA 602
>RFCL_PYRKO (Q5JHP1) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) Length = 499 Score = 62.4 bits (150), Expect = 6e-10 Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 6/92 (6%) Frame = +2 Query: 176 PWVEKYRPRQVKDVAHQE---EVVRVLTNTLETADLPH---MLFYGPPGTGKTTTALAIA 337 PWVEKYRPR++ ++ +QE E VR + P +L GPPG GKTTT A+A Sbjct: 5 PWVEKYRPRKLSEIVNQEKALEQVRAWVEAWLHGNPPKKKALLLAGPPGVGKTTTVYALA 64 Query: 338 YQLYGPELYKARVLELNASDERXINVVRTKIK 433 + Y V+ELNASDER + ++ Sbjct: 65 NE------YGFEVIELNASDERTYEKIERYVQ 90
>RFCS_METJA (Q58817) Replication factor C small subunit (RFC small subunit)| (Clamp loader small subunit) [Contains: Mja RFC-1 intein; Mja RFC-2 intein; Mja RFC-3 intein] Length = 1847 Score = 62.4 bits (150), Expect = 6e-10 Identities = 25/50 (50%), Positives = 35/50 (70%) Frame = +2 Query: 173 QPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTT 322 +PWVEKYRP+ + D+ Q+E+V+ L +E +PH+LF GPPG GK T Sbjct: 7 KPWVEKYRPKTLDDIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGKCLT 56 Score = 32.7 bits (73), Expect = 0.48 Identities = 14/20 (70%), Positives = 18/20 (90%) Frame = +2 Query: 383 LNASDERXINVVRTKIKDFA 442 L+ SDER I+V+RTK+KDFA Sbjct: 1060 LHNSDERGIDVIRTKVKDFA 1079
>RFCS_PYRHO (O57852) Replication factor C small subunit (RFC small subunit)| (Clamp loader small subunit) [Contains: Pho RFC intein] Length = 855 Score = 62.0 bits (149), Expect = 7e-10 Identities = 24/50 (48%), Positives = 37/50 (74%) Frame = +2 Query: 173 QPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTT 322 +PWVEKYRP+++ ++ QE +V+ L + ++T +PH+LF GPPG GK T Sbjct: 15 KPWVEKYRPQRLDEIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 64 Score = 50.1 bits (118), Expect = 3e-06 Identities = 26/49 (53%), Positives = 35/49 (71%) Frame = +2 Query: 296 PPGTGKTTTALAIAYQLYGPELYKARVLELNASDERXINVVRTKIKDFA 442 P TT ALA++ +L+G E ++ LELNASDER INV+R K+K+FA Sbjct: 581 PTVVHNTTAALALSRELFG-ENWRHNFLELNASDERGINVIREKVKEFA 628
>RFCL_SULTO (Q975D4) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) Length = 440 Score = 61.2 bits (147), Expect = 1e-09 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 5/87 (5%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLET-----ADLPHMLFYGPPGTGKTTTALAIAYQ 343 W KYRP+ + +V ++E+ + L +E+ + +L YGPPG GKTT A A+A Sbjct: 5 WFLKYRPKTLNEVENEEDAKKELVEWIESWLKGKPNYKAVLLYGPPGVGKTTLAEALARD 64 Query: 344 LYGPELYKARVLELNASDERXINVVRT 424 YK + E+NASD R +N +RT Sbjct: 65 ------YKLELFEMNASDSRNLNDIRT 85
>RFCL_SULSO (Q9UXF6) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) (SsoRFC large subunit) Length = 405 Score = 60.1 bits (144), Expect = 3e-09 Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 5/95 (5%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLET-----ADLPHMLFYGPPGTGKTTTALAIAYQ 343 W KYRPR +KDV +Q++ + L +E+ +++ +L +GPPG GKT A A+A+ Sbjct: 4 WFLKYRPRSLKDVENQDDAKKQLQEWIESWLNGNSNVKAVLLHGPPGVGKTVLAEALAHD 63 Query: 344 LYGPELYKARVLELNASDERXINVVRTKIKDFAAV 448 Y +LE+NASD R + +++ I + AAV Sbjct: 64 ------YNFELLEMNASDSRKLQDIKS-IAEKAAV 91
>RFC3_MOUSE (Q8R323) Activator 1 38 kDa subunit (Replication factor C 38 kDa| subunit) (A1 38 kDa subunit) (RF-C 38 kDa subunit) (RFC38) (Replication factor C subunit 3) Length = 356 Score = 59.3 bits (142), Expect = 5e-09 Identities = 26/66 (39%), Positives = 38/66 (57%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 358 WV+KYRP + + + +E L N ++ D PH+L YGP G GK T + I +LYG Sbjct: 4 WVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGIG 63 Query: 359 LYKARV 376 + K R+ Sbjct: 64 VEKLRI 69
>RFCL_METMP (Q6M0E9) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) Length = 486 Score = 59.3 bits (142), Expect = 5e-09 Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 4/86 (4%) Frame = +2 Query: 173 QPWVEKYRPRQVKDVAHQEEVVRVLTNTLET----ADLPHMLFYGPPGTGKTTTALAIAY 340 + WVEKYRP+ + DVA + + L +E+ + +L GPPG+GKTT A AIA Sbjct: 2 EEWVEKYRPKSLNDVAGHNKTKQALIEWIESIIGGQNQKPILLAGPPGSGKTTLAYAIAN 61 Query: 341 QLYGPELYKARVLELNASDERXINVV 418 Y V+ELNASD+R +V+ Sbjct: 62 D------YAFDVIELNASDKRNKDVI 81
>RFCL_SULAC (Q4JAB1) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) Length = 437 Score = 58.9 bits (141), Expect = 6e-09 Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 5/86 (5%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLET-----ADLPHMLFYGPPGTGKTTTALAIAYQ 343 W KYRP+ +++V +Q+EV L +E+ +L YGPPG GKTT A A+A Sbjct: 5 WFLKYRPKSLQEVENQDEVKEELKKWIESWLNGEPTAKAVLLYGPPGVGKTTLAEALARD 64 Query: 344 LYGPELYKARVLELNASDERXINVVR 421 YK +LE+NASD R + ++ Sbjct: 65 ------YKLELLEMNASDSRNLRDIK 84
>RFC3_HUMAN (P40938) Activator 1 38 kDa subunit (Replication factor C 38 kDa| subunit) (A1 38 kDa subunit) (RF-C 38 kDa subunit) (RFC38) (Replication factor C subunit 3) Length = 356 Score = 58.5 bits (140), Expect = 8e-09 Identities = 26/66 (39%), Positives = 38/66 (57%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 358 WV+KYRP + + + +E L N ++ D PH+L YGP G GK T + I +LYG Sbjct: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63 Query: 359 LYKARV 376 + K R+ Sbjct: 64 VEKLRI 69
>RFC5_NEUCR (Q8X082) Probable activator 1 subunit 5 (Replication factor C| subunit 5) (Replication factor C5) Length = 352 Score = 58.5 bits (140), Expect = 8e-09 Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 4/83 (4%) Frame = +2 Query: 182 VEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPEL 361 V+K+RPR + + + E+ L + ++ D PH+L YGP G GK T +A +LYGP + Sbjct: 5 VDKHRPRSLDALTYHTELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGPGV 64 Query: 362 YK----ARVLELNASDERXINVV 418 K ARV + +++ + N+V Sbjct: 65 EKIKIDARVFQTSSNRKLEFNIV 87
>RFCL_AERPE (Q9YBS5) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) Length = 479 Score = 58.2 bits (139), Expect = 1e-08 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 8/91 (8%) Frame = +2 Query: 155 PLVPPSQ--PWVEKYRPRQVKDVAHQEEVVRVLTNTLET------ADLPHMLFYGPPGTG 310 P+V S PWV KYRP++V+DV +Q++ ++L + D L YGPPG G Sbjct: 2 PIVARSSRVPWVIKYRPKRVEDVVNQDQAKKILVPWFKAWLEGRKPDKRAALLYGPPGVG 61 Query: 311 KTTTALAIAYQLYGPELYKARVLELNASDER 403 KT+ AIA + + ++ELNASD R Sbjct: 62 KTSLVEAIASE------FNLEMIELNASDYR 86
>RFC5_SCHPO (O94697) Probable activator 1 subunit 5 (Replication factor C| subunit 5) (Replication factor C5) Length = 358 Score = 56.6 bits (135), Expect = 3e-08 Identities = 23/66 (34%), Positives = 40/66 (60%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 358 W+++YRP+ + + + +++ L + T + PH+L YGP G GK T +AI +LYGP Sbjct: 3 WLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYGPG 62 Query: 359 LYKARV 376 K ++ Sbjct: 63 SEKLKI 68
>RFCL_THEAC (Q9HIP7) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) Length = 418 Score = 55.1 bits (131), Expect = 9e-08 Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 5/86 (5%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLET--ADLPH---MLFYGPPGTGKTTTALAIAYQ 343 W +KYRP+ + DV E+ + +T +E+ +P ++ YG GTGKTTTA AIA Sbjct: 4 WADKYRPKNIDDVILNSEIRKQITEWIESWKEGIPKKRSLILYGSQGTGKTTTAYAIAGT 63 Query: 344 LYGPELYKARVLELNASDERXINVVR 421 P V+E+NASD+R + +R Sbjct: 64 FGVP------VVEMNASDQRNRDSMR 83
>RFCL_PYRAE (Q8ZYK3) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) Length = 422 Score = 53.9 bits (128), Expect = 2e-07 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 20/105 (19%) Frame = +2 Query: 176 PWVEKYRPRQVKDVAHQEEVVRVLTNTL--------------------ETADLPHMLFYG 295 PW+EKYRP+ ++ +QEE L + + E A+ +L G Sbjct: 4 PWIEKYRPKSFAEIVNQEEAKYTLASWICLKFRAPKEFCTRWAKKRDKEVAEAKAILLAG 63 Query: 296 PPGTGKTTTALAIAYQLYGPELYKARVLELNASDERXINVVRTKI 430 PPG GKTT A+A ++ + ++ELNASD R + +R I Sbjct: 64 PPGVGKTTLVHALAREI------RYELIELNASDVRTADRLRQVI 102
>RUVB2_SYNJA (Q2JTJ1) Holliday junction ATP-dependent DNA helicase ruvB 2 (EC| 3.6.1.-) Length = 370 Score = 53.1 bits (126), Expect = 3e-07 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 5/103 (4%) Frame = +2 Query: 143 GEMAPLVPPSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGT 307 G + P PS+ E RPR + + Q E+ VL+ + A L H+LFYGPPG Sbjct: 37 GLLQPQAHPSEAQEESLRPRTLAEYIGQTELKEVLSIAIAAARARGEPLDHLLFYGPPGL 96 Query: 308 GKTTTALAIAYQLYGPELYKARVLELNASDERXINVVRTKIKD 436 GKTT A +A ++ G Y L + + +VR K D Sbjct: 97 GKTTVAAVLAAEM-GSRFYMTTAPALESPRDIAGYLVRLKQGD 138
>RFCL_NANEQ (P60373) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) Length = 430 Score = 53.1 bits (126), Expect = 3e-07 Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 4/80 (5%) Frame = +2 Query: 176 PWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPH----MLFYGPPGTGKTTTALAIAYQ 343 P KYRP+ + +V +QE+ ++L + + + +L YGPPGTGKT++ A+A + Sbjct: 32 PLFIKYRPKTLDEVENQEQAKQILRDYVINYKKKYKGKALLLYGPPGTGKTSSVYALANE 91 Query: 344 LYGPELYKARVLELNASDER 403 L G E VLE+NASDER Sbjct: 92 L-GYE-----VLEVNASDER 105
>RFCL_METMA (Q8Q084) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) Length = 610 Score = 52.8 bits (125), Expect = 4e-07 Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 5/94 (5%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLE--TADLPH---MLFYGPPGTGKTTTALAIAYQ 343 W EKYRPR + DV + V+ L E + +P ++ YGP G GKT++A A+A Sbjct: 12 WAEKYRPRTLGDVVGNRKAVQDLRKWAEEWQSGIPEKRAVILYGPAGIGKTSSAHALAGD 71 Query: 344 LYGPELYKARVLELNASDERXINVVRTKIKDFAA 445 + + V+ELNASD+R V+ KI AA Sbjct: 72 M------EWEVIELNASDQRTAGVIE-KIAGSAA 98
>RFCL_METAC (Q8TPU4) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) Length = 607 Score = 52.0 bits (123), Expect = 8e-07 Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 5/94 (5%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLE--TADLPH---MLFYGPPGTGKTTTALAIAYQ 343 W EKYRPR ++DV ++ VR E + +P ++ YGP G GKT++A A+A Sbjct: 12 WAEKYRPRTLEDVVGNKKAVRDFRAWAEEWQSRIPETRAVILYGPAGIGKTSSAHALARD 71 Query: 344 LYGPELYKARVLELNASDERXINVVRTKIKDFAA 445 + V+ELNASD+R V+ KI AA Sbjct: 72 M------DWDVIELNASDQRTAGVIE-KIAGSAA 98
>RUVB_SYNJB (Q2JP68) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 378 Score = 51.2 bits (121), Expect = 1e-06 Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 5/101 (4%) Frame = +2 Query: 149 MAPLVPPSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGK 313 + P P + E RPR + + Q E+ VL+ + A L H+LFYGPPG GK Sbjct: 47 LQPQAHPGEAQEESLRPRTLAEYIGQTELKEVLSIAIAAARARQEPLDHLLFYGPPGLGK 106 Query: 314 TTTALAIAYQLYGPELYKARVLELNASDERXINVVRTKIKD 436 TT A +A ++ G + Y L + + +VR K D Sbjct: 107 TTVAAVLAAEM-GSQFYMTTAPALESPRDIAGYLVRLKRGD 146
>RUVB1_SYNJA (Q2JTM7) Holliday junction ATP-dependent DNA helicase ruvB 1 (EC| 3.6.1.-) Length = 378 Score = 51.2 bits (121), Expect = 1e-06 Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 5/101 (4%) Frame = +2 Query: 149 MAPLVPPSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGK 313 + P P + E RPR + + Q E+ VL+ + A L H+LFYGPPG GK Sbjct: 47 LQPQAHPGEAQEESLRPRTLAEYIGQTELKEVLSIAIAAARARQEPLDHLLFYGPPGLGK 106 Query: 314 TTTALAIAYQLYGPELYKARVLELNASDERXINVVRTKIKD 436 TT A +A ++ G + Y L + + +VR K D Sbjct: 107 TTVAAVLAAEM-GSQFYMTTAPALESPRDIAGYLVRLKRGD 146
>RFCL_ARCFU (O29072) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) (afRFC large subunit) (afRFCla) Length = 479 Score = 50.4 bits (119), Expect = 2e-06 Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 3/83 (3%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVV-RVL--TNTLETADLPHMLFYGPPGTGKTTTALAIAYQLY 349 WVEKYRP+ +++V + ++ RV+ + + P +L GPPG GKT+ ALA+A + Sbjct: 3 WVEKYRPKTLEEVVADKSIITRVIKWAKSWKRGSKP-LLLAGPPGVGKTSLALALANTM- 60 Query: 350 GPELYKARVLELNASDERXINVV 418 G E +ELNASD+R V+ Sbjct: 61 GWE-----AVELNASDQRSWRVI 78
>LON2_BACSU (P42425) ATP-dependent protease La homolog (EC 3.4.21.-)| Length = 552 Score = 50.1 bits (118), Expect = 3e-06 Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 8/88 (9%) Frame = +2 Query: 170 SQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQL- 346 S+P EK RP+ KD+ QE+ ++ L L + H++ YGPPG GKT A + + Sbjct: 56 SEPLSEKVRPKSFKDIVGQEDGIKALKAALCGPNPQHVIVYGPPGVGKTAAARLVLEEAK 115 Query: 347 ---YGPELYKARVLELNAS----DERXI 409 P +A +EL+A+ DER I Sbjct: 116 KHKQSPFKEQAVFVELDATTARFDERGI 143
>RFCL_HALMA (Q5V1F7) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) Length = 508 Score = 49.7 bits (117), Expect = 4e-06 Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLETAD--LPHMLFYGPPGTGKTTTALAIAYQLYG 352 W EKYRP + +V ++ L ET D ++ YG PG GKT+ A A+A + Sbjct: 3 WTEKYRPTTLSEVRGNDKARDALKKWAETWDDHREAVILYGSPGIGKTSAAHALANDMEW 62 Query: 353 PELYKARVLELNASDERXINVV 418 P +ELNASD R +V+ Sbjct: 63 P------TIELNASDSRTKDVI 78
>CHL12_EMENI (P0C1D3) Protein CHL12| Length = 993 Score = 47.8 bits (112), Expect = 1e-05 Identities = 38/111 (34%), Positives = 50/111 (45%), Gaps = 25/111 (22%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTL----------------------ETADLPH---M 283 W EKYR R+ ++ E R + L + + PH + Sbjct: 258 WTEKYRARKYTELIGDERTNRSILRWLRGWDPIVYPSLARAKQNKKYNNDEEERPHRKVL 317 Query: 284 LFYGPPGTGKTTTALAIAYQLYGPELYKARVLELNASDERXINVVRTKIKD 436 L GPPG GKTT A A Q G E VLE+NASDER +VV+ +I+D Sbjct: 318 LLCGPPGLGKTTLAHVCARQA-GYE-----VLEINASDERSRDVVKGRIRD 362
>RUVB_PROMM (Q7V910) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 352 Score = 47.4 bits (111), Expect = 2e-05 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 6/73 (8%) Frame = +2 Query: 146 EMAPLVPPSQPWVEK-YRPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGT 307 + +PL + P E RPR+++D Q E+ +VL ++ A L H+L YGPPG Sbjct: 24 DASPLPEEASPAREDGLRPRRLEDYIGQRELKQVLAIAVKAAMGRGDALDHVLLYGPPGL 83 Query: 308 GKTTTALAIAYQL 346 GKTT A+ +A +L Sbjct: 84 GKTTMAMVLAEEL 96
>RFCL_METTH (O26342) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) (mthRFC large subunit) Length = 479 Score = 47.0 bits (110), Expect = 2e-05 Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 4/79 (5%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLET--ADLPH--MLFYGPPGTGKTTTALAIAYQL 346 W EKYRP +V ++V+ + ++ A P +L GPPGTGKTT A I + Sbjct: 3 WTEKYRPGSFDEVVGNQKVIAEIKEWIKAWKAGKPQKPLLLVGPPGTGKTTLAHIIGKEF 62 Query: 347 YGPELYKARVLELNASDER 403 + LELNASD R Sbjct: 63 -------SDTLELNASDRR 74
>RFCL_PICTO (Q6L0P4) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) Length = 410 Score = 47.0 bits (110), Expect = 2e-05 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 5/80 (6%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLET-----ADLPHMLFYGPPGTGKTTTALAIAYQ 343 W +KYRP + ++ + + + ++ ++ YG PGTGKTTTA IA Sbjct: 3 WADKYRPVDISELIMPSDELNSIIRWADSWRNNEVIKKSLILYGDPGTGKTTTATVIANY 62 Query: 344 LYGPELYKARVLELNASDER 403 L P ++E+NASDER Sbjct: 63 LNVP------LIEMNASDER 76
>WRIP1_RAT (Q8CG07) ATPase WRNIP1 (Werner helicase-interacting protein 1)| Length = 660 Score = 46.6 bits (109), Expect = 3e-05 Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Frame = +2 Query: 173 QPWVEKYRPRQVKDVAHQEEVV---RVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQ 343 +P +K RP ++D Q V +L + LET ++P ++ +GPPG GKTT A IA Sbjct: 220 KPLADKMRPDTLQDYIGQSRAVGQETLLRSLLETNEIPSLILWGPPGCGKTTLAHIIA-- 277 Query: 344 LYGPELYKARVLELNASDERXINVVRTKIK 433 + + R + L+A++ + N VR IK Sbjct: 278 -NNSKKHSIRFVTLSATNAKT-NDVRDVIK 305
>RFC1_SCHPO (O60182) Probable activator 1 subunit 1 (Replication factor C| subunit 1) (Replication factor C1) Length = 934 Score = 46.2 bits (108), Expect = 4e-05 Identities = 34/96 (35%), Positives = 42/96 (43%), Gaps = 17/96 (17%) Frame = +2 Query: 167 PSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETAD-----------------LPHMLFYG 295 PSQ W KY P +KD+ + VV+ L L+ +L G Sbjct: 357 PSQIWTSKYAPTSLKDICGNKGVVQKLQKWLQDYHKNRKSNFNKPGPDGLGLYKAVLLSG 416 Query: 296 PPGTGKTTTALAIAYQLYGPELYKARVLELNASDER 403 PPG GKTT A +A +L VLELNASD R Sbjct: 417 PPGIGKTTAAHLVA------KLEGYDVLELNASDTR 446
>RUVB_SYNSC (Q3AND8) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 348 Score = 46.2 bits (108), Expect = 4e-05 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Frame = +2 Query: 146 EMAPLVPPSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTG 310 + AP S+P +K RP+++ D Q E+ +VL ++ A L H+L YGPPG G Sbjct: 23 QQAPEEVVSRP-EDKLRPQRLDDYIGQSELKQVLGIAVQAALGRGDALDHVLLYGPPGLG 81 Query: 311 KTTTALAIAYQL 346 KTT A+ +A ++ Sbjct: 82 KTTMAMVLAEEM 93
>RUVB_SYNPX (Q7U9W7) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 348 Score = 45.8 bits (107), Expect = 5e-05 Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQL 346 RP+++ D Q+E+ +VL ++ A L H+L YGPPG GKTT AL +A +L Sbjct: 37 RPKRLDDYIGQDELKQVLGIAVQAALGRGDALDHVLLYGPPGLGKTTMALVLAEEL 92
>RUVB_SYNAS (Q2LRA8) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 340 Score = 45.4 bits (106), Expect = 7e-05 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RP +K+ Q+++ + L +E A L H+L YGPPG GKTT AL IA ++ Sbjct: 23 RPHSIKEYVGQKKIKKTLPIFVEAAQKRKEALDHVLLYGPPGLGKTTLALIIAREM 78
>RUVB_SYNEL (Q8DGR1) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 363 Score = 45.4 bits (106), Expect = 7e-05 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 5/59 (8%) Frame = +2 Query: 185 EKYRPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 + RP ++D Q+E+ VL ++ A L H+L YGPPG GKTT AL +A ++ Sbjct: 36 DSLRPHSLQDYIGQQELKEVLHIAIQAAKARQEPLDHLLLYGPPGLGKTTIALILAAEM 94
>RUVB_SYNS9 (Q3B0J1) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 347 Score = 45.4 bits (106), Expect = 7e-05 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Frame = +2 Query: 185 EKYRPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQL 346 + RP+++ + Q E+ +VL +E A L H+L YGPPG GKTT AL +A +L Sbjct: 35 DSLRPKRLSEYIGQSELKQVLGIAVEAALGRGEALDHVLLYGPPGLGKTTMALVLAEEL 93
>DPO3X_MYCPN (P75177) DNA polymerase III gamma/tau subunit (EC 2.7.7.7)| Length = 681 Score = 45.1 bits (105), Expect = 9e-05 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Frame = +2 Query: 185 EKYRPRQVKDVAHQEEVVRVLTNTLETADLPH-MLFYGPPGTGKTTTALAIA 337 +KYRP + D Q+ + R++ N + LPH +F G GTGKTT A IA Sbjct: 7 QKYRPTKFSDTVGQDSIKRIIVNAITQDQLPHGYIFAGERGTGKTTFAKIIA 58
>RUVB_GLOVI (Q7NGP9) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 376 Score = 44.7 bits (104), Expect = 1e-04 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Frame = +2 Query: 185 EKYRPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQL 346 E RP+ + D A Q+++ VL + A L H+LFYGPPG GKT+ +L +A ++ Sbjct: 45 ESLRPKNLVDYAGQKDLKAVLGIAVAAAKSRGESLDHLLFYGPPGLGKTSISLILAREM 103
>RUVB_PROMT (Q46IJ6) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 356 Score = 44.7 bits (104), Expect = 1e-04 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 5/59 (8%) Frame = +2 Query: 185 EKYRPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQL 346 + RP+ D Q E+ +VL +++ + L H++ YGPPG GKTT AL IA +L Sbjct: 38 DSLRPKSFDDFVGQSELKKVLEISVKASLKRGEALDHLMLYGPPGLGKTTMALVIAEEL 96
>WRIP1_MOUSE (Q91XU0) ATPase WRNIP1 (Werner helicase-interacting protein 1)| Length = 660 Score = 44.7 bits (104), Expect = 1e-04 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 3/90 (3%) Frame = +2 Query: 173 QPWVEKYRPRQVKDVAHQEEVV---RVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQ 343 +P +K RP ++D Q V +L + LE ++P ++ +GPPG GKTT A IA Sbjct: 220 KPLADKMRPDTLQDYIGQSRAVGQETLLRSLLEANEIPSLILWGPPGCGKTTLAHIIA-- 277 Query: 344 LYGPELYKARVLELNASDERXINVVRTKIK 433 + + R + L+A++ + N VR IK Sbjct: 278 -NNSKKHSIRFVTLSATNAKT-NDVRDVIK 305
>RFCL_THEVO (Q97BC2) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) Length = 420 Score = 44.7 bits (104), Expect = 1e-04 Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 5/80 (6%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLE-----TADLPHMLFYGPPGTGKTTTALAIAYQ 343 W +KYRP++++D+ EE+ + + + ++ + ++ YG G+GKT+ A AIA Sbjct: 3 WADKYRPKRIEDLIVSEEIRQKIQSWIDAWEEGSPKKRALILYGVQGSGKTSAAYAIAGT 62 Query: 344 LYGPELYKARVLELNASDER 403 P V+E+NAS++R Sbjct: 63 FGLP------VVEMNASEQR 76
>WRIP1_HUMAN (Q96S55) ATPase WRNIP1 (Werner helicase-interacting protein 1)| Length = 665 Score = 44.3 bits (103), Expect = 2e-04 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Frame = +2 Query: 173 QPWVEKYRPRQVKDVAHQEEVV---RVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQ 343 +P + RP ++D Q + V +L + LET ++P ++ +GPPG GKTT A IA Sbjct: 225 KPLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIA-- 282 Query: 344 LYGPELYKARVLELNASDERXINVVRTKIK 433 + + R + L+A++ + N VR IK Sbjct: 283 -SNSKKHSIRFVTLSATNAKT-NDVRDVIK 310
>RUVB_SYNP7 (Q31Q03) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 375 Score = 43.9 bits (102), Expect = 2e-04 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 5/64 (7%) Frame = +2 Query: 170 SQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAI 334 SQ ++ RP+++ D Q E+ VL + A L H+L YGPPG GKTT AL + Sbjct: 41 SQRPEDQIRPQRLADYIGQPELKDVLGIAIAAAKSRQESLDHLLLYGPPGLGKTTMALVL 100 Query: 335 AYQL 346 A ++ Sbjct: 101 ATEM 104
>RUVB_SYNP6 (Q5N474) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 375 Score = 43.9 bits (102), Expect = 2e-04 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 5/64 (7%) Frame = +2 Query: 170 SQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAI 334 SQ ++ RP+++ D Q E+ VL + A L H+L YGPPG GKTT AL + Sbjct: 41 SQRPEDQIRPQRLADYIGQPELKDVLGIAIAAAKSRQESLDHLLLYGPPGLGKTTMALVL 100 Query: 335 AYQL 346 A ++ Sbjct: 101 ATEM 104
>RUVB_BACSK (Q5WHR5) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 333 Score = 43.5 bits (101), Expect = 3e-04 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 5/58 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLYG 352 RP+++ D QE V L +E A L H+L YGPPG GKTT A IA ++ G Sbjct: 22 RPKRLADYIGQETVKHNLAVFMEAAKMREEALDHVLLYGPPGLGKTTLAAIIAAEMGG 79
>RUVB_WOLPM (P61539) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 326 Score = 43.5 bits (101), Expect = 3e-04 Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 17/92 (18%) Frame = +2 Query: 194 RPRQVKDVAHQEEVV---RVLTNTLETAD--LPHMLFYGPPGTGKTTTALAIAYQL---- 346 RP Q+ D Q++++ +V N +T L H+L YGPPG GKTT A ++ +L Sbjct: 20 RPEQLDDFVGQKDLIQNLKVFINAAQTRTEALDHVLLYGPPGLGKTTLAQIVSKELRVSF 79 Query: 347 ---YGPELYKARVL-----ELNASDERXINVV 418 GP L KA L LNA D I+ + Sbjct: 80 RATSGPLLSKAGDLAAVLTTLNAKDVLFIDEI 111
>RUVB_SYNY3 (Q57396) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 361 Score = 43.5 bits (101), Expect = 3e-04 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 9/76 (11%) Frame = +2 Query: 146 EMAPLVPPSQPWVEKY----RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGP 298 E+ P + P +E+ RP+++ D Q ++ VL ++ A + H+L YGP Sbjct: 23 EVIPQERSTSPELEQQEASLRPQRLADYIGQRDLKEVLRIAIQAAQGRQEAIDHLLLYGP 82 Query: 299 PGTGKTTTALAIAYQL 346 PG GKTT AL +A ++ Sbjct: 83 PGLGKTTLALILAEEM 98
>RFCL_HALSA (Q9HPI4) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) Length = 471 Score = 43.1 bits (100), Expect = 4e-04 Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 2/82 (2%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLET--ADLPHMLFYGPPGTGKTTTALAIAYQLYG 352 W EKYRP + +V + L ET ++ +G PG GKT+ A A+A Sbjct: 4 WTEKYRPASLSEVRGNDTARDALAEWAETWPDHREAVVVHGSPGIGKTSAAHALANDAGW 63 Query: 353 PELYKARVLELNASDERXINVV 418 V+ELNASD+R +VV Sbjct: 64 D------VVELNASDQRTADVV 79
>RUVB_COXBU (Q83BE0) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 351 Score = 43.1 bits (100), Expect = 4e-04 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 15/85 (17%) Frame = +2 Query: 161 VPPSQPWVEK-YRPRQVKDVAHQEEV-------VRVLTNTLETADLPHMLFYGPPGTGKT 316 V ++P +E+ RP+++ D Q V +R TN E D H+L +GPPG GKT Sbjct: 14 VQSNEPDLERSIRPKRLSDYIGQAAVREQMDIFIRAATNRREALD--HVLIFGPPGLGKT 71 Query: 317 TTALAIAYQLY-------GPELYKA 370 T A IA+++ GP L KA Sbjct: 72 TLAHIIAHEMQAGLKQTSGPVLEKA 96
>RUVB_LISMO (Q8Y6Z8) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 335 Score = 42.7 bits (99), Expect = 5e-04 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETADL-----PHMLFYGPPGTGKTTTALAIAYQL 346 RP+ + Q++V LT +E A L H+L YGPPG GKTT A+ IA ++ Sbjct: 23 RPQNLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLYGPPGLGKTTLAMVIASEM 78
>RUVB_LISMF (Q71ZD8) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 335 Score = 42.7 bits (99), Expect = 5e-04 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETADL-----PHMLFYGPPGTGKTTTALAIAYQL 346 RP+ + Q++V LT +E A L H+L YGPPG GKTT A+ IA ++ Sbjct: 23 RPQNLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLYGPPGLGKTTLAMVIAAEM 78
>RUVB_ANAVT (Q3MEF4) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 366 Score = 42.7 bits (99), Expect = 5e-04 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 5/59 (8%) Frame = +2 Query: 185 EKYRPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 E RP++ D Q+++ VL ++ A L H+L YGPPG GKTT A+ +A ++ Sbjct: 47 ESIRPQKFADYIGQKDLKDVLDIAIKAAKSRGEVLDHLLLYGPPGLGKTTMAMILASEM 105
>RUVB_ANASP (Q8YT32) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 366 Score = 42.7 bits (99), Expect = 5e-04 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 5/59 (8%) Frame = +2 Query: 185 EKYRPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 E RP++ D Q+++ VL ++ A L H+L YGPPG GKTT A+ +A ++ Sbjct: 47 ESIRPQRFADYIGQKDLKDVLDIAIKAAKSRGEVLDHLLLYGPPGLGKTTMAMILASEM 105
>RUVB_SYMTH (Q67Q97) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 347 Score = 42.7 bits (99), Expect = 5e-04 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 5/59 (8%) Frame = +2 Query: 185 EKYRPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 E RP+++ D QE V L+ + A L H+L YGPPG GKTT A IA+++ Sbjct: 20 ETLRPQRLADYPGQERVKEQLSIYIAAAKKRGEPLDHVLLYGPPGLGKTTLAHIIAHEM 78
>RUVB_BURCE (Q93LP2) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 355 Score = 42.7 bits (99), Expect = 5e-04 Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RPRQ+ D QE+V L +E A L H+L +GPPG GKTT A IA ++ Sbjct: 30 RPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGPPGLGKTTLAHIIAREM 85
>PEX6_YARLI (P36966) Peroxisomal biogenesis factor 6 (Peroxin-6) (Peroxisome| biosynthesis protein PAY4) Length = 1024 Score = 42.7 bits (99), Expect = 5e-04 Identities = 32/89 (35%), Positives = 41/89 (46%), Gaps = 19/89 (21%) Frame = +2 Query: 212 DVAHQEEVVRVLTNTLETA-DLPH-----------MLFYGPPGTGKTTTALAIA------ 337 DV E V + + +T+ET PH +LFYGPPGTGKT A AIA Sbjct: 720 DVGGMEGVKKDILDTIETPLKYPHWFSDGVKKRSGILFYGPPGTGKTLLAKAIATTFSLN 779 Query: 338 -YQLYGPELYKARVLELNASDERXINVVR 421 + + GPEL + E A+ R R Sbjct: 780 FFSVKGPELLNMYIGESEANVRRVFQKAR 808
>RUVB_TREPA (P96115) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 350 Score = 42.7 bits (99), Expect = 5e-04 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 8/74 (10%) Frame = +2 Query: 149 MAPLVPPSQPWVEK---YRPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPG 304 ++P+ P +QP ++ RPR +KD QE+ R L ++ A L H+ GPPG Sbjct: 7 LSPVRPEAQPTDDRERALRPRLLKDFLGQEKTKRNLRLFIQAARDRNESLDHLFLIGPPG 66 Query: 305 TGKTTTALAIAYQL 346 GKTT A A +L Sbjct: 67 LGKTTLAHITACEL 80
>RUVB_BURS3 (Q39JJ1) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 356 Score = 42.7 bits (99), Expect = 5e-04 Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RPRQ+ D QE+V L +E A L H+L +GPPG GKTT A IA ++ Sbjct: 31 RPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGPPGLGKTTLAHIIAREM 86
>RUVB_LISIN (Q92BI2) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 335 Score = 42.4 bits (98), Expect = 6e-04 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETADL-----PHMLFYGPPGTGKTTTALAIAYQL 346 RP+ + Q++V LT +E A L H+L YGPPG GKTT A+ IA ++ Sbjct: 23 RPQTLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLYGPPGLGKTTLAMVIASEM 78
>CHL12_YEAST (P49956) Protein CHL12| Length = 741 Score = 42.0 bits (97), Expect = 8e-04 Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 29/113 (25%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTL-------------------ETADLPH------- 280 WVEK+RP++ D+ E+ R + L E +D+ Sbjct: 116 WVEKWRPKKFLDLVGNEKTNRRMLGWLRQWTPAVFKEQLPKLPTEKEVSDMELDPLKRPP 175 Query: 281 ---MLFYGPPGTGKTTTALAIAYQLYGPELYKARVLELNASDERXINVVRTKI 430 +L +GPPG GKT+ A IA Q V E+NASDER +V+ KI Sbjct: 176 KKILLLHGPPGIGKTSVAHVIAKQ------SGFSVSEINASDERAGPMVKEKI 222
>RUVB_CARHZ (Q3ABY0) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 339 Score = 42.0 bits (97), Expect = 8e-04 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RPR++ + Q++V ++ +E A L H+L +GPPG GKTT A IA +L Sbjct: 21 RPRRLSEYIGQQKVKETISIFIEAAKKRNEALDHVLLFGPPGLGKTTLATIIANEL 76
>DPO3X_MYCGE (P47658) DNA polymerase III gamma/tau subunit (EC 2.7.7.7)| Length = 597 Score = 42.0 bits (97), Expect = 8e-04 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Frame = +2 Query: 173 QPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPH-MLFYGPPGTGKTTTALAIA 337 Q + +KYRP K QE + ++L N + LP+ +F G GTGKTT A IA Sbjct: 3 QVFYQKYRPINFKQTLGQESIRKILVNAINRDKLPNGYIFSGERGTGKTTFAKIIA 58
>RUVB_PROMP (Q7UZP3) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 352 Score = 41.6 bits (96), Expect = 0.001 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RP K+ QE++ L +E + L H L YG PG GKTT AL I+Y++ Sbjct: 41 RPNSFKEFIGQEQIKSSLKIAIEASKYRKEALEHTLLYGQPGLGKTTLALLISYEM 96
>RUVB_THIDN (Q30PX6) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 337 Score = 41.6 bits (96), Expect = 0.001 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RP + QE++ + L +E + L H+LFYGPPG GKTT AL IA ++ Sbjct: 21 RPSAWNEYIGQEQIKKNLGVFIEASKKRAEALDHVLFYGPPGLGKTTLALIIANEM 76
>DPA44_BPT4 (P04526) DNA polymerase accessory protein 44 (Protein Gp44) (Clamp| loader large subunit) Length = 319 Score = 41.6 bits (96), Expect = 0.001 Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 4/99 (4%) Frame = +2 Query: 185 EKYRPRQVKDV---AHQEEVVRVLTNTLETADLPHMLFYGP-PGTGKTTTALAIAYQLYG 352 +KYRP + + A +E + +T+ +PH++ + P PGTGKTT A A+ + + Sbjct: 13 QKYRPSTIDECILPAFDKETFKSITSK---GKIPHIILHSPSPGTGKTTVAKALCHDV-- 67 Query: 353 PELYKARVLELNASDERXINVVRTKIKDFAAVAVGSARK 469 A ++ +N SD + I+ VR + +FA+ A R+ Sbjct: 68 ----NADMMFVNGSDCK-IDFVRGPLTNFASAASFDGRQ 101
>RUVB_THETN (Q8RAN2) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 338 Score = 41.2 bits (95), Expect = 0.001 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RPR + + QE++ + L +E A L H+L YGPPG GKTT A I+ ++ Sbjct: 21 RPRWLSEYIGQEKIKQELKIYIEAAKKRGEPLDHVLLYGPPGLGKTTLATVISNEM 76
>RUVB_ENTFA (Q839T5) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 338 Score = 41.2 bits (95), Expect = 0.001 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RP+ + Q++V + LT +E A L H L YGPPG GKTT A+ IA ++ Sbjct: 24 RPQFLAQYIGQDKVKQELTIYIEAAKNRNEALDHTLLYGPPGLGKTTMAMVIANEM 79
>RUVB_THET2 (P61537) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 336 Score = 41.2 bits (95), Expect = 0.001 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RP+ + + QE + + L LE A L H+L +GPPG GKTT A IA++L Sbjct: 19 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 74
>RUVB_THEMA (Q56313) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 334 Score = 41.2 bits (95), Expect = 0.001 Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 5/60 (8%) Frame = +2 Query: 182 VEKYRPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 V+ RP+ + + QE V + L+ LE A L H+L GPPG GKTT A IA +L Sbjct: 16 VQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75
>RUVB_BURTA (Q2SZ55) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 356 Score = 41.2 bits (95), Expect = 0.001 Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RPRQ+ + QE+V L +E A L H+L +GPPG GKTT A IA ++ Sbjct: 30 RPRQLDEYVGQEKVRDQLEIFIEAAKRRAEALDHVLLFGPPGLGKTTLAHIIAREM 85
>RUVB_BURPS (Q63QX5) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 356 Score = 41.2 bits (95), Expect = 0.001 Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RPRQ+ + QE+V L +E A L H+L +GPPG GKTT A IA ++ Sbjct: 30 RPRQLDEYVGQEKVRDQLEIFIEAAKRRSEALDHVLLFGPPGLGKTTLAHIIAREM 85
>RUVB_BURP1 (Q3JNS5) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 356 Score = 41.2 bits (95), Expect = 0.001 Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RPRQ+ + QE+V L +E A L H+L +GPPG GKTT A IA ++ Sbjct: 30 RPRQLDEYVGQEKVRDQLEIFIEAAKRRSEALDHVLLFGPPGLGKTTLAHIIAREM 85
>RUVB_BURMA (Q62HA9) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 356 Score = 41.2 bits (95), Expect = 0.001 Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RPRQ+ + QE+V L +E A L H+L +GPPG GKTT A IA ++ Sbjct: 30 RPRQLDEYVGQEKVRDQLEIFIEAAKRRSEALDHVLLFGPPGLGKTTLAHIIAREM 85
>RUVB_THETH (Q56214) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 324 Score = 41.2 bits (95), Expect = 0.001 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RP+ + + QE + + L LE A L H+L +GPPG GKTT A IA++L Sbjct: 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62
>RUVB_THET8 (Q5SL87) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 324 Score = 41.2 bits (95), Expect = 0.001 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RP+ + + QE + + L LE A L H+L +GPPG GKTT A IA++L Sbjct: 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62
>RUVB_MYCH2 (Q600N3) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 318 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIA 337 RP ++ Q+++V L + ++ L H+LFYGPPGTGKTT A +A Sbjct: 8 RPSSFENFIGQKKLVETLQILISSSQKRKQSLDHILFYGPPGTGKTTLANIVA 60
>RUVB_ANAMM (Q5PBM1) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 331 Score = 40.8 bits (94), Expect = 0.002 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 12/71 (16%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQL---- 346 RP +++ Q EV++ L +++A + H+L YGPPG GKTT A IA +L Sbjct: 22 RPCLIEEFVGQTEVIKNLKVFIQSAYERREPMDHVLLYGPPGLGKTTLAHIIAKELKVNF 81 Query: 347 ---YGPELYKA 370 GP L KA Sbjct: 82 RSTAGPLLSKA 92
>RUVB_IDILO (Q5QYU5) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 339 Score = 40.8 bits (94), Expect = 0.002 Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 12/71 (16%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL---- 346 RP+ + D Q+ VV + +E A L H+L +GPPG GKTT A +A +L Sbjct: 29 RPKTLADYTGQKHVVEQMGIFIEAARKRQEALDHLLIFGPPGLGKTTLANIVANELDVSI 88 Query: 347 ---YGPELYKA 370 GP L KA Sbjct: 89 KTTSGPVLEKA 99
>RUVB_MYCHJ (Q4A9R6) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 312 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIA 337 RP ++ Q+++V L + ++ L H+LFYGPPGTGKTT A +A Sbjct: 2 RPSSFENFIGQKKLVETLQILISSSQKRKQSLDHILFYGPPGTGKTTLANIVA 54
>RUVB_MYCH7 (Q4A7W4) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 312 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIA 337 RP ++ Q+++V L + ++ L H+LFYGPPGTGKTT A +A Sbjct: 2 RPSSFENFIGQKKLVETLQILISSSQKRKQSLDHILFYGPPGTGKTTLANIVA 54
>MGS1_YEAST (P40151) DNA-dependent ATPase MGS1 (Maintenance of genome stability| protein 1) Length = 587 Score = 40.8 bits (94), Expect = 0.002 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 4/54 (7%) Frame = +2 Query: 176 PWVEKYRPRQVKDVAHQEEVVRVLTNTL----ETADLPHMLFYGPPGTGKTTTA 325 P EK RP++++D Q+ ++ TL + +P M+ +GPPG GKT+ A Sbjct: 134 PLSEKLRPKELRDYVGQQHILSQDNGTLFKYIKQGTIPSMILWGPPGVGKTSLA 187
>RUVB_OCEIH (Q8EPQ6) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 334 Score = 40.8 bits (94), Expect = 0.002 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RP + Q++V LT ++ A L H+L YGPPG GKTT A I+Y++ Sbjct: 22 RPSTLSQYIGQDKVKENLTIFIQAAKMREEPLDHVLLYGPPGLGKTTLASIISYEM 77
>RUVB_WOLTR (Q5GT33) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 326 Score = 40.8 bits (94), Expect = 0.002 Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 17/92 (18%) Frame = +2 Query: 194 RPRQVKDVAHQEEVV---RVLTNTLETAD--LPHMLFYGPPGTGKTTTALAIAYQL---- 346 RP Q+ D Q++++ +V N +T L H+L +GPPG GKTT A I+ +L Sbjct: 20 RPEQLDDFFGQKDLIQNLKVFINAAKTRTEALDHVLLHGPPGLGKTTLAQIISKELRVSF 79 Query: 347 ---YGPELYKARVL-----ELNASDERXINVV 418 GP L KA L LNA D I+ + Sbjct: 80 RATSGPLLNKAGDLAAVLTTLNAKDVLFIDEI 111
>RUVB_LACSS (Q38YQ9) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 335 Score = 40.8 bits (94), Expect = 0.002 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQL 346 RP+ + Q+ V L +E A L H+L YGPPG GKTT A+ IA +L Sbjct: 24 RPQVLAQYIGQDRVKNELAVYIEAAKKREESLDHVLLYGPPGLGKTTLAMVIANEL 79
>DPO3X_BUCBP (Q89A95) DNA polymerase III gamma subunit (EC 2.7.7.7)| Length = 370 Score = 40.8 bits (94), Expect = 0.002 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Frame = +2 Query: 185 EKYRPRQVKDVAHQEEVVRVLTNTLETADLPHM-LFYGPPGTGKTTTALAIAYQL 346 +K+RP+ DV Q+ +V ++N+L + H LF+G GTGKTT A +A L Sbjct: 8 KKWRPQTFNDVIGQQYIVSAISNSLLLGRIHHAWLFFGIRGTGKTTIARILAKSL 62
>RUVB_RICPR (Q9ZDE5) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 342 Score = 40.4 bits (93), Expect = 0.002 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 5/58 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLYG 352 RP +K+ Q+++ L ++ A L H LFYGPPG GKTT A I+ ++ G Sbjct: 19 RPSYLKEFVGQQQIKENLLVFIKAAKSRNEHLDHTLFYGPPGLGKTTLAKIISNEIGG 76
>RUVB_WOLSU (Q7M879) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 335 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RP D QE++ R L +E A L H+LF+GPPG GKTT A I++++ Sbjct: 21 RPSGWDDYIGQEKIKRNLGVFIEAAKRRGEGLDHILFFGPPGLGKTTLAHIISHEM 76
>RUVB_BRAJA (Q89U80) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 351 Score = 40.4 bits (93), Expect = 0.002 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RP+ + D Q++ + L+ +E A L H+LF GPPG GKTT A +A +L Sbjct: 25 RPQSLSDFVGQQQARKNLSIFIEAARKRGEALDHVLFVGPPGLGKTTLAQIVAKEL 80
>RUVB_CLOTE (Q891Z8) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 345 Score = 40.0 bits (92), Expect = 0.003 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 5/58 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQLYG 352 RP Q+++ Q +V L ++ A L H+L YGPPG GKTT A IA ++ G Sbjct: 25 RPTQLEEYIGQSKVREKLRIFIKAAKNRGESLDHVLLYGPPGLGKTTLANIIAKEMKG 82
>RUVB_STRA5 (Q8E2D9) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 332 Score = 40.0 bits (92), Expect = 0.003 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQL 346 RP+ +++ Q++V L +E A L H+L +GPPG GKTT A IA +L Sbjct: 21 RPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANEL 76
>RUVB_STRA3 (Q8E7U6) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 332 Score = 40.0 bits (92), Expect = 0.003 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQL 346 RP+ +++ Q++V L +E A L H+L +GPPG GKTT A IA +L Sbjct: 21 RPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANEL 76
>RUVB_STRA1 (Q3K3X8) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 332 Score = 40.0 bits (92), Expect = 0.003 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQL 346 RP+ +++ Q++V L +E A L H+L +GPPG GKTT A IA +L Sbjct: 21 RPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANEL 76
>YCAJ_ECOLI (P0AAZ4) Hypothetical protein ycaJ| Length = 447 Score = 40.0 bits (92), Expect = 0.003 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%) Frame = +2 Query: 173 QPWVEKYRPRQVKDVAHQEEVV---RVLTNTLETADLPHMLFYGPPGTGKTTTALAIA 337 QP + RP + Q+ ++ + L +E L M+ +GPPGTGKTT A IA Sbjct: 14 QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIA 71
>YCAJ_ECOL6 (P0AAZ5) Hypothetical protein ycaJ| Length = 447 Score = 40.0 bits (92), Expect = 0.003 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%) Frame = +2 Query: 173 QPWVEKYRPRQVKDVAHQEEVV---RVLTNTLETADLPHMLFYGPPGTGKTTTALAIA 337 QP + RP + Q+ ++ + L +E L M+ +GPPGTGKTT A IA Sbjct: 14 QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIA 71
>YCAJ_ECO57 (P0AAZ6) Hypothetical protein ycaJ| Length = 447 Score = 40.0 bits (92), Expect = 0.003 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%) Frame = +2 Query: 173 QPWVEKYRPRQVKDVAHQEEVV---RVLTNTLETADLPHMLFYGPPGTGKTTTALAIA 337 QP + RP + Q+ ++ + L +E L M+ +GPPGTGKTT A IA Sbjct: 14 QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIA 71
>RUVB_NITEU (Q82XP4) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 346 Score = 39.7 bits (91), Expect = 0.004 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETADL-----PHMLFYGPPGTGKTTTALAIAYQL 346 RP Q+ D QE++ L +E A L H+L +GPPG GKTT A IA ++ Sbjct: 25 RPVQLDDYVGQEKIREQLKIFIEAARLRQEALDHVLLFGPPGLGKTTLAHIIAREM 80
>RUVB_XYLFT (Q87D00) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 343 Score = 39.7 bits (91), Expect = 0.004 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEV-----VRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQL 346 RP+++ D Q+ V + + L H+L +GPPG GKTT + IAY+L Sbjct: 21 RPKRLADYLGQQPVREQMDIYIQATKARAEALDHVLIFGPPGLGKTTLSHVIAYEL 76
>RUVB_XYLFA (Q9PC79) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 343 Score = 39.7 bits (91), Expect = 0.004 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEV-----VRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQL 346 RP+++ D Q+ V + + L H+L +GPPG GKTT + IAY+L Sbjct: 21 RPKRLADYLGQQPVREQMDIYIQATKARAEALDHVLIFGPPGLGKTTLSHVIAYEL 76
>RUVB_CLOAB (Q97GT1) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 349 Score = 39.7 bits (91), Expect = 0.004 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 5/58 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLYG 352 RP+++ + Q +V + + A L H+LFYGPPG GKTT A IA ++ G Sbjct: 21 RPQKLNEYIGQSKVKEKMDIFIRAAKKRGEALDHVLFYGPPGLGKTTLANIIAKEMGG 78
>RFCL_NATPD (Q3ISA5) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) Length = 483 Score = 39.7 bits (91), Expect = 0.004 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 2/97 (2%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLETAD--LPHMLFYGPPGTGKTTTALAIAYQLYG 352 W E YRP + +V + + + ++ +G PG GKT+ A A+A + Sbjct: 4 WTEAYRPTTLSEVRGNNKARDAFEEWAKAWEDHREAVILHGSPGVGKTSAAHALANDMGW 63 Query: 353 PELYKARVLELNASDERXINVVRTKIKDFAAVAVGSA 463 P VLE+NASD R + +I+ FA A +A Sbjct: 64 P------VLEMNASDAR----TKDEIERFAGRAASNA 90
>RUVB_STRR6 (Q8CWU7) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 332 Score = 39.7 bits (91), Expect = 0.004 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RP+ +++ Q++V L +E A L H+L +GPPG GKTT A IA +L Sbjct: 21 RPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANEL 76
>RUVB_STRPN (Q97SR6) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 332 Score = 39.7 bits (91), Expect = 0.004 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RP+ +++ Q++V L +E A L H+L +GPPG GKTT A IA +L Sbjct: 21 RPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANEL 76
>RUVB_SHEON (Q8EEF3) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 334 Score = 39.7 bits (91), Expect = 0.004 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 12/71 (16%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL---- 346 RP+ + + Q++ L ++ A L HML YGPPG GKTT A+ +A ++ Sbjct: 24 RPKLLDEYTGQDDTRAQLKVFIQAAKNREEALDHMLIYGPPGLGKTTLAMIVANEMGVNI 83 Query: 347 ---YGPELYKA 370 GP L KA Sbjct: 84 KSTSGPVLEKA 94
>RUVB_BACLD (Q65GP6) Holliday junction DNA helicase ruvB| Length = 334 Score = 39.7 bits (91), Expect = 0.004 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 5/59 (8%) Frame = +2 Query: 185 EKYRPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 + RP+++ QE+V L +E A L H+L YGPPG GKTT A IA ++ Sbjct: 19 QSLRPQRLAQYIGQEKVKDNLKVFIEAAKMREETLDHVLLYGPPGLGKTTLAAIIANEM 77
>RUVB_RICFE (Q4ULW6) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 342 Score = 39.7 bits (91), Expect = 0.004 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 5/58 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLYG 352 RP +++ Q+++ L+ ++ A L H LFYGPPG GKTT A I+ ++ G Sbjct: 19 RPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGLGKTTLAKIISNEIGG 76
>RUVB_RICCN (Q92I87) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 342 Score = 39.7 bits (91), Expect = 0.004 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 5/58 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLYG 352 RP +++ Q+++ L+ ++ A L H LFYGPPG GKTT A I+ ++ G Sbjct: 19 RPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGLGKTTLAKIISNEIGG 76
>Y1590_HAEIN (P45262) Hypothetical protein HI1590| Length = 446 Score = 39.7 bits (91), Expect = 0.004 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%) Frame = +2 Query: 176 PWVEKYRPRQVKDVAHQEEVV---RVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQL 346 P K RP ++ Q ++ + L ++ + M+F+GPPGTGKTT A IA ++ Sbjct: 15 PLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIYSMIFWGPPGTGKTTLAEIIAQRI 74
>RUVB_MYCPU (Q98PR1) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 315 Score = 39.7 bits (91), Expect = 0.004 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 5/59 (8%) Frame = +2 Query: 185 EKYRPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 ++ RP+ D Q ++ ++L + +A L H+LFYG PGTGKT+ A I+ L Sbjct: 5 QEIRPKNFSDFVGQNKLKKLLKVMISSAQVQNRPLDHILFYGNPGTGKTSLASIISNSL 63
>PEX6_YEAST (P33760) Peroxisomal biogenesis factor 6 (Peroxin-6) (Peroxisome| biosynthesis protein PAS8) Length = 1030 Score = 39.3 bits (90), Expect = 0.005 Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 7/54 (12%) Frame = +2 Query: 281 MLFYGPPGTGKTTTALAIA-------YQLYGPELYKARVLELNASDERXINVVR 421 +LFYGPPGTGKT A AIA + + GPEL + E A+ R R Sbjct: 768 ILFYGPPGTGKTLMAKAIATNFSLNFFSVKGPELLNMYIGESEANVRRVFQKAR 821
>RUVB_RHOBA (Q7UPG4) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 366 Score = 39.3 bits (90), Expect = 0.005 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RP+++ ++ Q++V+ L ++ A L H+LF GPPG GKTT A I ++ Sbjct: 52 RPQRMAEMVGQQDVIERLRIAIDAAQVRGEPLGHILFDGPPGLGKTTFATVIPSEM 107
>RUVB_GEOSL (P61532) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 338 Score = 39.3 bits (90), Expect = 0.005 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RPR ++D QE+ L ++ A L H+L YGPPG GKTT A IA ++ Sbjct: 21 RPRALEDYIGQEKAKGNLRVFIDAARKRGEALDHVLLYGPPGLGKTTLANIIACEM 76
>RUVB_MOOTA (Q2RHT7) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 336 Score = 39.3 bits (90), Expect = 0.005 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RPR + + QE V L ++ A L H+L YGPPG GKTT A IA +L Sbjct: 23 RPRCLAEYIGQEHVKETLGIFIQAARERGEALDHVLLYGPPGLGKTTLAGIIANEL 78
>RUVB_LACAC (Q5FLX2) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 349 Score = 39.3 bits (90), Expect = 0.005 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 12/80 (15%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL---- 346 RP+ + Q+ V + ++ ++ A L H+L YGPPG GKTT A IA +L Sbjct: 37 RPQTLDQYLGQKRVKKEMSIYIKAARQRDEALDHVLLYGPPGLGKTTLAFVIANELGVHL 96 Query: 347 ---YGPELYKARVLELNASD 397 GP + KA L SD Sbjct: 97 KSTSGPAIEKAGDLVALLSD 116
>PEX6_KLULA (Q6CPV1) Peroxisomal biogenesis factor 6 (Peroxin-6)| Length = 1000 Score = 39.3 bits (90), Expect = 0.005 Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 7/54 (12%) Frame = +2 Query: 281 MLFYGPPGTGKTTTALAIA-------YQLYGPELYKARVLELNASDERXINVVR 421 +LFYGPPGTGKT A AIA + + GPEL + E A+ R R Sbjct: 738 ILFYGPPGTGKTLLAKAIASNFSLNFFSVKGPELLNMYIGESEANVRRVFQKAR 791
>RUVB_STRT2 (Q5M2B1) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 333 Score = 39.3 bits (90), Expect = 0.005 Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 13/79 (16%) Frame = +2 Query: 173 QPWVEK-YRPRQVKDVAHQEEVVRVLTNTLETADL-----PHMLFYGPPGTGKTTTALAI 334 + +VE+ RP+ K+ Q++V L +E A L H L +GPPG GKTT A I Sbjct: 13 EEYVERTLRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVI 72 Query: 335 A-------YQLYGPELYKA 370 A Q GP + KA Sbjct: 73 ANEMGVNLKQTSGPAIEKA 91
>RUVB_STRT1 (Q5LXQ9) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 333 Score = 39.3 bits (90), Expect = 0.005 Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 13/79 (16%) Frame = +2 Query: 173 QPWVEK-YRPRQVKDVAHQEEVVRVLTNTLETADL-----PHMLFYGPPGTGKTTTALAI 334 + +VE+ RP+ K+ Q++V L +E A L H L +GPPG GKTT A I Sbjct: 13 EEYVERTLRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVI 72 Query: 335 A-------YQLYGPELYKA 370 A Q GP + KA Sbjct: 73 ANEMGVNLKQTSGPAIEKA 91
>RUVB_GEOKA (Q5KWR0) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 333 Score = 39.3 bits (90), Expect = 0.005 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETADL-----PHMLFYGPPGTGKTTTALAIAYQL 346 RP+ + + Q+++ L +E A L H+L YGPPG GKTT A+ IA ++ Sbjct: 22 RPQYLHEYIGQDKIKENLKVFIEAAKLREETLDHVLLYGPPGLGKTTLAVIIANEM 77
>RUVB_DEIRA (Q9X719) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 333 Score = 39.3 bits (90), Expect = 0.005 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RP+ + + QE++ L L+ A L H L +GPPG GKTT A IAY+L Sbjct: 12 RPKTLTEYVGQEKLKDKLGVYLQAARGRREALDHTLLFGPPGLGKTTLAHIIAYEL 67
>RUVB_BACHD (Q9KDI8) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 333 Score = 39.3 bits (90), Expect = 0.005 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RP + QE+V + L +E A L H+L YGPPG GKTT + IA +L Sbjct: 22 RPHSFEQYIGQEKVKQNLKVFIEAAKMREEALDHVLLYGPPGLGKTTLSTIIANEL 77
>PEX6_DEBHA (Q6BS73) Peroxisomal biogenesis factor 6 (Peroxin-6)| Length = 1198 Score = 39.3 bits (90), Expect = 0.005 Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 7/54 (12%) Frame = +2 Query: 281 MLFYGPPGTGKTTTALAIA-------YQLYGPELYKARVLELNASDERXINVVR 421 +LFYGPPGTGKT A AIA + + GPEL + E A+ R R Sbjct: 875 ILFYGPPGTGKTLLAKAIATNFSLNFFSVKGPELLNMYIGESEANVRRVFQKAR 928
>PEX6_CANGA (Q6FW67) Peroxisomal biogenesis factor 6 (Peroxin-6)| Length = 1017 Score = 39.3 bits (90), Expect = 0.005 Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 7/54 (12%) Frame = +2 Query: 281 MLFYGPPGTGKTTTALAIA-------YQLYGPELYKARVLELNASDERXINVVR 421 +LFYGPPGTGKT A AIA + + GPEL + E A+ R R Sbjct: 754 ILFYGPPGTGKTLLAKAIATNFSLNFFSVKGPELLNMYIGESEANVRRVFQKAR 807
>RUVB_CLOPE (Q8XJ14) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 346 Score = 39.3 bits (90), Expect = 0.005 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLYG 352 RP ++ + Q++V L ++ A L H++ YGPPG GKTT A IA ++ G Sbjct: 22 RPEKINEYIGQDKVKERLNIFIKAAQRREEALDHVILYGPPGLGKTTLANIIANEMGG 79
>PEX6_PICAN (Q9UVU5) Peroxisomal biogenesis factor 6 (Peroxin-6)| Length = 1135 Score = 39.3 bits (90), Expect = 0.005 Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 7/54 (12%) Frame = +2 Query: 281 MLFYGPPGTGKTTTALAIA-------YQLYGPELYKARVLELNASDERXINVVR 421 +LFYGPPGTGKT A AIA + + GPEL + E A+ R R Sbjct: 849 ILFYGPPGTGKTLLAKAIATNFALNFFSVKGPELLNMYIGESEANVRRVFQKAR 902
>RFC1_MOUSE (P35601) Activator 1 140 kDa subunit (Replication factor C large| subunit) (A1 140 kDa subunit) (RF-C 140 kDa subunit) (Activator 1 large subunit) (A1-P145) (Differentiation-specific element-binding protein) (ISRE-binding protein) Length = 1131 Score = 39.3 bits (90), Expect = 0.005 Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 27/113 (23%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQE-------EVVRVLTNTLET--------------------ADLP 277 WV+KY+P +K++ Q+ +++R L N ++ + Sbjct: 570 WVDKYKPASLKNIIGQQGDQSCANKLLRWLRNWHKSSPEEKKHAAKFGKLASKDDGSSFK 629 Query: 278 HMLFYGPPGTGKTTTALAIAYQLYGPELYKARVLELNASDERXINVVRTKIKD 436 L GPPG GKTTTA + +L +ELNASD R N ++ + + Sbjct: 630 AALLSGPPGVGKTTTASLVCQEL------GYSYVELNASDTRSKNSLKAVVAE 676
>Y508_THEMA (Q9WYX8) UPF0189 protein TM0508| Length = 599 Score = 38.9 bits (89), Expect = 0.007 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Frame = +2 Query: 173 QPWVEKYRPRQVKDVAHQEEVVR---VLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQ 343 +P E RP+ +D Q+ + +L TL+T ++ + YGPPG+GKT+ + Sbjct: 6 KPLSELLRPKDFEDFVGQDHIFGNKGILRRTLKTGNMFSSILYGPPGSGKTSVFSLLKRY 65 Query: 344 LYGPELY 364 G +Y Sbjct: 66 FNGEVVY 72
>PEX6_GLOLA (Q9C1E9) Peroxisomal biogenesis factor 6 (Peroxin-6) (ClaPEX6)| Length = 1388 Score = 38.9 bits (89), Expect = 0.007 Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 7/54 (12%) Frame = +2 Query: 281 MLFYGPPGTGKTTTALAIA-------YQLYGPELYKARVLELNASDERXINVVR 421 +LFYGPPGTGKT A AIA + + GPEL + E A+ R R Sbjct: 1030 ILFYGPPGTGKTLLAKAIATEYSLNFFSVKGPELLNMYIGESEANVRRVFQRAR 1083
>PEX6_PENCH (Q9HG03) Peroxisomal biogenesis factor 6 (Peroxin-6)| Length = 1459 Score = 38.9 bits (89), Expect = 0.007 Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 7/54 (12%) Frame = +2 Query: 281 MLFYGPPGTGKTTTALAIA-------YQLYGPELYKARVLELNASDERXINVVR 421 +LFYGPPGTGKT A AIA + + GPEL + E A+ R R Sbjct: 1066 ILFYGPPGTGKTLLAKAIATEFSLNFFSVKGPELLNMYIGESEANVRRVFQRAR 1119
>PEX6_NEUCR (Q7SGP2) Peroxisomal biogenesis factor 6 (Peroxin-6)| Length = 1381 Score = 38.9 bits (89), Expect = 0.007 Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 7/54 (12%) Frame = +2 Query: 281 MLFYGPPGTGKTTTALAIA-------YQLYGPELYKARVLELNASDERXINVVR 421 +LFYGPPGTGKT A AIA + + GPEL + E A+ R R Sbjct: 1027 ILFYGPPGTGKTLLAKAIATEYSLNFFSVKGPELLNMYIGESEANVRRVFQRAR 1080
>RUVB_RICTY (Q68WZ0) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 342 Score = 38.9 bits (89), Expect = 0.007 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLYG 352 RP +++ Q+++ L ++ A L H LFYGPPG GKTT A I+ ++ G Sbjct: 19 RPSYLQEFVGQQQIKENLLVFIKAAKSRNEHLDHTLFYGPPGLGKTTLAKIISNEIGG 76
>RUVB_PASMU (P57892) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 335 Score = 38.9 bits (89), Expect = 0.007 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 12/71 (16%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETADL-----PHMLFYGPPGTGKTTTALAIAYQL---- 346 RP+ + D Q V + ++ A L H+L +GPPG GKTT A +A+++ Sbjct: 24 RPKLLNDYVGQPHVCEQMAIFIQAAKLRQDALDHLLIFGPPGLGKTTLANIVAHEMGVNI 83 Query: 347 ---YGPELYKA 370 GP L KA Sbjct: 84 RTTSGPVLEKA 94
>RUVB_MAGMM (Q2W2A5) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 347 Score = 38.5 bits (88), Expect = 0.009 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RP+ + D Q +V L + A L H+LF+GPPG GKTT A +A +L Sbjct: 20 RPQSLDDFVGQRQVCENLKVFISAARARGEALDHVLFHGPPGLGKTTLAQIMAREL 75
>RUVB_GEOMG (Q39XN6) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 338 Score = 38.5 bits (88), Expect = 0.009 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RPR + D QE+ L ++ A L H+L YGPPG GKTT A IA ++ Sbjct: 20 RPRALDDYIGQEKAKGNLRVFIDAARKRGEALDHVLLYGPPGLGKTTLANIIACEM 75
>RUVB_LACPL (Q88V03) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 336 Score = 38.5 bits (88), Expect = 0.009 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQL 346 RP+ + Q V L +E A L H+L YGPPG GKTT A+ IA ++ Sbjct: 24 RPQTLAQYIGQARVKHELGVYIEAARKREESLDHVLLYGPPGLGKTTLAMVIANEM 79
>RUVB_MYCPN (P75242) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 307 Score = 38.5 bits (88), Expect = 0.009 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%) Frame = +2 Query: 197 PRQVKDVAHQEEVVR-----VLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQL 346 P + ++E++ + + + A L H+L YGPPG GKTT A IA ++ Sbjct: 8 PNNFAEFVGKQEIINQIQLSIKASRINKAQLDHILLYGPPGVGKTTLARLIASEM 62
>RUVB_STRPM (Q48VY1) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 332 Score = 38.5 bits (88), Expect = 0.009 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQL 346 RP+ + + Q++V +E A L H+L +GPPG GKTT A IA +L Sbjct: 21 RPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPGLGKTTMAFVIANEL 76
>RUVB_STRP8 (Q8P302) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 332 Score = 38.5 bits (88), Expect = 0.009 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQL 346 RP+ + + Q++V +E A L H+L +GPPG GKTT A IA +L Sbjct: 21 RPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPGLGKTTMAFVIANEL 76
>RUVB_STRP6 (Q5XEE4) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 332 Score = 38.5 bits (88), Expect = 0.009 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQL 346 RP+ + + Q++V +E A L H+L +GPPG GKTT A IA +L Sbjct: 21 RPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPGLGKTTMAFVIANEL 76
>RUVB_STRP3 (Q8K8X8) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 332 Score = 38.5 bits (88), Expect = 0.009 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQL 346 RP+ + + Q++V +E A L H+L +GPPG GKTT A IA +L Sbjct: 21 RPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPGLGKTTMAFVIANEL 76
>RUVB_STRP1 (Q9A1Y1) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 332 Score = 38.5 bits (88), Expect = 0.009 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQL 346 RP+ + + Q++V +E A L H+L +GPPG GKTT A IA +L Sbjct: 21 RPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPGLGKTTMAFVIANEL 76
>RAD17_MOUSE (Q6NXW6) Cell cycle checkpoint protein RAD17| Length = 688 Score = 38.5 bits (88), Expect = 0.009 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 8/67 (11%) Frame = +2 Query: 170 SQPWVEKYRPRQVKDVA-HQEEVVRVLT----NTLETADLPH---MLFYGPPGTGKTTTA 325 ++PWV+KY+P ++A H++++ V T LE +L GPPG GKTTT Sbjct: 87 NEPWVDKYKPETQHELAVHKKKIEEVETWLKAQVLEVKPKQGGSVLLITGPPGCGKTTTI 146 Query: 326 LAIAYQL 346 ++ +L Sbjct: 147 KILSKEL 153
>PEX6_ASHGO (Q74Z13) Peroxisomal biogenesis factor 6 (Peroxin-6)| Length = 1021 Score = 38.5 bits (88), Expect = 0.009 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 7/54 (12%) Frame = +2 Query: 281 MLFYGPPGTGKTTTALAIA-------YQLYGPELYKARVLELNASDERXINVVR 421 +LFYGPPGTGKT A A+A + + GPEL + E A+ R R Sbjct: 759 ILFYGPPGTGKTLLAKAVATNFSLNFFSVKGPELLNMYIGESEANVRRVFQRAR 812
>DPA44_BPR69 (O64301) DNA polymerase accessory protein 44 (Protein Gp44) (Clamp| loader large subunit) Length = 320 Score = 38.5 bits (88), Expect = 0.009 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 4/90 (4%) Frame = +2 Query: 185 EKYRPRQVKDV---AHQEEVVRVLTNTLETADLPHMLFYGP-PGTGKTTTALAIAYQLYG 352 +KYRP + + A+ E + L + LPH++ + P PGTGKTT A A+ + Sbjct: 13 QKYRPSSIDECILPAYDHETFKSLVSK---GKLPHIILHSPSPGTGKTTVAKALCNDI-- 67 Query: 353 PELYKARVLELNASDERXINVVRTKIKDFA 442 A ++ +N SD + I+ VR + FA Sbjct: 68 ----NAEMMFVNGSDCK-IDFVRGPLTAFA 92
>RUVB_VIBPA (Q87QU7) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 334 Score = 38.5 bits (88), Expect = 0.009 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 12/71 (16%) Frame = +2 Query: 194 RPRQVKDVAHQEEV-----VRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQL---- 346 RP+++ D Q+ V + + L + L H+L +GPPG GKTT A +A ++ Sbjct: 26 RPKKLADYQGQDHVRDQMEIFIKAAQLRSEALDHLLIFGPPGLGKTTLANIVANEMEVNI 85 Query: 347 ---YGPELYKA 370 GP L KA Sbjct: 86 RTTSGPVLEKA 96
>RUVB_CHLTE (Q8KC00) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 344 Score = 38.5 bits (88), Expect = 0.009 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 5/61 (8%) Frame = +2 Query: 185 EKYRPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLY 349 E+ RP+++ D A Q++++ L + A L H+L GPPG GKTT A IA ++ Sbjct: 19 EQIRPQKMGDFAGQKKLIDNLKVFITAARKRGEALDHVLLSGPPGLGKTTLAHIIAAEMG 78 Query: 350 G 352 G Sbjct: 79 G 79
>RUVB_LACJO (P61533) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 339 Score = 38.5 bits (88), Expect = 0.009 Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 12/66 (18%) Frame = +2 Query: 272 LPHMLFYGPPGTGKTTTALAIAYQL-------YGPELYKARVL-----ELNASDERXINV 415 L H+L YGPPG GKTT A IA ++ GP + KA L ELN D I+ Sbjct: 58 LDHVLLYGPPGLGKTTLAFVIANEMGVHLKSTSGPAIEKAGDLVALLSELNPGDVLFIDE 117 Query: 416 VRTKIK 433 + K Sbjct: 118 IHRLAK 123
>RUVB_METHJ (Q2FPZ8) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 337 Score = 38.1 bits (87), Expect = 0.011 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQL 346 RP + D Q+ + LT + +A L H+LF GPPG GKTT A IA ++ Sbjct: 21 RPGLLADFIGQDSIKDALTVAITSARKRNKPLDHILFSGPPGLGKTTLAHIIAQEM 76
>RUVB_HELHP (Q7VIU8) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 336 Score = 38.1 bits (87), Expect = 0.011 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RP ++ QE++ + L +E + L H+LF+GPPG GKTT + IA+++ Sbjct: 15 RPNVWEEYIGQEKIKKNLKVFIEASKKRKECLDHILFFGPPGLGKTTLSHIIAHEM 70
>HELZ_HUMAN (P42694) Probable helicase with zinc-finger domain (EC 3.6.1.-)| Length = 1942 Score = 38.1 bits (87), Expect = 0.011 Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 3/73 (4%) Frame = +2 Query: 149 MAPLVP--PSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKT-T 319 M P +P P++ W E+ PR A Q+E V +T L LP +L GP GTGKT T Sbjct: 622 MTPTIPWSPNRQWDEQLDPRLN---AKQKEAVLAITTPL-AIQLPPVLIIGPYGTGKTFT 677 Query: 320 TALAIAYQLYGPE 358 A A+ + L E Sbjct: 678 LAQAVKHILQQQE 690
>RUVB_DESVH (P61531) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 320 Score = 38.1 bits (87), Expect = 0.011 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 5/59 (8%) Frame = +2 Query: 185 EKYRPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 E RPR + D Q+E+ + L+ A + H+LFYG PG GKTT A +A +L Sbjct: 9 ESVRPRLLDDFIGQDELRANMRVYLDAARERGQAMDHVLFYGNPGLGKTTLAQIMAGEL 67
>RFC1_YEAST (P38630) Activator 1 95 kDa subunit (Replication factor C subunit| 1) (Replication factor C1) (Cell division control protein 44) Length = 861 Score = 38.1 bits (87), Expect = 0.011 Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 17/103 (16%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQEEVVRVLTNTLETAD-----------------LPHMLFYGPPGT 307 W KY P ++ V + V L N L + + YGPPG Sbjct: 298 WTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGI 357 Query: 308 GKTTTALAIAYQLYGPELYKARVLELNASDERXINVVRTKIKD 436 GKTT A +A +L +LE NASD R ++ +K+ Sbjct: 358 GKTTAAHLVAQEL------GYDILEQNASDVRSKTLLNAGVKN 394
>RUVB_FUSNN (Q8RE97) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 332 Score = 38.1 bits (87), Expect = 0.011 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 13/87 (14%) Frame = +2 Query: 149 MAPLVPPSQPWVEK-YRPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTG 310 ++ L P++ ++K RP+ + QE + ++ +++ A + H+L YGPPG G Sbjct: 5 ISELEMPNEIEIQKSLRPKSFDEYIGQENLKEKMSISIKAAQKRNMVVDHILLYGPPGLG 64 Query: 311 KTTTALAIAYQL-------YGPELYKA 370 KTT A IA ++ GP L KA Sbjct: 65 KTTLAGVIANEMKANLKITSGPILEKA 91
>RUVB_VIBVY (Q7MJ78) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 334 Score = 38.1 bits (87), Expect = 0.011 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 12/71 (16%) Frame = +2 Query: 194 RPRQVKDVAHQEEV-----VRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQL---- 346 RP+++ D Q+ V + + L L H+L +GPPG GKTT A +A ++ Sbjct: 26 RPKKLADYQGQDHVRDQMEIFIKAAQLRNEALDHLLIFGPPGLGKTTLANIVANEMGVNI 85 Query: 347 ---YGPELYKA 370 GP L KA Sbjct: 86 RTTSGPVLEKA 96
>RUVB_ERWCT (Q6D4A2) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 334 Score = 38.1 bits (87), Expect = 0.011 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 12/85 (14%) Frame = +2 Query: 152 APLVPPSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKT 316 A VP + RP+ +K+ Q +V + ++ A L H+L +GPPG GKT Sbjct: 10 ADAVPEEEFLDRAMRPKLLKEYVGQPQVREQMEIFIQAARKRGDALDHLLIFGPPGLGKT 69 Query: 317 TTALAIAYQL-------YGPELYKA 370 T A +A ++ GP L KA Sbjct: 70 TLANIVANEMGVNMRTTSGPVLEKA 94
>RUVB_STRMU (Q8DWI4) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 344 Score = 38.1 bits (87), Expect = 0.011 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 12/71 (16%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL---- 346 RP+ +++ Q++V L ++ A L H+L +GPPG GKTT A IA +L Sbjct: 34 RPQYLQEYIGQDKVKDQLKIFIKAAKQRDEALDHVLLFGPPGLGKTTMAFVIANELGVNL 93 Query: 347 ---YGPELYKA 370 GP + KA Sbjct: 94 KQTSGPAIEKA 104
>RUVB1_CANAL (Q5A0W7) RuvB-like helicase 1 (EC 3.6.1.-)| Length = 458 Score = 38.1 bits (87), Expect = 0.011 Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 9/68 (13%) Frame = +2 Query: 281 MLFYGPPGTGKTTTALAIAYQL---------YGPELYKARVLELNASDERXINVVRTKIK 433 +L GPP TGKT ALAI+ +L G ELY A V + +A E + +IK Sbjct: 69 VLIAGPPATGKTALALAISQELGPKVPFCPIVGSELYSAEVKKTSALMENFRRAIGLRIK 128 Query: 434 DFAAVAVG 457 + V G Sbjct: 129 ETKEVYEG 136
>RUVB_PSEHT (Q3IIJ2) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 335 Score = 38.1 bits (87), Expect = 0.011 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 12/71 (16%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLY--- 349 RP+ + D Q V + + +E A L H+L +GPPG GKTT A +A +L Sbjct: 24 RPKLLADYRGQPHVKQQMEIFIEAARSRGEALDHLLIFGPPGLGKTTLANIVANELQVNI 83 Query: 350 ----GPELYKA 370 GP L KA Sbjct: 84 KATSGPVLEKA 94
>RUVB_ZYMMO (Q5NR72) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 347 Score = 38.1 bits (87), Expect = 0.011 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQL 346 RPR + + Q+ + +E A L H+LF+GPPG GKTT A IA ++ Sbjct: 21 RPRSLDEFIGQQAARENIRVFIEAAKKRQESLDHVLFFGPPGLGKTTLAQIIAREM 76
>RUVB_NITMU (Q2Y5G5) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 347 Score = 38.1 bits (87), Expect = 0.011 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 5/70 (7%) Frame = +2 Query: 152 APLVPPSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKT 316 APL + RP+ + + QE++ L +E A L H+L +GPPG GKT Sbjct: 11 APLSLKEEDLERALRPKHLAEYIGQEKIRGQLQIFIEAARRRREALDHVLLFGPPGLGKT 70 Query: 317 TTALAIAYQL 346 T A +A ++ Sbjct: 71 TLAHIVAKEM 80
>RAD17_CERAE (Q9XT62) Cell cycle checkpoint protein RAD17| Length = 670 Score = 38.1 bits (87), Expect = 0.011 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 8/59 (13%) Frame = +2 Query: 170 SQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPH--------MLFYGPPGTGKTTT 322 ++PWV+KY+P ++A ++ + + L+ L +L GPPG GKTTT Sbjct: 77 NEPWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTT 135
>RUVB_RALSO (Q8Y236) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 357 Score = 38.1 bits (87), Expect = 0.011 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 5/70 (7%) Frame = +2 Query: 152 APLVPPSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKT 316 +P P + + RP+ + + QE+V L + A L H+L +GPPG GKT Sbjct: 21 SPASPNEEAFERALRPKLLDEYVGQEKVRGQLDIFMTAAKKRREALDHVLLFGPPGLGKT 80 Query: 317 TTALAIAYQL 346 T A IA ++ Sbjct: 81 TLAHIIAREM 90
>RAD17_PONPY (Q5R652) Cell cycle checkpoint protein RAD17| Length = 681 Score = 38.1 bits (87), Expect = 0.011 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 8/59 (13%) Frame = +2 Query: 170 SQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPH--------MLFYGPPGTGKTTT 322 ++PWV+KY+P ++A ++ + + L+ L +L GPPG GKTTT Sbjct: 88 NEPWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTT 146
>RAD17_HUMAN (O75943) Cell cycle checkpoint protein RAD17 (hRad17)| (RF-C/activator 1 homolog) Length = 681 Score = 38.1 bits (87), Expect = 0.011 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 8/59 (13%) Frame = +2 Query: 170 SQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPH--------MLFYGPPGTGKTTT 322 ++PWV+KY+P ++A ++ + + L+ L +L GPPG GKTTT Sbjct: 88 NEPWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTT 146
>RUVB_AGRT5 (Q8U9K6) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 346 Score = 37.7 bits (86), Expect = 0.015 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RP+ + D Q E L +E A L H+LF GPPG GKTT A +A +L Sbjct: 22 RPQSLDDFTGQAEARANLKVFIEAAKNRGEALDHVLFVGPPGLGKTTLAQIMAKEL 77
>RUVB_CORDI (P61530) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 362 Score = 37.7 bits (86), Expect = 0.015 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETADL-----PHMLFYGPPGTGKTTTALAIAYQL 346 RPR + + Q +V L L A H+L GPPG GKTT A+ IAY+L Sbjct: 46 RPRSLDEFIGQPKVRDQLNLVLSGAKSRGVAPDHVLLSGPPGLGKTTMAMIIAYEL 101
>RUVB_MYCGE (Q49425) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 307 Score = 37.7 bits (86), Expect = 0.015 Identities = 17/35 (48%), Positives = 21/35 (60%) Frame = +2 Query: 242 VLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQL 346 + + L L H+L YGPPG GKTT A IA +L Sbjct: 28 IKASKLNKTQLDHILLYGPPGVGKTTLARLIANEL 62
>RFC1_HUMAN (P35251) Activator 1 140 kDa subunit (Replication factor C large| subunit) (A1 140 kDa subunit) (RF-C 140 kDa subunit) (Activator 1 large subunit) (DNA-binding protein PO-GA) Length = 1148 Score = 37.7 bits (86), Expect = 0.015 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 27/102 (26%) Frame = +2 Query: 179 WVEKYRPRQVKDVAHQE-------EVVRVLTNTLETA--DLPHM---------------- 283 WV+KY+P +K + Q+ +++R L N +++ D H Sbjct: 586 WVDKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQKSSSEDKKHAAKFGKFSGKDDGSSFK 645 Query: 284 --LFYGPPGTGKTTTALAIAYQLYGPELYKARVLELNASDER 403 L GPPG GKTTTA + +L +ELNASD R Sbjct: 646 AALLSGPPGVGKTTTASLVCQEL------GYSYVELNASDTR 681
>RUVB_PELLD (Q3B2F8) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 344 Score = 37.7 bits (86), Expect = 0.015 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 5/61 (8%) Frame = +2 Query: 185 EKYRPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLY 349 ++ RPR+++D Q+ + L + A L H+L GPPG GKTT A IA ++ Sbjct: 19 DQIRPRRMEDFTGQQRLTDNLKVFISAARMRGDALDHVLLSGPPGLGKTTLAHIIAEEMG 78 Query: 350 G 352 G Sbjct: 79 G 79
>PEX6_PICPA (P33289) Peroxisomal biogenesis factor 6 (Peroxin-6) (Peroxisome| biosynthesis protein PAS5) Length = 1165 Score = 37.7 bits (86), Expect = 0.015 Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 7/45 (15%) Frame = +2 Query: 281 MLFYGPPGTGKTTTALAIA-------YQLYGPELYKARVLELNAS 394 +LFYGPPGTGKT A AIA + + GPEL + E A+ Sbjct: 855 ILFYGPPGTGKTLLAKAIATNFALNFFSVKGPELLNMYIGESEAN 899
>RUVB_METCA (Q609L0) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 345 Score = 37.7 bits (86), Expect = 0.015 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 17/88 (19%) Frame = +2 Query: 158 LVPPSQPWVEK-----YRPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGT 307 LV + W E+ RP++++D Q + + ++ A L H+L +GPPG Sbjct: 6 LVSAAGQWDEEAIDRAIRPKRLEDYVGQRAMREQMAIFIQAALGRGEALDHVLIFGPPGL 65 Query: 308 GKTTTALAIAYQL-------YGPELYKA 370 GKTT A IA +L GP L KA Sbjct: 66 GKTTLANIIANELGVNVRHTSGPVLEKA 93
>RUVB_EHRCJ (Q3YRD9) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 329 Score = 37.7 bits (86), Expect = 0.015 Identities = 28/71 (39%), Positives = 34/71 (47%), Gaps = 12/71 (16%) Frame = +2 Query: 194 RPRQVKDVAHQEEVV---RVLTNTLETADLP--HMLFYGPPGTGKTTTALAIAYQL---- 346 RP + + Q VV ++ N T P H+L YGPPG GKTT A IA +L Sbjct: 20 RPNLLDEFIGQSSVVNNLKIFINAAYTRKEPMDHVLLYGPPGLGKTTLAHIIAKELKVNF 79 Query: 347 ---YGPELYKA 370 GP L KA Sbjct: 80 RSTAGPLLSKA 90
>RUVB_BDEBA (P61529) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 329 Score = 37.7 bits (86), Expect = 0.015 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 5/64 (7%) Frame = +2 Query: 161 VPPSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTA 325 V + W + RP++ +D Q++V L + A L H+L GPPG GKTT + Sbjct: 10 VEGEKSWENELRPQKFEDFPGQDDVKEKLKVFVAAAKHRGESLDHVLLCGPPGLGKTTLS 69 Query: 326 LAIA 337 IA Sbjct: 70 KIIA 73
>RUVB_BORA1 (Q2KVY2) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 357 Score = 37.7 bits (86), Expect = 0.015 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 5/70 (7%) Frame = +2 Query: 152 APLVPPSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKT 316 AP P + RP+ +++ Q+ L + A L H+L +GPPG GKT Sbjct: 21 APASPNEESIERALRPKALQEYVGQQRAREQLEIFIAAARKRSEALDHVLLFGPPGLGKT 80 Query: 317 TTALAIAYQL 346 T A IA+++ Sbjct: 81 TLAHIIAHEM 90
>RUVB_PELCD (Q3A230) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 341 Score = 37.4 bits (85), Expect = 0.019 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQL 346 RPR + + Q + L ++ A L H+LFYGPPG GKTT A +A ++ Sbjct: 22 RPRVLTEYIGQSKAKGNLQVFIDAARGRQESLDHVLFYGPPGLGKTTLANIVASEM 77
>RUVB_BORPE (Q7VTT6) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 357 Score = 37.4 bits (85), Expect = 0.019 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 6/68 (8%) Frame = +2 Query: 161 VPPSQPWVEK-YRPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTT 322 V P++ +E+ RP+ +++ Q+ L + A L H+L +GPPG GKTT Sbjct: 23 VSPNEESIERALRPKALEEYVGQQRAREQLEIFIAAARKRGEALDHVLLFGPPGLGKTTL 82 Query: 323 ALAIAYQL 346 A IA+++ Sbjct: 83 AHIIAHEM 90
>RUVB_BORPA (Q7W4T6) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 357 Score = 37.4 bits (85), Expect = 0.019 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 6/68 (8%) Frame = +2 Query: 161 VPPSQPWVEK-YRPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTT 322 V P++ +E+ RP+ +++ Q+ L + A L H+L +GPPG GKTT Sbjct: 23 VSPNEESIERALRPKALEEYVGQQRAREQLEIFIAAARKRGEALDHVLLFGPPGLGKTTL 82 Query: 323 ALAIAYQL 346 A IA+++ Sbjct: 83 AHIIAHEM 90
>RUVB_BORBR (Q7WGB3) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 357 Score = 37.4 bits (85), Expect = 0.019 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 6/68 (8%) Frame = +2 Query: 161 VPPSQPWVEK-YRPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTT 322 V P++ +E+ RP+ +++ Q+ L + A L H+L +GPPG GKTT Sbjct: 23 VSPNEESIERALRPKALEEYVGQQRAREQLEIFIAAARKRGEALDHVLLFGPPGLGKTTL 82 Query: 323 ALAIAYQL 346 A IA+++ Sbjct: 83 AHIIAHEM 90
>RUVB_NEIMB (Q9JZ86) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 343 Score = 37.4 bits (85), Expect = 0.019 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RP+ + D Q++ L ++ A L H+L +GPPG GKTT A IA +L Sbjct: 33 RPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAHIIAKEL 88
>RUVB_BACTN (Q8A2M0) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 343 Score = 37.4 bits (85), Expect = 0.019 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETADL-----PHMLFYGPPGTGKTTTALAIAYQL 346 RP +D + Q++VV L ++ A L H+L +GPPG GKTT + IA +L Sbjct: 25 RPLSFEDFSGQDKVVENLRIFVKAARLRGEALDHVLLHGPPGLGKTTLSNIIANEL 80
>Y2537_MYCLE (Q9CD28) Hypothetical protein ML2537| Length = 640 Score = 37.4 bits (85), Expect = 0.019 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Frame = +2 Query: 230 EVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPELY-KARVLELNASDERX 406 E+VR + H++F GPPGTGKTT A +A G L K + E++ +D Sbjct: 372 ELVRKQRGLMVAQRAHHLVFAGPPGTGKTTIARVVAKVYCGLGLLKKENIREVHRADLIG 431 Query: 407 INVVRTKIKDFAAV 448 ++ T+ K A + Sbjct: 432 QHIGETEAKTNAVI 445
>RUVB_VIBCH (Q9KR02) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 334 Score = 37.4 bits (85), Expect = 0.019 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 12/71 (16%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL---- 346 RP+++ D Q+ V + ++ A L H+L +GPPG GKTT A +A ++ Sbjct: 26 RPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANEMGVNI 85 Query: 347 ---YGPELYKA 370 GP L KA Sbjct: 86 RTTSGPVLEKA 96
>RUVB_THICR (Q31H83) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 340 Score = 37.4 bits (85), Expect = 0.019 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RP+ + D Q+ V L ++ A L H+L YGPPG GKTT + IA ++ Sbjct: 24 RPQIITDYIGQQAVREQLQLSINAAKMRQEHLDHVLLYGPPGLGKTTLSNIIAQEM 79
>RUVB_EHRRW (Q5HAK4) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 331 Score = 37.4 bits (85), Expect = 0.019 Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 12/71 (16%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQL---- 346 RP + + Q VV L ++ A + H+L YGPPG GKTT A IA +L Sbjct: 22 RPNLLDEFIGQSSVVSNLKIFIDAAYERKEPIDHILLYGPPGLGKTTLAHIIAKELKVNF 81 Query: 347 ---YGPELYKA 370 GP L KA Sbjct: 82 RSTAGPLLSKA 92
>RUVB_EHRRG (Q5FG39) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 331 Score = 37.4 bits (85), Expect = 0.019 Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 12/71 (16%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQL---- 346 RP + + Q VV L ++ A + H+L YGPPG GKTT A IA +L Sbjct: 22 RPNLLDEFIGQSSVVSNLKIFIDAAYERKEPIDHILLYGPPGLGKTTLAHIIAKELKVNF 81 Query: 347 ---YGPELYKA 370 GP L KA Sbjct: 82 RSTAGPLLSKA 92
>RUVB_CHLCH (Q3APQ7) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 352 Score = 37.4 bits (85), Expect = 0.019 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 5/59 (8%) Frame = +2 Query: 185 EKYRPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 E+ RP +++D A Q+ + L + A L H+L GPPG GKTT A IA ++ Sbjct: 19 EQIRPIRMEDFAGQQRLTDNLKVFISAAKMRGDALDHVLLSGPPGLGKTTLAYIIASEM 77
>RUVB_VIBF1 (Q5E699) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 337 Score = 37.4 bits (85), Expect = 0.019 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 12/71 (16%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL---- 346 RP+++ D Q+ V + ++ A L H+L +GPPG GKTT A +A ++ Sbjct: 26 RPKKLDDYQGQDHVRSQMEIFIKAAQMREEALDHLLIFGPPGLGKTTLANIVANEMGVNI 85 Query: 347 ---YGPELYKA 370 GP L KA Sbjct: 86 RTTSGPVLEKA 96
>RUVB_COLP3 (Q483C4) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 337 Score = 37.4 bits (85), Expect = 0.019 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 12/71 (16%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL---- 346 RP+ ++D Q+ V + + A L H+L +GPPG GKTT A +A ++ Sbjct: 24 RPKMLQDYTGQQHVKAQMEIFIPAAKNRGEPLDHLLIFGPPGLGKTTLANIVANEMGVNI 83 Query: 347 ---YGPELYKA 370 GP L KA Sbjct: 84 RTTSGPVLEKA 94
>RUVB_CAUCR (Q9A3G8) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 346 Score = 37.0 bits (84), Expect = 0.025 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RP+ + + QE+ L +E A L H+L +GPPG GKTT A +A +L Sbjct: 22 RPQTLAEFVGQEQAKGNLRVFIEAAKGRGEALDHVLLFGPPGLGKTTLAQIVAREL 77
>RUVB_DESDG (Q30YX7) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 321 Score = 37.0 bits (84), Expect = 0.025 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 5/59 (8%) Frame = +2 Query: 185 EKYRPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 + RPR + D QE++ L L+ A + H LFYG PG GKTT A +A ++ Sbjct: 10 DSIRPRTLDDFIGQEDLRANLRVYLQAARGRGQAMDHTLFYGNPGLGKTTLAQIMASEM 68
>RUVB_PHOPR (Q6LT48) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 337 Score = 37.0 bits (84), Expect = 0.025 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 12/71 (16%) Frame = +2 Query: 194 RPRQVKDVAHQEEV-----VRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQL---- 346 RP+ + D Q+ V + + L L H+L +GPPG GKTT A +A ++ Sbjct: 25 RPKLLNDYQGQDHVRGQMEIFIKAAQLREEALDHLLIFGPPGLGKTTLANIVANEMGVSI 84 Query: 347 ---YGPELYKA 370 GP L KA Sbjct: 85 RTTSGPVLEKA 95
>RUVB_BACHK (Q6HDA6) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 336 Score = 37.0 bits (84), Expect = 0.025 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RP+ ++ Q++ L +E A L H+L YGPPG GKTT A IA ++ Sbjct: 25 RPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPPGLGKTTLANIIANEM 80
>RUVB_BACCZ (Q634C4) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 336 Score = 37.0 bits (84), Expect = 0.025 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RP+ ++ Q++ L +E A L H+L YGPPG GKTT A IA ++ Sbjct: 25 RPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPPGLGKTTLANIIANEM 80
>RUVB_BACC1 (P61528) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 333 Score = 37.0 bits (84), Expect = 0.025 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RP+ ++ Q++ L +E A L H+L YGPPG GKTT A IA ++ Sbjct: 22 RPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPPGLGKTTLANIIANEM 77
>RUVB_BACAN (Q81LG9) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 333 Score = 37.0 bits (84), Expect = 0.025 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RP+ ++ Q++ L +E A L H+L YGPPG GKTT A IA ++ Sbjct: 22 RPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPPGLGKTTLANIIANEM 77
>RUVB_COREF (Q8FPK5) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 360 Score = 37.0 bits (84), Expect = 0.025 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQ----EEVVRVLTNTLETADLP-HMLFYGPPGTGKTTTALAIAYQL 346 RPR + + Q +++ VLT + +P H+L GPPG GKTT A+ IA +L Sbjct: 44 RPRSLDEFIGQPKVRDQLSLVLTGAKKRGVVPDHVLLSGPPGLGKTTMAMIIAQEL 99
>RUVB_SODGM (Q2NTI8) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 338 Score = 37.0 bits (84), Expect = 0.025 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 12/71 (16%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL---- 346 RP++++D Q V+ + ++ A L H+L GPPG GKTT A +A ++ Sbjct: 24 RPKKLEDYIGQPHVLEQMEIFIQAAKMRGDALDHLLISGPPGLGKTTLANIVANEMGVNL 83 Query: 347 ---YGPELYKA 370 GP L KA Sbjct: 84 RTTSGPVLEKA 94
>RUVB_RHILO (Q98F76) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 345 Score = 36.6 bits (83), Expect = 0.033 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RP+ + D Q V L +E A L H+LF GPPG GKTT A +A +L Sbjct: 22 RPQTLADFVGQAAVRANLKVFIEAAKGRNEALDHVLFVGPPGLGKTTLAQIMAREL 77
>RUVB_DEHE1 (Q3Z8V1) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 349 Score = 36.6 bits (83), Expect = 0.033 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RPR + D Q+ + L ++ A L H+L YGPPG GKTT + IA ++ Sbjct: 25 RPRCLSDFIGQKRLKDNLGVAIQAAKQRGEALDHVLLYGPPGLGKTTLSHIIALEM 80
>PRS2_METJA (Q58889) Putative 26S protease regulatory subunit homolog MJ1494| Length = 371 Score = 36.6 bits (83), Expect = 0.033 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 9/69 (13%) Frame = +2 Query: 158 LVPPSQPWVEKYRPRQVKDVAHQEEV---VRVLTNTLETADL------PHMLFYGPPGTG 310 L P + +++ + ++ QEE R++ LE L ++LFYGPPGTG Sbjct: 107 LQTPKKVLRTQFKKAKFSEIIGQEEAKKKCRIIMKYLENPKLFGEWAPKNVLFYGPPGTG 166 Query: 311 KTTTALAIA 337 KT A A+A Sbjct: 167 KTLMARALA 175
>RUVB_NEIMA (Q9JUB0) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 343 Score = 36.6 bits (83), Expect = 0.033 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RP+ + D Q + L ++ A L H+L +GPPG GKTT A IA +L Sbjct: 33 RPKTLDDYIGQHKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAHIIAKEL 88
>RUVB_NEIG1 (Q5F8L2) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 343 Score = 36.6 bits (83), Expect = 0.033 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 346 RP+ + D Q + L ++ A L H+L +GPPG GKTT A IA +L Sbjct: 33 RPKTLDDYIGQHKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAHIIAKEL 88
>RUVB_RHORT (Q2RVF5) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 350 Score = 36.6 bits (83), Expect = 0.033 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 12/71 (16%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL---- 346 RP+ + D Q + L ++ A + H+LF+GPPG GKTT A +A +L Sbjct: 26 RPQSLADFVGQRQTRENLGVFVQAARARGEAMDHVLFHGPPGLGKTTLAQIVARELGVGF 85 Query: 347 ---YGPELYKA 370 GP + KA Sbjct: 86 RGTSGPMIVKA 96
>RUVB_RHOS4 (Q3J0F8) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 341 Score = 36.6 bits (83), Expect = 0.033 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETADL-----PHMLFYGPPGTGKTTTALAIAYQL 346 RP+ +++ Q E L +E+A + H LF+GPPG GKTT A +A +L Sbjct: 22 RPQSLEEFVGQAEARANLRVFIESARMRGEAMDHTLFHGPPGLGKTTLAQIMAREL 77
>RUVB_DECAR (Q478E5) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 358 Score = 36.6 bits (83), Expect = 0.033 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQL 346 RP+++ D Q ++ L ++ A L H+L +GPPG GKTT A +A ++ Sbjct: 37 RPKRLADYTGQVKIREQLEIFIQAARNRSESLDHVLLFGPPGLGKTTLAHIVAAEM 92
>RUVB_HAHCH (Q2SCL3) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 334 Score = 36.6 bits (83), Expect = 0.033 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 12/71 (16%) Frame = +2 Query: 194 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL---- 346 RP++++D Q +V + + A L H L +GPPG GKTT A IA ++ Sbjct: 24 RPKRLEDYVGQPQVREQMEIFINAARGRQEALDHTLIFGPPGLGKTTLANIIANEMDVSI 83 Query: 347 ---YGPELYKA 370 GP L KA Sbjct: 84 KTTSGPVLEKA 94
>RUVB_BACSU (O32055) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 334 Score = 36.6 bits (83), Expect = 0.033 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 5/64 (7%) Frame = +2 Query: 185 EKYRPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLY 349 + RP+ + Q +V L ++ A L H+L YGPPG GKTT A +A ++ Sbjct: 19 QSLRPQNLAQYIGQHKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEM- 77 Query: 350 GPEL 361 G EL Sbjct: 78 GVEL 81
>RUVB1_RAT (P60123) RuvB-like 1 (EC 3.6.1.-) (49-kDa TATA box-binding| protein-interacting protein) (49 kDa TBP-interacting protein) (TIP49a) (Pontin 52) (DNA helicase p50) Length = 456 Score = 36.6 bits (83), Expect = 0.033 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 9/68 (13%) Frame = +2 Query: 281 MLFYGPPGTGKTTTALAIAYQL---------YGPELYKARVLELNASDERXINVVRTKIK 433 +L GPPGTGKT ALAIA +L G E+Y + + E + +IK Sbjct: 66 VLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIK 125 Query: 434 DFAAVAVG 457 + V G Sbjct: 126 ETKEVYEG 133
>RUVB1_MOUSE (P60122) RuvB-like 1 (EC 3.6.1.-) (49-kDa TATA box-binding| protein-interacting protein) (49 kDa TBP-interacting protein) (TIP49a) (Pontin 52) (DNA helicase p50) Length = 456 Score = 36.6 bits (83), Expect = 0.033 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 9/68 (13%) Frame = +2 Query: 281 MLFYGPPGTGKTTTALAIAYQL---------YGPELYKARVLELNASDERXINVVRTKIK 433 +L GPPGTGKT ALAIA +L G E+Y + + E + +IK Sbjct: 66 VLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIK 125 Query: 434 DFAAVAVG 457 + V G Sbjct: 126 ETKEVYEG 133
>RUVB1_HUMAN (Q9Y265) RuvB-like 1 (EC 3.6.1.-) (49-kDa TATA box-binding| protein-interacting protein) (49 kDa TBP-interacting protein) (TIP49a) (Pontin 52) (Nuclear matrix protein 238) (NMP 238) (54 kDa erythrocyte cytosolic protein) (ECP-54) (TIP60-associ Length = 456 Score = 36.6 bits (83), Expect = 0.033 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 9/68 (13%) Frame = +2 Query: 281 MLFYGPPGTGKTTTALAIAYQL---------YGPELYKARVLELNASDERXINVVRTKIK 433 +L GPPGTGKT ALAIA +L G E+Y + + E + +IK Sbjct: 66 VLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIK 125 Query: 434 DFAAVAVG 457 + V G Sbjct: 126 ETKEVYEG 133 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,983,001 Number of Sequences: 219361 Number of extensions: 736548 Number of successful extensions: 6268 Number of sequences better than 10.0: 500 Number of HSP's better than 10.0 without gapping: 5823 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6187 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
