ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast56b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FTSK_BRAJA (Q89WR2) DNA translocase ftsK 30 1.9
2GCFC_HUMAN (Q9Y5B6) GC-rich sequence DNA-binding factor homolog 28 5.5

>FTSK_BRAJA (Q89WR2) DNA translocase ftsK|
          Length = 825

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 71  PAVLYPPPASVFVTAMSVVSFASLASAGL 157
           PAV++ PP  ++ T + V+ FA++A+  L
Sbjct: 156 PAVIFGPPGMIYRTVLGVILFAAMAATFL 184



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>GCFC_HUMAN (Q9Y5B6) GC-rich sequence DNA-binding factor homolog|
          Length = 917

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 8  RADPEANDRERD*EMWPPSLLP 73
          R D E  +RERD E  PP LLP
Sbjct: 13 RNDSEEEERERDEEQEPPPLLP 34


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,877,904
Number of Sequences: 219361
Number of extensions: 288119
Number of successful extensions: 1234
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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