Clone Information

BLAST Search Result

Clone Name	bast56a11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|BT009559.1\| Triticum aestivum clone wre1n.pk0001.g4:fis, full...	412	e-112
2	ref\|XM_473040.1\| Oryza sativa (japonica cultivar-group), predic...	204	2e-49
3	dbj\|AK103493.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	204	2e-49
4	dbj\|AK070530.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	204	2e-49
5	gb\|AY104006.1\| Zea mays PCO112396 mRNA sequence	135	1e-28
6	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	84	5e-13
7	emb\|AL606627.3\|OSJN00052 Oryza sativa genomic DNA, chromosome 4,...	84	5e-13
8	emb\|AL137073.13\| Human DNA sequence from clone RP11-404F11 on ch...	46	0.099
9	ref\|NM_129967.2\| Arabidopsis thaliana COS1 (COI1 SUPPRESSOR1); 6...	42	1.5
10	ref\|XM_479231.1\| Oryza sativa (japonica cultivar-group), mRNA	42	1.5
11	ref\|XM_368560.1\| Magnaporthe grisea 70-15 chromosome VI hypothet...	42	1.5
12	ref\|XM_416103.1\| PREDICTED: Gallus gallus similar to Glioma path...	42	1.5
13	gb\|AY091343.1\| Arabidopsis thaliana putative 6,7-dimethyl-8-ribi...	42	1.5
14	gb\|AY050913.1\| Arabidopsis thaliana putative 6,7-dimethyl-8-ribi...	42	1.5
15	emb\|AL731642.3\|OSJN00289 Oryza sativa genomic DNA, chromosome 4,...	42	1.5
16	gb\|AC004005.3\| Arabidopsis thaliana chromosome 2 clone F6E13 map...	42	1.5
17	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.5
18	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.5
19	gb\|BT004261.1\| Arabidopsis thaliana clone RAFL15-26-B05 (R20793)	42	1.5
20	dbj\|AP004260.2\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.5
21	dbj\|AP003620.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.5
22	dbj\|AK122106.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.5
23	dbj\|AK064833.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.5
24	gb\|AF148649.1\|AF148649 Arabidopsis thaliana 6,7-dimethyl-8-ribit...	42	1.5
25	gb\|AF429659.1\| Lactobacillus rhamnosus strain ATCC 7469 60 kDa h...	40	6.1
26	gb\|AF429652.1\| Lactobacillus rhamnosus strain ATCC 21052 60 kDa ...	40	6.1
27	gb\|AF429651.1\| Lactobacillus rhamnosus strain ATCC 8530 60 kDa h...	40	6.1
28	gb\|AF429650.1\| Lactobacillus rhamnosus strain ATCC 7469a 60 kDa ...	40	6.1
29	ref\|NM_183939.1\| Oryza sativa (japonica cultivar-group), predic...	40	6.1
30	gb\|AY424337.1\| Lactobacillus rhamnosus strain DSM 20021 GroEL (h...	40	6.1
31	ref\|XM_425602.1\| PREDICTED: Gallus gallus similar to POU domain,...	40	6.1
32	gb\|AE017180.1\| Geobacter sulfurreducens PCA, complete genome	40	6.1
33	ref\|XM_617989.2\| PREDICTED: Bos taurus similar to glutamate rece...	40	6.1
34	ref\|XM_877232.1\| PREDICTED: Bos taurus similar to glutamate rece...	40	6.1
35	ref\|XM_877185.1\| PREDICTED: Bos taurus similar to glutamate rece...	40	6.1
36	gb\|AC163747.4\| Mus musculus BAC clone RP23-403P6 from chromosome...	40	6.1
37	emb\|CR378662.1\| M.truncatula DNA sequence from clone MTH2-41N19 ...	40	6.1
38	ref\|XM_850365.1\| PREDICTED: Canis familiaris similar to MAX dime...	40	6.1
39	ref\|XM_531629.2\| PREDICTED: Canis familiaris similar to Prolifer...	40	6.1
40	gb\|BC090060.1\| Homo sapiens cDNA clone IMAGE:6568950, **** WARNI...	40	6.1
41	gb\|CP000076.1\| Pseudomonas fluorescens Pf-5, complete genome	40	6.1
42	gb\|DQ397579.1\| Cenarchaeum symbiosum clone C15E09, complete sequ...	40	6.1
43	gb\|DQ397561.1\| Cenarchaeum symbiosum clone C01D10, complete sequ...	40	6.1
44	dbj\|AK077367.1\| Mus musculus adult male pituitary gland cDNA, RI...	40	6.1
45	gb\|AC005546.1\|AC005546 Homo sapiens chromosome 19, cosmid R29425...	40	6.1
46	gb\|AC011446.6\|AC011446 Homo sapiens chromosome 19 clone CTC-250I...	40	6.1
47	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.1
48	dbj\|AP003337.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.1
49	gb\|AC084125.9\| Homo sapiens chromosome 8, clone CTD-2517M22, com...	40	6.1
50	dbj\|BA000035.2\| Corynebacterium efficiens YS-314 DNA, complete g...	40	6.1
51	dbj\|AK121837.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	6.1
52	dbj\|AK068939.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	6.1
53	gb\|AF429685.1\| Lactobacillus homohiochii strain ATCC 15434 60 kD...	40	6.1

>gb|BT009559.1| Triticum aestivum clone wre1n.pk0001.g4:fis, full insert mRNA
           sequence
          Length = 849

 Score =  412 bits (208), Expect = e-112
 Identities = 240/251 (95%)
 Strand = Plus / Plus

                                                                       
Query: 203 ggtcgcggatgctcgggcctctcggctccccgtcgtggccgcagccgccgcagggcacca 262
           |||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct: 7   ggtcgcggatgctcgggcttcccggctccccgtcgtggccgcagccgccgcggggcacca 66

                                                                       
Query: 263 gcggctgatggggtcgctgaccaacaacgaggggctcaggttcggcgtggttgtggcacg 322
           |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 67  gcggctgatggggtcgctgaccaacaccgaggggctcaggttcgccgtggttgtggcacg 126

                                                                       
Query: 323 gttcaatgagatagtgaccaacttgcttctgcagggggctctagaggcattcgagcgata 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 gttcaatgagatagtgaccaacttgcttctgcagggggctctagaggcattcgagcgata 186

                                                                       
Query: 383 ctcggtcaaagcagaanatatcaccgttgttagtgttcctggcagctttgaaattcctgt 442
           |||  ||||||||||| || |||| || ||||||||||||||||||||||||||||||||
Sbjct: 187 ctctatcaaagcagaaaatgtcactgtagttagtgttcctggcagctttgaaattcctgt 246

                      
Query: 443 tgcagcacaga 453
           |||||||||||
Sbjct: 247 tgcagcacaga 257

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>ref|XM_473040.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 666

 Score =  204 bits (103), Expect = 2e-49
 Identities = 192/222 (86%)
 Strand = Plus / Plus

                                                                       
Query: 230 ccccgtcgtggccgcagccgccgcagggcaccagcggctgatggggtcgctgaccaacaa 289
           ||||||||||| ||| |||| ||  |||||||||||||| ||||||||| |||| |||| 
Sbjct: 168 ccccgtcgtggtcgccgccggcggcgggcaccagcggcttatggggtcgttgactaacac 227

                                                                       
Query: 290 cgaggggctcaggttcggcgtggttgtggcacggttcaatgagatagtgaccaacttgct 349
           | ||||||||||||| || |||||||||||||||||||||||||| || |||||||||||
Sbjct: 228 ccaggggctcaggtttggagtggttgtggcacggttcaatgagattgtcaccaacttgct 287

                                                                       
Query: 350 tctgcagggggctctagaggcattcgagcgatactcggtcaaagcagaanatatcaccgt 409
            |||||||| ||||| ||| |||| ||| |||| || ||||||  |||| |||| || ||
Sbjct: 288 actgcagggagctcttgagacatttgagagatattccgtcaaaaaagaaaatataacagt 347

                                                     
Query: 410 tgttagtgttcctggcagctttgaaattcctgttgcagcaca 451
           ||| |||||||||||||| ||||||||||||||||| |||||
Sbjct: 348 tgtaagtgttcctggcagttttgaaattcctgttgcggcaca 389

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>dbj|AK103493.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033130O17, full
           insert sequence
          Length = 1036

 Score =  204 bits (103), Expect = 2e-49
 Identities = 192/222 (86%)
 Strand = Plus / Plus

                                                                       
Query: 230 ccccgtcgtggccgcagccgccgcagggcaccagcggctgatggggtcgctgaccaacaa 289
           ||||||||||| ||| |||| ||  |||||||||||||| ||||||||| |||| |||| 
Sbjct: 281 ccccgtcgtggtcgccgccggcggcgggcaccagcggcttatggggtcgttgactaacac 340

                                                                       
Query: 290 cgaggggctcaggttcggcgtggttgtggcacggttcaatgagatagtgaccaacttgct 349
           | ||||||||||||| || |||||||||||||||||||||||||| || |||||||||||
Sbjct: 341 ccaggggctcaggtttggagtggttgtggcacggttcaatgagattgtcaccaacttgct 400

                                                                       
Query: 350 tctgcagggggctctagaggcattcgagcgatactcggtcaaagcagaanatatcaccgt 409
            |||||||| ||||| ||| |||| ||| |||| || ||||||  |||| |||| || ||
Sbjct: 401 actgcagggagctcttgagacatttgagagatattccgtcaaaaaagaaaatataacagt 460

                                                     
Query: 410 tgttagtgttcctggcagctttgaaattcctgttgcagcaca 451
           ||| |||||||||||||| ||||||||||||||||| |||||
Sbjct: 461 tgtaagtgttcctggcagttttgaaattcctgttgcggcaca 502

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>dbj|AK070530.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061H21, full
           insert sequence
          Length = 1046

 Score =  204 bits (103), Expect = 2e-49
 Identities = 192/222 (86%)
 Strand = Plus / Plus

                                                                       
Query: 230 ccccgtcgtggccgcagccgccgcagggcaccagcggctgatggggtcgctgaccaacaa 289
           ||||||||||| ||| |||| ||  |||||||||||||| ||||||||| |||| |||| 
Sbjct: 241 ccccgtcgtggtcgccgccggcggcgggcaccagcggcttatggggtcgttgactaacac 300

                                                                       
Query: 290 cgaggggctcaggttcggcgtggttgtggcacggttcaatgagatagtgaccaacttgct 349
           | ||||||||||||| || |||||||||||||||||||||||||| || |||||||||||
Sbjct: 301 ccaggggctcaggtttggagtggttgtggcacggttcaatgagattgtcaccaacttgct 360

                                                                       
Query: 350 tctgcagggggctctagaggcattcgagcgatactcggtcaaagcagaanatatcaccgt 409
            |||||||| ||||| ||| |||| ||| |||| || ||||||  |||| |||| || ||
Sbjct: 361 actgcagggagctcttgagacatttgagagatattccgtcaaaaaagaaaatataacagt 420

                                                     
Query: 410 tgttagtgttcctggcagctttgaaattcctgttgcagcaca 451
           ||| |||||||||||||| ||||||||||||||||| |||||
Sbjct: 421 tgtaagtgttcctggcagttttgaaattcctgttgcggcaca 462

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>gb|AY104006.1| Zea mays PCO112396 mRNA sequence
          Length = 936

 Score =  135 bits (68), Expect = 1e-28
 Identities = 163/195 (83%)
 Strand = Plus / Plus

                                                                       
Query: 246 gccgccgcagggcaccagcggctgatggggtcgctgaccaacaacgaggggctcaggttc 305
           |||||||| |||||||||  | ||||||||||  ||| |||||||||||| |||| ||| 
Sbjct: 176 gccgccgcggggcaccagaagttgatggggtctttgaacaacaacgagggactcatgttt 235

                                                                       
Query: 306 ggcgtggttgtggcacggttcaatgagatagtgaccaacttgcttctgcagggggctcta 365
           || |||||||||||||||||||| ||| | ||||| || ||| | || ||||| || || 
Sbjct: 236 ggggtggttgtggcacggttcaacgaggtcgtgacaaatttgttactacagggtgccctg 295

                                                                       
Query: 366 gaggcattcgagcgatactcggtcaaagcagaanatatcaccgttgttagtgttcctggc 425
           ||  | |||||||||||||| || ||||||||| |||| || ||||||||||||||||| 
Sbjct: 296 gaaactttcgagcgatactctgttaaagcagaaaatataacagttgttagtgttcctgga 355

                          
Query: 426 agctttgaaattcct 440
           ||||||||| |||||
Sbjct: 356 agctttgaagttcct 370

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                            
Query: 311      ggttgtggcacggttcaatgagatagtgaccaacttgcttctgcagggggctctagaggc 370
                |||||||||||||||||||||||| || ||||||||||| |||||||| ||||| ||| |
Sbjct: 24856106 ggttgtggcacggttcaatgagattgtcaccaacttgctactgcagggagctcttgagac 24856047

                                      
Query: 371      attcgagcgatactcggtcaaa 392
                ||| ||| |||| || ||||||
Sbjct: 24856046 atttgagagatattccgtcaaa 24856025



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                            
Query: 230      ccccgtcgtggccgcagccgccgcagggcaccagcggctgatggggtcgctgaccaacaa 289
                ||||||||||| ||| |||| ||  |||||||||||||| ||||||||| |||| |||| 
Sbjct: 24856582 ccccgtcgtggtcgccgccggcggcgggcaccagcggcttatggggtcgttgactaacac 24856523

                                        
Query: 290      cgaggggctcaggttcggcgtggt 313
                | ||||||||||||| || |||||
Sbjct: 24856522 ccaggggctcaggtttggagtggt 24856499



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                            
Query: 408      gttgttagtgttcctggcagctttgaaattcctgttgcagcaca 451
                ||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct: 24855279 gttgtaagtgttcctggcagttttgaaattcctgttgcggcaca 24855236



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 136      ctctgcgtgcgcccagagccgccgccgcc 164
                |||||| |||||||||||||||| |||||
Sbjct: 19809015 ctctgcatgcgcccagagccgccaccgcc 19809043

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>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08,
              complete sequence
          Length = 170765

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                          
Query: 311    ggttgtggcacggttcaatgagatagtgaccaacttgcttctgcagggggctctagaggc 370
              |||||||||||||||||||||||| || ||||||||||| |||||||| ||||| ||| |
Sbjct: 117822 ggttgtggcacggttcaatgagattgtcaccaacttgctactgcagggagctcttgagac 117763

                                    
Query: 371    attcgagcgatactcggtcaaa 392
              ||| ||| |||| || ||||||
Sbjct: 117762 atttgagagatattccgtcaaa 117741



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                          
Query: 230    ccccgtcgtggccgcagccgccgcagggcaccagcggctgatggggtcgctgaccaacaa 289
              ||||||||||| ||| |||| ||  |||||||||||||| ||||||||| |||| |||| 
Sbjct: 118298 ccccgtcgtggtcgccgccggcggcgggcaccagcggcttatggggtcgttgactaacac 118239

                                      
Query: 290    cgaggggctcaggttcggcgtggt 313
              | ||||||||||||| || |||||
Sbjct: 118238 ccaggggctcaggtttggagtggt 118215



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                          
Query: 408    gttgttagtgttcctggcagctttgaaattcctgttgcagcaca 451
              ||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct: 116995 gttgtaagtgttcctggcagttttgaaattcctgttgcggcaca 116952

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>emb|AL137073.13| Human DNA sequence from clone RP11-404F11 on chromosome 9p23-24.1
              Contains a novel gene encoding a protein similar to
              bacterial N-acetylneuraminic acid condensing enzyme (NEUB)
              and 3' end of the TBCID2 gene, a TRIM14 gene encoding
              tripartite motif-containing 14 (KIAA0129), the CORO2A gene
              encoding Coronin 2A (actin-binding protein), TBC1D2 gene
              encoding TBC1 domain family, member 2 (PARIS1,
              PARIS-1,DKFZP761D1823, DKFZp761D1823), and 4 CpG islands,
              complete sequence
          Length = 201300

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 144    gcgcccagagccgccgccgcctc 166
              |||||||||||||||||||||||
Sbjct: 171813 gcgcccagagccgccgccgcctc 171835

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>ref|NM_129967.2| Arabidopsis thaliana COS1 (COI1 SUPPRESSOR1);
           6,7-dimethyl-8-ribityllumazine synthase/ riboflavin
           synthase AT2G44050 (COS1) mRNA, complete cds
          Length = 965

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 417 gttcctggcagctttgaaatt 437
           |||||||||||||||||||||
Sbjct: 411 gttcctggcagctttgaaatt 431

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>ref|XM_479231.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2021

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 154 ccgccgccgcctcgttcccgtcgcccaac 182
           ||||||||||||||| |||| ||||||||
Sbjct: 228 ccgccgccgcctcgtccccgccgcccaac 200

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>ref|XM_368560.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
           (MG00684.4) partial mRNA
          Length = 1374

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 409 ttgttagtgttcctggcagct 429
           |||||||||||||||||||||
Sbjct: 719 ttgttagtgttcctggcagct 699

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>ref|XM_416103.1| PREDICTED: Gallus gallus similar to Glioma pathogenesis-related
           protein (GliPR) (RTVP-1 protein) (LOC417861), mRNA
          Length = 1231

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 144 gcgcccagagccgccgccgcc 164
           |||||||||||||||||||||
Sbjct: 73  gcgcccagagccgccgccgcc 53

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>gb|AY091343.1| Arabidopsis thaliana putative 6,7-dimethyl-8-ribityllumazine
           synthase precursor (At2g44050) mRNA, complete cds
          Length = 715

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 417 gttcctggcagctttgaaatt 437
           |||||||||||||||||||||
Sbjct: 373 gttcctggcagctttgaaatt 393

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>gb|AY050913.1| Arabidopsis thaliana putative 6,7-dimethyl-8-ribityllumazine
           synthase precursor (At2g44050) mRNA, complete cds
          Length = 966

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 417 gttcctggcagctttgaaatt 437
           |||||||||||||||||||||
Sbjct: 413 gttcctggcagctttgaaatt 433

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>emb|AL731642.3|OSJN00289 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0014D23,
             complete sequence
          Length = 133759

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 136   ctctgcgtgcgcccagagccgccgccgcc 164
             |||||| |||||||||||||||| |||||
Sbjct: 97477 ctctgcatgcgcccagagccgccaccgcc 97505

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>gb|AC004005.3| Arabidopsis thaliana chromosome 2 clone F6E13 map CIC10F02, CIC02E07,
             complete sequence
          Length = 109741

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 417   gttcctggcagctttgaaatt 437
             |||||||||||||||||||||
Sbjct: 55242 gttcctggcagctttgaaatt 55262

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 154      ccgccgccgcctcgttcccgtcgcccaac 182
                ||||||||||||||| |||| ||||||||
Sbjct: 26105141 ccgccgccgcctcgtccccgccgcccaac 26105113

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 233      cgtcgtggccgcagccgccgc 253
                |||||||||||||||||||||
Sbjct: 17300528 cgtcgtggccgcagccgccgc 17300508

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>gb|BT004261.1| Arabidopsis thaliana clone RAFL15-26-B05 (R20793)
          Length = 1499

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 417 gttcctggcagctttgaaatt 437
           |||||||||||||||||||||
Sbjct: 422 gttcctggcagctttgaaatt 442

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>dbj|AP004260.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0011H09
          Length = 147992

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 154    ccgccgccgcctcgttcccgtcgcccaac 182
              ||||||||||||||| |||| ||||||||
Sbjct: 138703 ccgccgccgcctcgtccccgccgcccaac 138675

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>dbj|AP003620.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0596H06
          Length = 142832

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 233   cgtcgtggccgcagccgccgc 253
             |||||||||||||||||||||
Sbjct: 37121 cgtcgtggccgcagccgccgc 37101

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>dbj|AK122106.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033126E08, full
           insert sequence
          Length = 2105

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 154 ccgccgccgcctcgttcccgtcgcccaac 182
           ||||||||||||||| |||| ||||||||
Sbjct: 298 ccgccgccgcctcgtccccgccgcccaac 270

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>dbj|AK064833.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F18, full
           insert sequence
          Length = 2021

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 154 ccgccgccgcctcgttcccgtcgcccaac 182
           ||||||||||||||| |||| ||||||||
Sbjct: 228 ccgccgccgcctcgtccccgccgcccaac 200

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>gb|AF148649.1|AF148649 Arabidopsis thaliana 6,7-dimethyl-8-ribityllumazine synthase
           precursor, mRNA, complete cds; nuclear gene for
           chloroplast product
          Length = 684

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 417 gttcctggcagctttgaaatt 437
           |||||||||||||||||||||
Sbjct: 373 gttcctggcagctttgaaatt 393

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>gb|AF429659.1| Lactobacillus rhamnosus strain ATCC 7469 60 kDa heat shock protein
           (HSP60) gene, partial cds
          Length = 552

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 72  gcttcaccggcaacatcgtc 91
           ||||||||||||||||||||
Sbjct: 497 gcttcaccggcaacatcgtc 478

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>gb|AF429652.1| Lactobacillus rhamnosus strain ATCC 21052 60 kDa heat shock protein
           (HSP60) gene, partial cds
          Length = 552

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 72  gcttcaccggcaacatcgtc 91
           ||||||||||||||||||||
Sbjct: 497 gcttcaccggcaacatcgtc 478

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>gb|AF429651.1| Lactobacillus rhamnosus strain ATCC 8530 60 kDa heat shock protein
           (HSP60) gene, partial cds
          Length = 552

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 72  gcttcaccggcaacatcgtc 91
           ||||||||||||||||||||
Sbjct: 497 gcttcaccggcaacatcgtc 478

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>gb|AF429650.1| Lactobacillus rhamnosus strain ATCC 7469a 60 kDa heat shock protein
           (HSP60) gene, partial cds
          Length = 552

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 72  gcttcaccggcaacatcgtc 91
           ||||||||||||||||||||
Sbjct: 497 gcttcaccggcaacatcgtc 478

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>ref|NM_183939.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1509

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 230  ccccgtcgtggccgcagccg 249
            ||||||||||||||||||||
Sbjct: 1086 ccccgtcgtggccgcagccg 1105

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>gb|AY424337.1| Lactobacillus rhamnosus strain DSM 20021 GroEL (hsp60) gene,
           partial cds
          Length = 506

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 72  gcttcaccggcaacatcgtc 91
           ||||||||||||||||||||
Sbjct: 467 gcttcaccggcaacatcgtc 448

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>ref|XM_425602.1| PREDICTED: Gallus gallus similar to POU domain, class 4,
           transcription factor 1 (Brain-specific homeobox/POU
           domain protein 3A) (Brn-3A) (Brn-3.0) (LOC428032), mRNA
          Length = 1743

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 230 ccccgtcgtggccgcagccgccgc 253
           ||||||||||||||| ||||||||
Sbjct: 712 ccccgtcgtggccgccgccgccgc 689

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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 144    gcgcccagagccgccgccgc 163
              ||||||||||||||||||||
Sbjct: 479211 gcgcccagagccgccgccgc 479192

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>ref|XM_617989.2| PREDICTED: Bos taurus similar to glutamate receptor, ionotropic,
            NMDA2B, transcript variant 1 (LOC537804), mRNA
          Length = 4576

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 271  tggggtcgctgaccaacaacgagg 294
            ||||||||||||||| ||||||||
Sbjct: 1611 tggggtcgctgaccatcaacgagg 1634

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>ref|XM_877232.1| PREDICTED: Bos taurus similar to glutamate receptor, ionotropic,
            NMDA2B, transcript variant 3 (LOC537804), mRNA
          Length = 4594

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 271  tggggtcgctgaccaacaacgagg 294
            ||||||||||||||| ||||||||
Sbjct: 1629 tggggtcgctgaccatcaacgagg 1652

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>ref|XM_877185.1| PREDICTED: Bos taurus similar to glutamate receptor, ionotropic,
            NMDA2B, transcript variant 2 (LOC537804), mRNA
          Length = 4579

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 271  tggggtcgctgaccaacaacgagg 294
            ||||||||||||||| ||||||||
Sbjct: 1614 tggggtcgctgaccatcaacgagg 1637

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>gb|AC163747.4| Mus musculus BAC clone RP23-403P6 from chromosome 6, complete sequence
          Length = 185160

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 146    gcccagagccgccgccgcct 165
              ||||||||||||||||||||
Sbjct: 128615 gcccagagccgccgccgcct 128634

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>emb|CR378662.1| M.truncatula DNA sequence from clone MTH2-41N19 on chromosome 3,
             complete sequence
          Length = 119227

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 416   tgttcctggcagctttgaaa 435
             ||||||||||||||||||||
Sbjct: 85912 tgttcctggcagctttgaaa 85931

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>ref|XM_850365.1| PREDICTED: Canis familiaris similar to MAX dimerization protein 1
           (LOC612631), mRNA
          Length = 1134

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 95  gcccgcgggggcctcctcct 114
           ||||||||||||||||||||
Sbjct: 852 gcccgcgggggcctcctcct 833

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>ref|XM_531629.2| PREDICTED: Canis familiaris similar to Proliferation-associated
           protein 2G4 (Cell cycle protein p38-2G4 homolog) (hG4-1)
           (LOC474396), mRNA
          Length = 1805

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 153 gccgccgccgcctcgttccc 172
           ||||||||||||||||||||
Sbjct: 154 gccgccgccgcctcgttccc 135

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>gb|BC090060.1| Homo sapiens cDNA clone IMAGE:6568950, **** WARNING: chimeric clone
            ****
          Length = 5243

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 145  cgcccagagccgccgccgcc 164
            ||||||||||||||||||||
Sbjct: 3698 cgcccagagccgccgccgcc 3679

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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     cagatcttcctcgacaccca 48
              ||||||||||||||||||||
Sbjct: 385182 cagatcttcctcgacaccca 385163

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>gb|DQ397579.1| Cenarchaeum symbiosum clone C15E09, complete sequence
          Length = 43895

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    cgtccgcgcccgcgggggcc 107
             ||||||||||||||||||||
Sbjct: 27671 cgtccgcgcccgcgggggcc 27652

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>gb|DQ397561.1| Cenarchaeum symbiosum clone C01D10, complete sequence
          Length = 39454

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    cgtccgcgcccgcgggggcc 107
             ||||||||||||||||||||
Sbjct: 12454 cgtccgcgcccgcgggggcc 12473

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>dbj|AK077367.1| Mus musculus adult male pituitary gland cDNA, RIKEN full-length
            enriched library, clone:5330440O09 product:cyclin D2,
            full insert sequence
          Length = 3506

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 146  gcccagagccgccgccgcct 165
            ||||||||||||||||||||
Sbjct: 1868 gcccagagccgccgccgcct 1849

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>gb|AC005546.1|AC005546 Homo sapiens chromosome 19, cosmid R29425, complete sequence
          Length = 41172

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 170   cccgtcgcccaactccgctcgtcc 193
             |||||||||| |||||||||||||
Sbjct: 37245 cccgtcgccccactccgctcgtcc 37268

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>gb|AC011446.6|AC011446 Homo sapiens chromosome 19 clone CTC-250I14, complete sequence
          Length = 115932

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 170 cccgtcgcccaactccgctcgtcc 193
           |||||||||| |||||||||||||
Sbjct: 546 cccgtcgccccactccgctcgtcc 569

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 230      ccccgtcgtggccgcagccg 249
                ||||||||||||||||||||
Sbjct: 13420277 ccccgtcgtggccgcagccg 13420258

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>dbj|AP003337.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1111_G12
          Length = 112664

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   ccccgtcgtggccgcagccg 249
             ||||||||||||||||||||
Sbjct: 64830 ccccgtcgtggccgcagccg 64811

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>gb|AC084125.9| Homo sapiens chromosome 8, clone CTD-2517M22, complete sequence
          Length = 197294

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 145    cgcccagagccgccgccgcc 164
              ||||||||||||||||||||
Sbjct: 166233 cgcccagagccgccgccgcc 166214

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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 77     accggcaacatcgtccgcgcccgc 100
              ||||||| ||||||||||||||||
Sbjct: 181503 accggcatcatcgtccgcgcccgc 181480

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>dbj|AK121837.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033100K08, full
            insert sequence
          Length = 1560

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 230  ccccgtcgtggccgcagccg 249
            ||||||||||||||||||||
Sbjct: 1171 ccccgtcgtggccgcagccg 1190

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>dbj|AK068939.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170C22, full
            insert sequence
          Length = 1560

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 230  ccccgtcgtggccgcagccg 249
            ||||||||||||||||||||
Sbjct: 1171 ccccgtcgtggccgcagccg 1190

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>gb|AF429685.1| Lactobacillus homohiochii strain ATCC 15434 60 kDa heat shock
           protein (HSP60) gene, partial cds
          Length = 552

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 72  gcttcaccggcaacatcgtc 91
           ||||||||||||||||||||
Sbjct: 497 gcttcaccggcaacatcgtc 478


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,074,385
Number of Sequences: 3902068
Number of extensions: 3074385
Number of successful extensions: 80629
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79986
Number of HSP's gapped (non-prelim): 642
length of query: 453
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 431
effective length of database: 17,147,199,772
effective search space: 7390443101732
effective search space used: 7390443101732
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result