>BAZ1A_XENLA (Q8UVR5) Bromodomain adjacent to zinc finger domain 1A|
           (ATP-utilizing chromatin assembly and remodely factor 1)
           (xACF1) (Fragment)
          Length = 627

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
 Frame = +2

Query: 68  APPPRTEAKKQVARQGNQAKRTPKQGPLPRTLGDPXXXXXXXXXXXXXXXKPRTYMAPA- 244
           +PP R  AK Q+  +    K T K GP P+T G                   +T  AP+ 
Sbjct: 327 SPPKRGRAKVQLPLKMRGGKATGKLGPKPKT-GKQSTPKNTQPAPEGRGQGKKTRSAPSL 385

Query: 245 -PADGV-ASDEPVHKGRTNSILLPILGV 322
            P   + ASD P H    NS L+ ++ V
Sbjct: 386 EPTSRLSASDSPAHGVSPNSSLVNVVTV 413

>CHSD_EMENI (P78611) Chitin synthase D (EC 2.4.1.16) (Chitin-UDP|
           acetyl-glucosaminyl transferase D) (Class-V chitin
           synthase D)
          Length = 1184

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +1

Query: 67  GSTTPNRSQKTSSQARQPSKAHAKARAFASNPGRPTSPHHHRFR---QSRRQ 213
           G T+P R +  +S  R+PS+   +     SN   PTSP HHR      SR Q
Sbjct: 8   GKTSPRREE--TSAFREPSRRRRRESDSLSN-NDPTSPRHHRHHRSHSSRHQ 56

>SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog|
          Length = 713

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = +1

Query: 52  SGFLHGSTTPNR--SQKTSSQARQPSKAHAKARAFASN 159
           S F+H  TTP+R  SQ+ SS+A Q + A+++ R   +N
Sbjct: 9   SDFIHSVTTPDRYASQQRSSKASQSAGANSQNRPLYNN 46

>PDLI2_RAT (Q6AYD6) PDZ and LIM domain protein 2|
          Length = 349

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 64  HGSTTPNRSQKTSSQARQPSKAHAKARAFASNPGRPTSP 180
           H  T P   Q TS QA   S + +  R    +PGRP+SP
Sbjct: 170 HHLTYPG--QPTSQQAGHSSPSDSTVRVLLHSPGRPSSP 206

>PRIC1_RAT (Q71QF9) Prickle-like protein 1 (REST/NRSF-interacting LIM domain|
           protein 1)
          Length = 831

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 106 QARQPSKAHAKARAFASNPGRPTSPHHHRFRQSRR 210
           + RQP  +    R       R + PHHHR R+SR+
Sbjct: 646 EIRQPPMSERTRRRVYHFEERGSRPHHHRHRRSRK 680

>SIMA_DROME (Q24167) Protein similar|
          Length = 1507

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +1

Query: 70  STTPNRSQKTSSQARQP-SKAHAKARAFASNPGRPTSPHHHRFRQSRRQAQ 219
           S   N S   +S A  P S     + A ASNP       HH  +Q ++Q Q
Sbjct: 725 SAPSNTSSSNNSYANSPLSPLTPNSTATASNPSHQQQQQHHNQQQQQQQQQ 775

>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)|
          Length = 1362

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +1

Query: 70  STTPNRSQKTSSQARQPSKAHAKARAFASNPGRPTSPHHHRFRQSRRQA 216
           S + + S+ +SS +       A       +PGR    HHH   Q  +QA
Sbjct: 701 SESESSSESSSSDSEDSETEMAPKSKKKGHPGREQKKHHHHHHQQMQQA 749

>SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine protein kinase|
           (EC 2.7.11.1) (Aortic preferentially expressed protein
           1) (APEG-1)
          Length = 3262

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = +2

Query: 80  RTEAKKQVARQGNQAKRTPKQGPLPRTLGDPXXXXXXXXXXXXXXXKPRTYMAPAPAD-G 256
           R+ +++++ R     + T ++ P PR  G+P                P     P P+  G
Sbjct: 508 RSTSREELVRSHESLRATLQRAPSPREPGEPPLFSRPSTPKTSRAVSPAATQPPPPSGAG 567

Query: 257 VASDEP 274
            + DEP
Sbjct: 568 KSGDEP 573

>HOX3_BRAFL (P50901) Homeobox protein HOX3|
          Length = 411

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 25/80 (31%), Positives = 29/80 (36%)
 Frame = +2

Query: 59  SSTAPPPRTEAKKQVARQGNQAKRTPKQGPLPRTLGDPXXXXXXXXXXXXXXXKPRTYMA 238
           S+ +P P + A   V   GN     P+QGP   T G P                 R Y  
Sbjct: 295 SNHSPCPPSSAPHPVP-MGNHVPH-PRQGPPHMTNGLPASPLEVVSQ--------RQYTP 344

Query: 239 PAPADGVASDEPVHKGRTNS 298
           PAP        P H G TNS
Sbjct: 345 PAPGPSPTGPGPGHHGLTNS 364

>SFR11_HUMAN (Q05519) Splicing factor arginine/serine-rich 11 (Arginine-rich 54|
           kDa nuclear protein) (p54)
          Length = 484

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +1

Query: 76  TPNRSQKTSSQARQPSKAHAKARA--FASNPGRPTSPHHHRFRQSRRQAQT 222
           TP+ S+   S++R   ++H+K+R+   + +P R  S    R R+SR  ++T
Sbjct: 260 TPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKT 310

>BVCP_GVCL (P41726) DNA-binding protein (Arginine-rich protein 7.3 kDa) (Basic|
           viral core protein) (Nucleocapsid protein)
          Length = 58

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +1

Query: 82  NRSQKTSSQARQPSKAHAKARAFASNPGRPTSPHHHRFRQ 201
           +RS+  S ++R   ++ +++R+ + +  R  SP+HH   Q
Sbjct: 17  SRSRSGSDRSRSRYRSRSRSRSRSRSRARSRSPYHHHINQ 56

>ETFA_MYCTU (O53275) Electron transfer flavoprotein alpha-subunit (Alpha-ETF)|
           (Electron transfer flavoprotein large subunit) (ETFLS)
          Length = 318

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 25/71 (35%), Positives = 32/71 (45%)
 Frame = -2

Query: 273 GSSEATPSAGAGAMYVRGLRLPAALAKAVVVGARGSPRVRGKGPCFGVRFAWLPCLATCF 94
           G+ EA P+AGAG      + +PAA   A  + AR  P V G  P            AT  
Sbjct: 153 GAVEAEPAAGAGEQV--SVEVPAAAENAARITAR-EPAVAGDRPEL--------TEATIV 201

Query: 93  LASVRGGGAVE 61
           +A  RG G+ E
Sbjct: 202 VAGGRGVGSAE 212

>IBP1_BOVIN (P24591) Insulin-like growth factor-binding protein 1 precursor|
           (IGFBP-1) (IBP-1) (IGF-binding protein 1)
          Length = 263

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 25/73 (34%), Positives = 28/73 (38%), Gaps = 13/73 (17%)
 Frame = -2

Query: 318 PRMGSRMELVRPL*TGSSEATPSAGAGAMYVRGLRLPAALAKAVVVGAR--------GSP 163
           P    RM L  P+     E T SAG G   +  L L AA   A    AR        G P
Sbjct: 34  PCSAERMALCPPVPASCPELTRSAGCGCCPMCALPLGAACGVATARCARGLSCRALPGEP 93

Query: 162 R-----VRGKGPC 139
           R      RG+G C
Sbjct: 94  RPLHALTRGQGAC 106

>COAT_BBV (P04329) Protein alpha [Contains: Coat protein beta (EC 3.4.23.44)|
           (Nodavirus endopeptidase); Coat protein gamma]
          Length = 407

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 59  SSTAPPPRTEAKKQVARQGNQAKRTPKQG 145
           + TAP P+    KQ  R+ N+A+R  +QG
Sbjct: 20  TQTAPVPQQNVPKQPRRRRNRARRNRRQG 48


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.122    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,522,251
Number of Sequences: 219361
Number of extensions: 527571
Number of successful extensions: 2409
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2402
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)