Clone Information

BLAST Search Result

Clone Name	bast55h08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CJ022_MOUSE (Q6PDY2) Protein C10orf22 homolog	32	0.65
2	RESIL_DROME (Q9V7U0) Pro-resilin precursor	32	0.85
3	CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain	31	1.1
4	CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor	31	1.5
5	CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor	31	1.5
6	CL43_BOVIN (P42916) Collectin-43 precursor (CL-43) (43 kDa colle...	30	1.9
7	SYN1_RAT (P09951) Synapsin-1 (Synapsin I)	30	1.9
8	CONG_BOVIN (P23805) Conglutinin precursor	30	1.9
9	ZXDA_HUMAN (P98168) Zinc finger X-linked protein ZXDA	30	2.5
10	CJ022_HUMAN (Q96SZ5) Protein C10orf22	30	2.5
11	DAAM1_MOUSE (Q8BPM0) Disheveled-associated activator of morphoge...	30	2.5
12	MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-...	30	3.2
13	MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosi...	30	3.2
14	DYN1_CAEEL (P39055) Dynamin (EC 3.6.5.5)	30	3.2
15	Y4069_NOCFA (Q5YSC3) UPF0090 protein nfa40690	30	3.2
16	SFTPD_BOVIN (P35246) Pulmonary surfactant-associated protein D p...	30	3.2
17	CO1A2_RANCA (O42350) Collagen alpha-2(I) chain precursor	30	3.2
18	PEB1_DROME (Q9U6L5) Ejaculatory bulb-specific protein 1 precurso...	29	4.2
19	HXD11_HUMAN (P31277) Homeobox protein Hox-D11 (Hox-4F)	29	4.2
20	OMP19_AGRT5 (Q8UC57) Outer membrane lipoprotein omp19 homolog pr...	29	4.2
21	SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)	29	4.2
22	CL46_BOVIN (Q8MHZ9) Collectin-46 precursor (CL-46) (46 kDa colle...	29	4.2
23	CN004_MOUSE (Q8K3X4) Protein C14orf4 homolog	29	5.5
24	LSPA_STRCO (Q9S2X7) Lipoprotein signal peptidase (EC 3.4.23.36) ...	29	5.5
25	MTMR1_HUMAN (Q13613) Myotubularin-related protein 1 (EC 3.1.3.-)	29	5.5
26	NMDE4_HUMAN (O15399) Glutamate [NMDA] receptor subunit epsilon 4...	29	5.5
27	DYN_DROME (P27619) Dynamin (EC 3.6.5.5) (dDyn) (Protein shibire)	29	5.5
28	CO9A3_HUMAN (Q14050) Collagen alpha-3(IX) chain precursor	29	5.5
29	CENPA_HUMAN (P49450) Centromere protein A (CENP-A) (Centromere a...	29	5.5
30	PKH1_YEAST (Q03407) Serine/threonine-protein kinase PKH1 (EC 2.7...	29	5.5
31	HCN2_HUMAN (Q9UL51) Potassium/sodium hyperpolarization-activated...	29	5.5
32	CPSF6_BRARE (Q6NWC6) Cleavage and polyadenylation specificity fa...	29	5.5
33	CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor	29	5.5
34	MBL1_RAT (P19999) Mannose-binding protein A precursor (MBP-A) (M...	29	5.5
35	SF3B1_XENLA (O57683) Splicing factor 3B subunit 1 (Spliceosome-a...	28	7.2
36	SF3B1_MOUSE (Q99NB9) Splicing factor 3B subunit 1 (Spliceosome-a...	28	7.2
37	SF3B1_HUMAN (O75533) Splicing factor 3B subunit 1 (Spliceosome-a...	28	7.2
38	GCM1_HUMAN (Q9NP62) Chorion-specific transcription factor GCMa (...	28	7.2
39	CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragme...	28	7.2
40	CAPU_DROME (Q24120) Protein cappuccino	28	7.2
41	CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor	28	7.2
42	YD6C_SCHPO (Q10324) Hypothetical protein C17G8.12 in chromosome I	28	7.2
43	NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 p...	28	7.2
44	NMDE4_MOUSE (Q03391) Glutamate [NMDA] receptor subunit epsilon 4...	28	7.2
45	TAF1C_RAT (Q6P773) TATA box-binding protein-associated factor, R...	28	7.2
46	SRPK1_HUMAN (Q96SB4) Serine/threonine-protein kinase SRPK1 (EC 2...	28	7.2
47	ERF_MOUSE (P70459) ETS domain-containing transcription factor ERF	28	7.2
48	DIAP3_HUMAN (Q9NSV4) Protein diaphanous homolog 3 (Diaphanous-re...	28	9.4
49	ZXDB_HUMAN (P98169) Zinc finger X-linked protein ZXDB	28	9.4
50	WBP11_RAT (Q5PQQ2) WW domain-binding protein 11 (Wbp-11)	28	9.4
51	WBP11_MOUSE (Q923D5) WW domain-binding protein 11 (WBP-11)	28	9.4
52	ERF_HUMAN (P50548) ETS domain-containing transcription factor ER...	28	9.4
53	RIM_CAEEL (Q22366) Rab-3-interacting molecule unc-10 (Rim) (Unco...	28	9.4
54	COL19_CAEEL (P18835) Cuticle collagen 19 precursor	28	9.4
55	MEF2_DROME (P40791) Myocyte-specific enhancer factor 2 (MADS dom...	28	9.4
56	DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-re...	28	9.4
57	AT12A_RABIT (Q9TV52) Potassium-transporting ATPase alpha chain 2...	28	9.4

>CJ022_MOUSE (Q6PDY2) Protein C10orf22 homolog|
          Length = 256

 Score = 32.0 bits (71), Expect = 0.65
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = +1

Query: 130 LVRFDPPGAPALSVGGIFPPLDPCPGGPRSCQR----DPVSPSRAAGSLCDPPLRLLL 291
           L + D    PA  +  + PP DP  G  R C      +P+ P  A+GS CD P  + L
Sbjct: 178 LHQIDAVDGPAAFLDILAPPYDPEDG--RDCHYYRVVEPIRPKEASGSACDLPREVWL 233

to top

>RESIL_DROME (Q9V7U0) Pro-resilin precursor|
          Length = 620

 Score = 31.6 bits (70), Expect = 0.85
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -2

Query: 212 GPPGHGSSGGKIPPTESAGAPGGSN 138
           G PG G++GG+  P+ S GAPGG N
Sbjct: 203 GAPGGGNNGGR--PSSSYGAPGGGN 225



 Score = 29.6 bits (65), Expect = 3.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 212 GPPGHGSSGGKIPPTESAGAPGGSN 138
           G PG    GG+  P++S GAPGG N
Sbjct: 34  GAPGQSGPGGR--PSDSYGAPGGGN 56



 Score = 28.5 bits (62), Expect = 7.2
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 257 PAAREGLTGSRWQERGPPGHGSSGGKIPPTESAGAPGGSN 138
           P    G  G      G PG G +GG+  P+++ GAPGG N
Sbjct: 91  PGGGNGNGGRPSSSYGAPG-GGNGGR--PSDTYGAPGGGN 127



 Score = 28.1 bits (61), Expect = 9.4
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -2

Query: 242 GLTGSRWQERGPPGHGSSGGKIPPTESAGAPGGSN 138
           G  G      G PG G+  G   P+ S GAPGG N
Sbjct: 79  GYAGKPSDTYGAPGGGNGNGG-RPSSSYGAPGGGN 112

to top

>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain|
          Length = 1049

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 257 PAAREGLTGSRWQ--ERGPPGHGSSGGKIPPTESAGAPGG 144
           PA   G +G+  Q  E GP GH  + G   P  S G+PGG
Sbjct: 199 PAGSPGSSGAPGQRGEPGPQGHAGAPGPPGPPGSDGSPGG 238



 Score = 29.3 bits (64), Expect = 4.2
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2

Query: 215 RGPPGHGSSGGKIPPTESAGAPG 147
           RGPPG   S G   P  S+GAPG
Sbjct: 722 RGPPGPPGSNGNPGPPGSSGAPG 744



 Score = 29.3 bits (64), Expect = 4.2
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = -2

Query: 257 PAAREGLTGSRWQERGPPGHGSSGGKIPPTESAGAPG 147
           PA   GL G    E+GPPG     G   P   AG PG
Sbjct: 337 PAGANGLPG----EKGPPGDRGGPGPAGPRGVAGEPG 369



 Score = 28.9 bits (63), Expect = 5.5
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 257 PAAREGLTGSRWQERGPPGHGSSGGKIPPTESAGAPG 147
           P   +GL G+     GPPG     G+  P   AGAPG
Sbjct: 481 PQGLQGLPGTS----GPPGENGKPGEPGPKGEAGAPG 513

to top

>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor|
          Length = 1464

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -2

Query: 257 PAAREGLTGSRWQ--ERGPPGHGSSGGKIPPTESAGAPGG 144
           PA   G  GS  Q  E GP GH  + G   P  + G+PGG
Sbjct: 354 PAGSPGSNGSPGQRGEPGPQGHAGAQGPPGPPGNNGSPGG 393



 Score = 28.5 bits (62), Expect = 7.2
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -2

Query: 257 PAAREGLTGSRWQERGPPGHGSSGGKIPPTESAGAPG 147
           PA   G+ G    E+GPPG     G   P   AG PG
Sbjct: 492 PAGPNGIPG----EKGPPGERGGPGPAGPRGVAGEPG 524

to top

>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor|
          Length = 1463

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -2

Query: 257 PAAREGLTGSRWQ--ERGPPGHGSSGGKIPPTESAGAPGG 144
           PA   G  GS  Q  E GP GH  + G   P  + G+PGG
Sbjct: 354 PAGSPGSNGSPGQRGEPGPQGHAGAQGPPGPPGNNGSPGG 393



 Score = 28.5 bits (62), Expect = 7.2
 Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
 Frame = -2

Query: 257 PAAREGLTGSRWQ-----ERGPPGHGSSGGKIPPTESAGAPGGS 141
           PA   G  G   +     ERG PG    GG   P  +AG PGGS
Sbjct: 807 PAGFPGAPGQNGEPGAKGERGAPGEKGEGG---PPGAAGPPGGS 847



 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 257 PAAREGLTGSRWQERGPPGHGSSGGKIPPTESAGAPG 147
           P   +G+ G+     GPPG     G+  P   AGAPG
Sbjct: 636 PQGLQGIPGTS----GPPGENGKPGEPGPKGEAGAPG 668

to top

>CL43_BOVIN (P42916) Collectin-43 precursor (CL-43) (43 kDa collectin)|
          Length = 321

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = -2

Query: 257 PAAREGLTGSRWQERGPPGHGSSGGKIPPTESAGAPG 147
           PA REG +G R    GPPG     G+  P    GAPG
Sbjct: 74  PAGREGPSG-RQGSMGPPGTPGPKGEPGPEGGVGAPG 109

to top

>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)|
          Length = 704

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -2

Query: 257 PAAREGLTGSRWQERGPPG---HGSSGGKIPPTESAGAPGGSNR 135
           PAAR   + S  ++ GPP      S  G  PP  S  +PGG  R
Sbjct: 542 PAARPPASPSPQRQAGPPQATRQASISGPAPPKVSGASPGGQQR 585

to top

>CONG_BOVIN (P23805) Conglutinin precursor|
          Length = 371

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -2

Query: 257 PAAREGLTGSRWQERGPPGHGSSGGKIPPTESAGAPG 147
           PA REG +G +    GPPG     G+  P    GAPG
Sbjct: 113 PAGREGPSGKQGS-MGPPGTPGPKGETGPKGGVGAPG 148

to top

>ZXDA_HUMAN (P98168) Zinc finger X-linked protein ZXDA|
          Length = 799

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
 Frame = +2

Query: 5   PFPLQTPHPSRQNREIGSEHHQQQIPRHGNELLPVLLPLRGGWSDSILQARRRSPLV--- 175
           P P+  P P+       + H+Q  + R  N +L +  P    W      A++   L+   
Sbjct: 149 PAPISAPGPAAAFAGTVTIHNQDLLLRFENGVLTLATPPPHAWEPGAAPAQQPRCLIAPQ 208

Query: 176 ESFPRSIHVRAAPVLASEIRSVPP 247
             FP++ H    P L S++    P
Sbjct: 209 AGFPQAAHPGDCPELRSDLLLAEP 232

to top

>CJ022_HUMAN (Q96SZ5) Protein C10orf22|
          Length = 270

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = +1

Query: 130 LVRFDPPGAPALSVGGIFPPLDPCPGGPRSCQR----DPVSPSRAAGSLCDPPLRLLL 291
           L + D    PA  +  + PP DP  G  R C      +PV P  A+ S CD P  + L
Sbjct: 192 LHQIDAVEGPAAFLDILAPPYDPDDG--RDCHYYRVLEPVRPKEASSSACDLPREVWL 247

to top

>DAAM1_MOUSE (Q8BPM0) Disheveled-associated activator of morphogenesis 1|
          Length = 1071

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = +1

Query: 145 PPGAPALSVGGIFPPLDPCP-GGPRSCQRDPVSPSRAAGSLCDP--PLRLLLSRREDP 309
           PP  P LS G + PP  P P GGP      P  P    G L  P  P+ L L ++  P
Sbjct: 551 PPPPPLLSGGALPPPPPPLPAGGP----PPPPGPPPLGGVLPPPGAPVSLTLKKKNIP 604

to top

>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding|
           protein MBD6)
          Length = 1003

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +1

Query: 148 PGAPALSVGGIFPPLDPCPGGPRSCQRDPVSPSRAAGSLCDP 273
           PG P+       PP  P  GGP S   +P S S+A  +L  P
Sbjct: 140 PGPPSARPPCRVPPTTPLNGGPGSLPPEPPSVSQAFPTLAGP 181

to top

>MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosin-15)|
          Length = 3530

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 148 PGAPALSV--GGIFPPLDPCPGGPRSCQRDPVSPSRAAGSLCDP 273
           P +P LS+  G   PP  P    PRS Q  P +P RAAG L  P
Sbjct: 794 PPSPQLSLRTGPFQPPFLPPARRPRSLQESP-APRRAAGRLGPP 836

to top

>DYN1_CAEEL (P39055) Dynamin (EC 3.6.5.5)|
          Length = 830

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = +1

Query: 145 PPGAPALSVGGIFPPLDPC---PGGP 213
           PPGAP    GG++PPL P    PGGP
Sbjct: 798 PPGAPG-GGGGMYPPLIPTRPGPGGP 822

to top

>Y4069_NOCFA (Q5YSC3) UPF0090 protein nfa40690|
          Length = 217

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 133 VRFDPPGAPALSVGGIFPPLDPCPGGPRSCQRD-PVSPSRAAGSLCDP 273
           V F PPGA  L + G   P  P PG  R+   D  +S   +  +  DP
Sbjct: 164 VEFSPPGARELELAGGVAPGRPDPGTDRAIAADGAISEETSTAAASDP 211

to top

>SFTPD_BOVIN (P35246) Pulmonary surfactant-associated protein D precursor (SP-D)|
           (PSP-D)
          Length = 369

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -2

Query: 257 PAAREGLTGSRWQERGPPGHGSSGGKIPPTESAGAPG 147
           PA REG +G +    GPPG     G   P    GAPG
Sbjct: 113 PAGREGPSGKQGS-MGPPGTPGPKGDTGPKGGVGAPG 148

to top

>CO1A2_RANCA (O42350) Collagen alpha-2(I) chain precursor|
          Length = 1355

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = -2

Query: 257 PAAREGLTGSRWQERGPPGHGSSGGKIPPTESAGAPGGSNRT 132
           PA   G+ G R    G PG     G   PT  AG PG +  T
Sbjct: 689 PAGPSGVAGPR----GAPGERGEAGPAGPTGFAGPPGAAGHT 726

to top

>PEB1_DROME (Q9U6L5) Ejaculatory bulb-specific protein 1 precursor (Ejaculatory|
           bulb-specific protein I) (PEB-me)
          Length = 377

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 145 PPGAPALSVGGIFPPLDPCPGGPRSCQRDPVSPS 246
           P  +P +  GG+FP   P PGGP   +  P  PS
Sbjct: 150 PINSPPIRPGGLFPG-GPSPGGPSPGEPSPGEPS 182

to top

>HXD11_HUMAN (P31277) Homeobox protein Hox-D11 (Hox-4F)|
          Length = 338

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -2

Query: 242 GLTGSRWQERGPPGHGSSGGKIPPTESAGAPGG 144
           GL  ++W  RG  G GS+GG      S G PGG
Sbjct: 67  GLERAKWPYRGGGGGGSAGG----GSSGGGPGG 95

to top

>OMP19_AGRT5 (Q8UC57) Outer membrane lipoprotein omp19 homolog precursor|
          Length = 180

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 209 PPGHGSSGGKIPPTESAGAPGGSNRTS 129
           PP  G+SG + P   ++ APGG N  S
Sbjct: 54  PPPDGASGSQFPSAPASAAPGGVNVAS 80

to top

>SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)|
          Length = 705

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = -2

Query: 257 PAAREGLTGSRWQERGPPG---HGSSGGKIPPTESAGAPGGSNR 135
           PAAR   + S  ++ GPP      S  G  PP  S   PGG  R
Sbjct: 544 PAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQR 587

to top

>CL46_BOVIN (Q8MHZ9) Collectin-46 precursor (CL-46) (46 kDa collectin)|
          Length = 371

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -2

Query: 257 PAAREGLTGSRWQERGPPGHGSSGGKIPPTESAGAPG 147
           PA REG +G +    GPPG     G   P    GAPG
Sbjct: 113 PAGREGPSGKQGS-MGPPGTPGPKGDTGPKGGMGAPG 148

to top

>CN004_MOUSE (Q8K3X4) Protein C14orf4 homolog|
          Length = 775

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -2

Query: 209 PPGHGSSGGKIPPTES-AGAPGG 144
           PP HG  G + PPT +  GAPGG
Sbjct: 252 PPPHGLGGSRGPPTPAPPGAPGG 274

to top

>LSPA_STRCO (Q9S2X7) Lipoprotein signal peptidase (EC 3.4.23.36)|
           (Prolipoprotein signal peptidase) (Signal peptidase II)
           (SPase II)
          Length = 204

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 241 D*PDLAGKNGGRPDMDRAGERFHQRRAPAR 152
           D PD AG+   RPD D   E+  Q +AP R
Sbjct: 12  DIPDAAGEGQERPDADPEREQQEQEQAPER 41

to top

>MTMR1_HUMAN (Q13613) Myotubularin-related protein 1 (EC 3.1.3.-)|
          Length = 665

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 212 GPPGHGSSGGKIPPTESAGAPGGSNRTSL 126
           G P  G +GG+ PP  + GA  GS + S+
Sbjct: 16  GGPNPGPAGGRRPPRAAGGATAGSRQPSV 44

to top

>NMDE4_HUMAN (O15399) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D) (EB11)
          Length = 1336

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 23/70 (32%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
 Frame = +1

Query: 145  PPGAPALSVGGIF-------PPLDPCPGGPRSCQRDPVSPSRAAGSLCDPPLRLLLSRRE 303
            PP  P  S   I        PP    PG P      P +P  AA +   PPL  L    E
Sbjct: 999  PPQKPPASYFAIVRDKEPAEPPAGAFPGFP-----SPPAPPAAAATAVGPPLCRLAFEDE 1053

Query: 304  DPGFLGRFPR 333
             P    R+PR
Sbjct: 1054 SPPAPARWPR 1063

to top

>DYN_DROME (P27619) Dynamin (EC 3.6.5.5) (dDyn) (Protein shibire)|
          Length = 877

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 148 PGAPALS-VGGIFPPLDPCPGGPRSCQRDPVSPSRAAGSLCDPPL 279
           PG PA S +GG  PPL P  G P      P  P+R  G    PPL
Sbjct: 775 PGPPAQSSLGGRNPPLPPSTGRPA-----PAIPNRPGGGA--PPL 812

to top

>CO9A3_HUMAN (Q14050) Collagen alpha-3(IX) chain precursor|
          Length = 684

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = -2

Query: 257 PAAREGLTGSRWQ--ERGPPGHGSSGGKIPPTESAGAPG 147
           P+   G+ G      ERG  GH  S G + P    GAPG
Sbjct: 362 PSGEPGVPGDAGMPGERGEAGHRGSAGALGPQGPPGAPG 400

to top

>CENPA_HUMAN (P49450) Centromere protein A (CENP-A) (Centromere autoantigen A)|
          Length = 140

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 2   APFPLQTPHPSRQNREIGSEHHQQQIPRHG 91
           +P P  TP PSR+   +G+  HQ    R G
Sbjct: 17  SPSPTPTPGPSRRGPSLGASSHQHSRRRQG 46

to top

>PKH1_YEAST (Q03407) Serine/threonine-protein kinase PKH1 (EC 2.7.11.1)|
           (3-phosphoinositide-dependent protein kinase 1)
          Length = 766

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 256 LPLGRD*PDLAGKNGGRPDMDRAGERFHQRRAPARLEDRIGPASAE 119
           +PL  D P +  + G  P M R  E + +R A   ++D + PA+ E
Sbjct: 67  IPLANDDPGMQHEMGLDPSMRRRREEWAERGAAKIVKDVVDPATGE 112

to top

>HCN2_HUMAN (Q9UL51) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 2 (Brain cyclic nucleotide
           gated channel 2) (BCNG-2)
          Length = 889

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 130 LVRFDPPG-APALSVGGIFPPLDPCPGGPRSCQRDPVSP 243
           LVR  PPG APA +  G  PP  P PG P S +    SP
Sbjct: 757 LVRRPPPGPAPAAASPGPPPPASP-PGAPASPRAPRTSP 794

to top

>CPSF6_BRARE (Q6NWC6) Cleavage and polyadenylation specificity factor 6|
          Length = 545

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
 Frame = -2

Query: 212 GPPGHGSSGGKIPPTES----AGAPGGSNR 135
           GPPG GS GG  PP +      G PG  +R
Sbjct: 187 GPPGSGSRGGGFPPGKGQRRFPGPPGQGDR 216

to top

>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -2

Query: 260 DPAAREGLTGSRWQ--ERGPPGHGSSGGKIPPTESAGAPG 147
           +   R+G  G R    ERGPPG     G+  PT   G PG
Sbjct: 27  EETVRKGPAGDRGPRGERGPPGPPGRDGEDGPTGPPGPPG 66

to top

>MBL1_RAT (P19999) Mannose-binding protein A precursor (MBP-A)|
           (Mannan-binding protein)
          Length = 238

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = -2

Query: 248 REGLTGSRWQERGPPGHGSSG-----GKIPPTESAGAPG 147
           R+G  G +  E+G PG G  G     GK+ P  S GAPG
Sbjct: 37  RDGRDGPKG-EKGEPGQGLRGLQGPPGKLGPPGSVGAPG 74

to top

>SF3B1_XENLA (O57683) Splicing factor 3B subunit 1 (Spliceosome-associated|
           protein 155) (SAP 155) (SF3b155) (Pre-mRNA-splicing
           factor SF3b 155 kDa subunit) (146 kDa nuclear protein)
          Length = 1307

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 12/46 (26%)
 Frame = -2

Query: 230 SRWQE-----RGPPGHGSSGGKIPPTESAG-------APGGSNRTS 129
           +RW E     R  PGHGS   + P T+  G        PG S R S
Sbjct: 294 NRWDETPKTERDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKS 339

to top

>SF3B1_MOUSE (Q99NB9) Splicing factor 3B subunit 1 (Spliceosome-associated|
           protein 155) (SAP 155) (SF3b155) (Pre-mRNA-splicing
           factor SF3b 155 kDa subunit)
          Length = 1304

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 12/46 (26%)
 Frame = -2

Query: 230 SRWQE-----RGPPGHGSSGGKIPPTESAG-------APGGSNRTS 129
           +RW E     R  PGHGS   + P T+  G        PG S R S
Sbjct: 291 NRWDETPKTERDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKS 336

to top

>SF3B1_HUMAN (O75533) Splicing factor 3B subunit 1 (Spliceosome-associated|
           protein 155) (SAP 155) (SF3b155) (Pre-mRNA-splicing
           factor SF3b 155 kDa subunit)
          Length = 1304

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 12/46 (26%)
 Frame = -2

Query: 230 SRWQE-----RGPPGHGSSGGKIPPTESAG-------APGGSNRTS 129
           +RW E     R  PGHGS   + P T+  G        PG S R S
Sbjct: 291 NRWDETPKTERDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKS 336

to top

>GCM1_HUMAN (Q9NP62) Chorion-specific transcription factor GCMa (Glial cells|
           missing homolog 1) (GCM motif protein 1) (hGCMa)
          Length = 436

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = +2

Query: 149 QARRRSPLVESFPRSIHVRAAPVLASEIRSVPPERQDLSVIPLSAFFFPGGKIRGFLGGF 328
           +ARR    V + P S+ +      ++E RS+P E Q    +PL+  F  G ++ G   G 
Sbjct: 164 EARRAMKKVNTAPSSVSLSLKG--STETRSLPGETQSQGSLPLTWSFQEGVQLPGSYSGH 221

Query: 329 L 331
           L
Sbjct: 222 L 222

to top

>CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragments)|
          Length = 1362

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -2

Query: 245  EGLTGSRWQ--ERGPPGHGSSGGKIPPTESAGAPGGSNRTSL 126
            +GL G   Q  ++GPPG+    G   P   +G PG   R  L
Sbjct: 1027 QGLPGLAGQHGDQGPPGNNGPAGPRGPPGPSGPPGKDGRNGL 1068

to top

>CAPU_DROME (Q24120) Protein cappuccino|
          Length = 1059

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = +1

Query: 145 PPGAPALSVGGIFPPLDPCPGGPRSCQRDPVSPSRAAGSLCDPP 276
           PP  P  + G   PP  P PG   +    P +P    G +  PP
Sbjct: 509 PPPPPLANYGAPPPPPPPPPGSGSAPPPPPPAPIEGGGGIPPPP 552

to top

>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor|
          Length = 1466

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 257 PAAREGLTGSRWQERGPPGHGSSGGKIPPTESAGAPG 147
           P   +GL G+     GPPG     G+  P   AGAPG
Sbjct: 637 PQGLQGLPGTG----GPPGENGKPGEPGPKGDAGAPG 669



 Score = 28.5 bits (62), Expect = 7.2
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -2

Query: 257 PAAREGLTGSRWQ--ERGPPGHGSSGGKIPPTESAGAPGG 144
           PA   G  G+  Q  E GP GH  + G   P    G+PGG
Sbjct: 355 PAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGG 394

to top

>YD6C_SCHPO (Q10324) Hypothetical protein C17G8.12 in chromosome I|
          Length = 608

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
 Frame = +2

Query: 14  LQTPHPSRQNREIGSEHHQQQI------PRHGNELLPVLLPLRGGWSDSILQARRRSPLV 175
           L   HPSRQ     +    +QI      P  GNELLP+   LR     +  + + +  LV
Sbjct: 429 LPPKHPSRQPTVRATPSTGKQIEPPNDEPSIGNELLPLFESLRFENRKTTSKPKAKKTLV 488

Query: 176 ESFPRSIH 199
            S P   H
Sbjct: 489 TSIPTKPH 496

to top

>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D)
          Length = 1323

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 18/50 (36%), Positives = 21/50 (42%)
 Frame = +1

Query: 184  PPLDPCPGGPRSCQRDPVSPSRAAGSLCDPPLRLLLSRREDPGFLGRFPR 333
            PP    PG P      P +P  AA +   PPL  L    E P    R+PR
Sbjct: 1014 PPAGAFPGFP-----SPPAPPAAAAAAVGPPLCRLAFEDESPPAPSRWPR 1058

to top

>NMDE4_MOUSE (Q03391) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D)
          Length = 1323

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 18/50 (36%), Positives = 21/50 (42%)
 Frame = +1

Query: 184  PPLDPCPGGPRSCQRDPVSPSRAAGSLCDPPLRLLLSRREDPGFLGRFPR 333
            PP    PG P      P +P  AA +   PPL  L    E P    R+PR
Sbjct: 1014 PPAGAFPGFP-----SPPAPPAAAAAAVGPPLCRLAFEDESPPAPSRWPR 1058

to top

>TAF1C_RAT (Q6P773) TATA box-binding protein-associated factor, RNA polymerase|
           I, subunit C (TATA box-binding protein-associated factor
           1C) (TBP-associated factor 1C)
          Length = 842

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 240 TDRISLARTGAARTWIERGKDSTNGERRRAWR 145
           T+R++ A  G A  W +R +D T+G +R++ R
Sbjct: 692 TERLTKAWEGQAAAWWKRHQDQTSGSQRQSKR 723

to top

>SRPK1_HUMAN (Q96SB4) Serine/threonine-protein kinase SRPK1 (EC 2.7.11.1)|
           (Serine/arginine-rich protein-specific kinase 1)
           (SR-protein-specific kinase 1) (SFRS protein kinase 1)
          Length = 826

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 17/45 (37%), Positives = 18/45 (40%)
 Frame = +1

Query: 145 PPGAPALSVGGIFPPLDPCPGGPRSCQRDPVSPSRAAGSLCDPPL 279
           PP  P L   G  P      G  RS    P  P+RA G L  P L
Sbjct: 49  PPHTPCLWAAGPRPSFRASSGAGRSRPLFPARPARALGPLQGPAL 93

to top

>ERF_MOUSE (P70459) ETS domain-containing transcription factor ERF|
          Length = 551

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 24/63 (38%), Positives = 24/63 (38%), Gaps = 15/63 (23%)
 Frame = +1

Query: 136 RFDPPGAPALSVGGIF--PPLDPCP-------------GGPRSCQRDPVSPSRAAGSLCD 270
           R  PPG P L   G F  PPL   P             GGP      PVSP    GSL  
Sbjct: 205 RARPPGPPEL---GAFRGPPLARLPHDPGVFRVYPRPRGGPEPLSPFPVSPLAGPGSLLP 261

Query: 271 PPL 279
           P L
Sbjct: 262 PQL 264

to top

>DIAP3_HUMAN (Q9NSV4) Protein diaphanous homolog 3 (Diaphanous-related formin-3)|
           (DRF3)
          Length = 1110

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
 Frame = +1

Query: 145 PPGAPALSVGGIFPPLDPCPGGPRSCQRDPVS-------PSRAAGSLCDPPLRLL 288
           PP  P  S GG+ PP  P P  P    R P S       P    G    PPL +L
Sbjct: 576 PPPPPLPSGGGVPPPPPPPPPPPLPGMRMPFSGPVPPPPPLGFLGGQNSPPLPIL 630

to top

>ZXDB_HUMAN (P98169) Zinc finger X-linked protein ZXDB|
          Length = 803

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
 Frame = +2

Query: 5   PFPLQTPHPSRQNREIGSEHHQQQIPRHGNELLPVLLPLRGGWSDSILQARRRSPLV--- 175
           P P+  P P+       + H+Q  + R  N +L +  P    W      A++   L+   
Sbjct: 153 PAPISAPGPAAAFAGTVTIHNQDLLLRFENGVLTLATPPPHAWEPGAAPAQQPGCLIAPQ 212

Query: 176 ESFPRSIHVRAAPVLASEIRSVPP 247
             FP + H    P L  ++    P
Sbjct: 213 AGFPHAAHPGDCPELPPDLLLAEP 236

to top

>WBP11_RAT (Q5PQQ2) WW domain-binding protein 11 (Wbp-11)|
          Length = 641

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = +1

Query: 145 PPGAPALSVGGIFPPLDPCPGGPRSCQRDPVSPSRAAGSLCDPPLRLLLSRRED 306
           PPG P    G + PPL P P GP      P +P    G L  PP  +   + +D
Sbjct: 496 PPGIPPPRPGMMRPPLVP-PLGPAPPGLFPPAPLPNPGVLSAPPSLIQRPKADD 548

to top

>WBP11_MOUSE (Q923D5) WW domain-binding protein 11 (WBP-11)|
          Length = 641

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = +1

Query: 145 PPGAPALSVGGIFPPLDPCPGGPRSCQRDPVSPSRAAGSLCDPPLRLLLSRRED 306
           PPG P    G + PPL P P GP      P +P    G L  PP  +   + +D
Sbjct: 496 PPGIPPPRPGMMRPPLVP-PLGPAPPGLFPPAPLPNPGVLSAPPSLIQRPKADD 548

to top

>ERF_HUMAN (P50548) ETS domain-containing transcription factor ERF (Ets2|
           repressor factor)
          Length = 548

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 24/63 (38%), Positives = 24/63 (38%), Gaps = 15/63 (23%)
 Frame = +1

Query: 136 RFDPPGAPALSVGGIF--PPLDPCP-------------GGPRSCQRDPVSPSRAAGSLCD 270
           R  PPG P L   G F  PPL   P             GGP      PVSP    GSL  
Sbjct: 205 RARPPGPPDL---GAFRGPPLARLPHDPGVFRVYPRPRGGPEPLSPFPVSPLAGPGSLLP 261

Query: 271 PPL 279
           P L
Sbjct: 262 PQL 264

to top

>RIM_CAEEL (Q22366) Rab-3-interacting molecule unc-10 (Rim) (Uncoordinated|
            protein 10)
          Length = 1563

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
 Frame = +2

Query: 5    PFPLQTPHPSRQNREIGSEHH----QQQIPRHGNELLPVL---LPLRGGWSD 139
            P PL   H  +Q   +  +HH    QQQ P+  N+ +  +   +P +G +SD
Sbjct: 1190 PHPLSQAHQQQQTAGVQPQHHQGFQQQQHPQQPNQQMQQMQPPMPNQGYYSD 1241

to top

>COL19_CAEEL (P18835) Cuticle collagen 19 precursor|
          Length = 289

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
 Frame = -2

Query: 257 PAAREGLTGSRWQ-----ERGPPGHGSSGGKIPPTESAGAPGGSNR 135
           P    GL GS         RGPPG     G+  P   AG PG + R
Sbjct: 151 PKGPSGLPGSAGPAGGNGRRGPPGPVGGPGEQGPQGDAGRPGAAGR 196

to top

>MEF2_DROME (P40791) Myocyte-specific enhancer factor 2 (MADS domain|
           transcription factor D-mef2)
          Length = 539

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 6/109 (5%)
 Frame = +2

Query: 35  RQNREIGSEHHQQQIPRHGNELLPVLLPLRGGWSDSILQARRRSPLVESFPRSIHVRAAP 214
           R    IG     +Q+P + +  LPV +P+ G + D++LQA          P+  H   +P
Sbjct: 128 RNQMAIGGAGAPRQLP-NSSYTLPVSVPVPGSYGDNLLQAS---------PQMSHTNISP 177

Query: 215 VLASEIRSVPPERQDLSVIPLSAFFFPGGKIRGFLGGF------LGGSP 343
                     P   +     +S   +P G +     G+      L GSP
Sbjct: 178 ---------RPSSSETDSGGMSLIIYPSGSMLEMSNGYPHSHSPLVGSP 217

to top

>DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-related formin-1)|
           (DRF1) (mDIA1) (p140mDIA)
          Length = 1255

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +1

Query: 145 PPGAPALSVGGIFPPLDPCPGGPRSCQRDPVSPSRAAGSLCDPPLRL 285
           PP  P    GG+ PP  P P  P +C   P  P    G+   PP +L
Sbjct: 587 PPPPPPPLPGGVVPPSPPLP--PGTC--IPPPPPLPGGACIPPPPQL 629

to top

>AT12A_RABIT (Q9TV52) Potassium-transporting ATPase alpha chain 2 (EC 3.6.3.10)|
           (Proton pump) (Non-gastric H(+)/K(+) ATPase alpha
           subunit) (HK alpha 2)
          Length = 1094

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 15/30 (50%), Positives = 15/30 (50%)
 Frame = +1

Query: 187 PLDPCPGGPRSCQRDPVSPSRAAGSLCDPP 276
           P  P P GPR C   PV    AA SLC  P
Sbjct: 26  PHSPSPPGPRGC---PVPLKAAAQSLCRKP 52


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,180,614
Number of Sequences: 219361
Number of extensions: 1187114
Number of successful extensions: 6873
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 5433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6831
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result