>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                            
Query: 359      tcgccgtacgtgctgtcgttcctgctgctgctctccatcccggcggtctacttnctcgcg 418
                |||||||||||||||||| | |||||||||||||||||||||||||| | | | ||||||
Sbjct: 26398661 tcgccgtacgtgctgtcgctgctgctgctgctctccatcccggcggtgttcctcctcgcg 26398602

                        
Query: 419      ccgcgcct 426
                ||||||||
Sbjct: 26398601 ccgcgcct 26398594

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                            
Query: 359      tcgccgtacgtgctgtcgttcctgctgctgctctccatcccggcggtctacttnctcgcg 418
                |||||||||||||||||| | |||||||||||||||||||||||||| | | | ||||||
Sbjct: 26326830 tcgccgtacgtgctgtcgctgctgctgctgctctccatcccggcggtgttcctcctcgcg 26326771

                        
Query: 419      ccgcgcct 426
                ||||||||
Sbjct: 26326770 ccgcgcct 26326763

>emb|AL845347.4|CNS08CB9 Oryza sativa chromosome 12, . BAC OSJNBb0101I10 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 131689

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                          
Query: 359    tcgccgtacgtgctgtcgttcctgctgctgctctccatcccggcggtctacttnctcgcg 418
              |||||||||||||||||| | |||||||||||||||||||||||||| | | | ||||||
Sbjct: 112934 tcgccgtacgtgctgtcgctgctgctgctgctctccatcccggcggtgttcctcctcgcg 112875

                      
Query: 419    ccgcgcct 426
              ||||||||
Sbjct: 112874 ccgcgcct 112867

>emb|AL732532.4|CNS08C97 Oryza sativa chromosome 12, . BAC OSJNBa0027I07 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 146366

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                          
Query: 359    tcgccgtacgtgctgtcgttcctgctgctgctctccatcccggcggtctacttnctcgcg 418
              |||||||||||||||||| | |||||||||||||||||||||||||| | | | ||||||
Sbjct: 143415 tcgccgtacgtgctgtcgctgctgctgctgctctccatcccggcggtgttcctcctcgcg 143474

                      
Query: 419    ccgcgcct 426
              ||||||||
Sbjct: 143475 ccgcgcct 143482

>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13
             map near C50029S, complete sequence
          Length = 129900

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 62/76 (81%)
 Strand = Plus / Minus

                                                                         
Query: 351   cgtacgcgtcgccgtacgtgctgtcgttcctgctgctgctctccatcccggcggtctact 410
             ||||||| ||||||| |||||||||| | || || ||  ||||||||||||   ||| | 
Sbjct: 52640 cgtacgcctcgccgttcgtgctgtcggtgctcctcctcgtctccatcccggtcatcttcc 52581

                             
Query: 411   tnctcgcgccgcgcct 426
             | ||||||||||||||
Sbjct: 52580 tcctcgcgccgcgcct 52565

>ref|XM_418515.1| PREDICTED: Gallus gallus similar to cell cycle progression 2
           protein (LOC420408), mRNA
          Length = 2555

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 379 cctgctgctgctctccatccc 399
           |||||||||||||||||||||
Sbjct: 547 cctgctgctgctctccatccc 527

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 62/76 (81%)
 Strand = Plus / Minus

                                                                            
Query: 351      cgtacgcgtcgccgtacgtgctgtcgttcctgctgctgctctccatcccggcggtctact 410
                ||||||| ||||||| |||||||||| | || || ||  ||||||||||||   ||| | 
Sbjct: 24817405 cgtacgcctcgccgttcgtgctgtcggtgctcctcctcgtctccatcccggtcatcttcc 24817346

                                
Query: 411      tnctcgcgccgcgcct 426
                | ||||||||||||||
Sbjct: 24817345 tcctcgcgccgcgcct 24817330

>emb|AL353752.6| Human DNA sequence from clone RP11-497K15 on chromosome 9 Contains a
             NADH dehydrogenase (ubiquinone) 1 alpha (MLRQ) (NDUFA4)
             pseudogene, complete sequence
          Length = 177921

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 98    ctcctccccgtccttcttcccctcc 122
             ||||||||| |||||||||||||||
Sbjct: 52197 ctcctccccctccttcttcccctcc 52173

>emb|X78119.1|PABTPRU1 P.amygdalus, Batsch (Texas) pru1 mRNA
          Length = 1905

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 372 tgtcgttcctgctgctgctct 392
           |||||||||||||||||||||
Sbjct: 500 tgtcgttcctgctgctgctct 480

>emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0116P11 of library OSJNBb from
              chromosome 3 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 128559

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 62/76 (81%)
 Strand = Plus / Minus

                                                                          
Query: 351    cgtacgcgtcgccgtacgtgctgtcgttcctgctgctgctctccatcccggcggtctact 410
              ||||||| ||||||| |||||||||| | || || ||  ||||||||||||   ||| | 
Sbjct: 104356 cgtacgcctcgccgttcgtgctgtcggtgctcctcctcgtctccatcccggtcatcttcc 104297

                              
Query: 411    tnctcgcgccgcgcct 426
              | ||||||||||||||
Sbjct: 104296 tcctcgcgccgcgcct 104281

>gb|AC149085.6| Mus musculus BAC clone RP23-191I16 from chromosome 7, complete sequence
          Length = 208232

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 98    ctcctccccgtccttcttcccctcc 122
             ||||||||| |||||||||||||||
Sbjct: 41767 ctcctccccttccttcttcccctcc 41743

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 62/76 (81%)
 Strand = Plus / Minus

                                                                            
Query: 351      cgtacgcgtcgccgtacgtgctgtcgttcctgctgctgctctccatcccggcggtctact 410
                ||||||| ||||||| |||||||||| | || || ||  ||||||||||||   ||| | 
Sbjct: 24908728 cgtacgcctcgccgttcgtgctgtcggtgctcctcctcgtctccatcccggtcatcttcc 24908669

                                
Query: 411      tnctcgcgccgcgcct 426
                | ||||||||||||||
Sbjct: 24908668 tcctcgcgccgcgcct 24908653

>dbj|AK109329.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-B01, full
           insert sequence
          Length = 1556

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 62/76 (81%)
 Strand = Plus / Plus

                                                                       
Query: 351 cgtacgcgtcgccgtacgtgctgtcgttcctgctgctgctctccatcccggcggtctact 410
           ||||||| ||||||| |||||||||| | || || ||  ||||||||||||   ||| | 
Sbjct: 241 cgtacgcctcgccgttcgtgctgtcggtgctcctcctcgtctccatcccggtcatcttcc 300

                           
Query: 411 tnctcgcgccgcgcct 426
           | ||||||||||||||
Sbjct: 301 tcctcgcgccgcgcct 316

>gb|AC149282.2| Mus musculus BAC clone RP23-236D19 from 7, complete sequence
          Length = 221553

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 98     ctcctccccgtccttcttcccctcc 122
              ||||||||| |||||||||||||||
Sbjct: 189558 ctcctccccttccttcttcccctcc 189534

>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 378    tcctgctgctgctctccatc 397
              ||||||||||||||||||||
Sbjct: 304861 tcctgctgctgctctccatc 304842

>ref|NM_172225.1| Homo sapiens diencephalon/mesencephalon homeobox 1 (DMBX1),
            transcript variant 1, mRNA
          Length = 2881

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 379  cctgctgctgctctccatcc 398
            ||||||||||||||||||||
Sbjct: 2288 cctgctgctgctctccatcc 2269

>ref|NM_147192.2| Homo sapiens diencephalon/mesencephalon homeobox 1 (DMBX1),
            transcript variant 2, mRNA
          Length = 2896

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 379  cctgctgctgctctccatcc 398
            ||||||||||||||||||||
Sbjct: 2303 cctgctgctgctctccatcc 2284

>gb|AC153597.13| Mus musculus 6 BAC RP23-18K9 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 197694

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 380   ctgctgctgctctccatccc 399
             ||||||||||||||||||||
Sbjct: 75602 ctgctgctgctctccatccc 75621

>ref|XM_973057.1| PREDICTED: Mus musculus hypothetical protein LOC669103 (LOC669103),
           mRNA
          Length = 471

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 371 ctgtcgttcctgctgctgct 390
           ||||||||||||||||||||
Sbjct: 81  ctgtcgttcctgctgctgct 62

>ref|XM_973504.1| PREDICTED: Mus musculus hypothetical protein LOC664943 (LOC664943),
           mRNA
          Length = 471

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 371 ctgtcgttcctgctgctgct 390
           ||||||||||||||||||||
Sbjct: 81  ctgtcgttcctgctgctgct 62

>ref|XM_975074.1| PREDICTED: Mus musculus hypothetical protein LOC674490 (LOC674490),
           mRNA
          Length = 471

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 371 ctgtcgttcctgctgctgct 390
           ||||||||||||||||||||
Sbjct: 81  ctgtcgttcctgctgctgct 62

>gb|AC132685.3| Mus musculus BAC clone RP23-278G24 from chromosome 7, complete sequence
          Length = 188989

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 371    ctgtcgttcctgctgctgct 390
              ||||||||||||||||||||
Sbjct: 185302 ctgtcgttcctgctgctgct 185321

>emb|AL158091.31| Human DNA sequence from clone RP5-824A14 on chromosome 20 Contains the
             5' end of the BTBD4 gene for BTB (POZ) domain containing
             4, part of a gene for a tissue plasminogen activator
             protein and two CpG islands, complete sequence
          Length = 41932

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 380   ctgctgctgctctccatccc 399
             ||||||||||||||||||||
Sbjct: 15950 ctgctgctgctctccatccc 15931

>emb|AL137797.9| Human DNA sequence from clone RP5-1109J22 on chromosome 1 Contains
             three novel genes, the OTX3 gene for orthodenticle homolog
             3 (Drosophila) and a CpG island, complete sequence
          Length = 105345

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 379   cctgctgctgctctccatcc 398
             ||||||||||||||||||||
Sbjct: 15561 cctgctgctgctctccatcc 15580

>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 23      ccgcatccgtcccgccagaaccgc 46
               |||||||||||| |||||||||||
Sbjct: 3721325 ccgcatccgtccggccagaaccgc 3721302

>dbj|AK013560.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length
           enriched library, clone:2900019J01 product:hypothetical
           Serine-rich region profile containing protein, full
           insert sequence
          Length = 987

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 371 ctgtcgttcctgctgctgct 390
           ||||||||||||||||||||
Sbjct: 270 ctgtcgttcctgctgctgct 251

>emb|AL929105.27| Zebrafish DNA sequence from clone CH211-142D6 in linkage group 7,
              complete sequence
          Length = 176147

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     gagcaccaccagcagcagat 78
              ||||||||||||||||||||
Sbjct: 155715 gagcaccaccagcagcagat 155734

>gb|AC127223.5| Mus musculus BAC clone RP24-484M18 from chromosome 7, complete sequence
          Length = 168323

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 371   ctgtcgttcctgctgctgct 390
             ||||||||||||||||||||
Sbjct: 34688 ctgtcgttcctgctgctgct 34707

>dbj|AP008227.1| Thermus thermophilus HB8 plasmid pTT27 DNA, complete sequence
          Length = 256992

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 98     ctcctccccgtccttcttcc 117
              ||||||||||||||||||||
Sbjct: 199288 ctcctccccgtccttcttcc 199269

>ref|XM_556443.1| Anopheles gambiae str. PEST ENSANGP00000029235
           (ENSANGG00000022103), partial mRNA
          Length = 717

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 361 gccgtacgtgctgtcgttcctgct 384
           ||||||||||||| ||||||||||
Sbjct: 220 gccgtacgtgctgccgttcctgct 243

>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 381   tgctgctgctctccatcccggcgg 404
             |||||||||||| |||||||||||
Sbjct: 65291 tgctgctgctctacatcccggcgg 65314

>dbj|AB037699.1| Homo sapiens hPaxB mRNA, partial cds
          Length = 2881

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 379  cctgctgctgctctccatcc 398
            ||||||||||||||||||||
Sbjct: 2288 cctgctgctgctctccatcc 2269


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,121,601
Number of Sequences: 3902068
Number of extensions: 3121601
Number of successful extensions: 67870
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 67633
Number of HSP's gapped (non-prelim): 238
length of query: 432
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 410
effective length of database: 17,147,199,772
effective search space: 7030351906520
effective search space used: 7030351906520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)