ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast55h04 |
|---|---|
| Clone Library Name | barley_pub |
>G156_PARPR (P13837) G surface protein, allelic form 156 precursor| Length = 2715 Score = 31.6 bits (70), Expect = 0.83 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 8/53 (15%) Frame = +3 Query: 279 ALAAMEKCAWKDAIC----PVCIECPH----GAVLLLCSSHDKGCRPYVCGTS 413 A A +KCAW A C V EC + G L+C++++ C GT+ Sbjct: 1190 AAATADKCAWSGAACLAVTTVATECAYVTGTGLTDLICAAYNANCTANKAGTA 1242 Score = 30.4 bits (67), Expect = 1.9 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 8/45 (17%) Frame = +3 Query: 279 ALAAMEKCAWKDAIC----PVCIECPH----GAVLLLCSSHDKGC 389 A A +KCAW A C V EC + G +C++++ GC Sbjct: 1412 AAATADKCAWSGAACLAVTTVATECAYVTGTGLTKAICATYNAGC 1456 Score = 30.0 bits (66), Expect = 2.4 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 8/53 (15%) Frame = +3 Query: 279 ALAAMEKCAWKDAIC----PVCIECPH----GAVLLLCSSHDKGCRPYVCGTS 413 A A +KCAW A C V EC + G +C++++ C GT+ Sbjct: 1338 AAATADKCAWSGAACLAVTTVATECAYVTGTGLTNAICAAYNANCTANKAGTA 1390 Score = 30.0 bits (66), Expect = 2.4 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 8/53 (15%) Frame = +3 Query: 279 ALAAMEKCAWKDAIC----PVCIECPH----GAVLLLCSSHDKGCRPYVCGTS 413 A A +KCAW A C V EC + G +C++++ C GT+ Sbjct: 1264 AAATADKCAWSGAACLAVTTVATECAYVTGTGLTNAICAAYNANCTANKAGTA 1316 Score = 30.0 bits (66), Expect = 2.4 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 8/53 (15%) Frame = +3 Query: 279 ALAAMEKCAWKDAIC----PVCIECPH----GAVLLLCSSHDKGCRPYVCGTS 413 A A +KCAW C V CP+ G L+C++++ C GT+ Sbjct: 1116 AAATADKCAWSGTACLAVTTVGTHCPYVTGTGLTDLICAAYNANCTANKAGTA 1168
>BAZ2B_CHICK (Q9DE13) Bromodomain adjacent to zinc finger domain 2B (Extracellular| matrix protein F22) Length = 2130 Score = 30.8 bits (68), Expect = 1.4 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%) Frame = +3 Query: 303 AWKDAI----CPVCIECPHGAVLLLCSSHDKGCRPY 398 AW+ +I C +C + + +LLLC DKGC Y Sbjct: 1888 AWEKSIMKVYCQICRKGDNEELLLLCDGCDKGCHTY 1923
>BAZ2B_HUMAN (Q9UIF8) Bromodomain adjacent to zinc finger domain 2B (hWALp4)| Length = 1972 Score = 30.8 bits (68), Expect = 1.4 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%) Frame = +3 Query: 303 AWKDAI----CPVCIECPHGAVLLLCSSHDKGCRPY 398 AW+ +I C +C + + +LLLC DKGC Y Sbjct: 1728 AWEKSIMKVYCQICRKGDNEELLLLCDGCDKGCHTY 1763
>YEU6_YEAST (P40072) Hypothetical 30.8 kDa protein in SPR6-RPL23B intergenic| region Length = 274 Score = 29.6 bits (65), Expect = 3.2 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = +3 Query: 270 QEPALAAMEKCAWKDAICPVCIECPHGAVLLLC 368 +E A E A KD CP+C E P A++ LC Sbjct: 189 EETKEAPKEYGAAKDYRCPICFEPPETALMTLC 221
>BRU1_ARATH (Q6Q4D0) Protein BRUSHY 1 (Protein TONSOKU) (Protein MGOUN 3)| Length = 1311 Score = 28.5 bits (62), Expect = 7.1 Identities = 9/18 (50%), Positives = 15/18 (83%) Frame = -3 Query: 405 HIHMDDSLCHEMNRVEGQ 352 HI MD ++CH++N V+G+ Sbjct: 229 HIEMDINICHKINHVQGE 246
>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2| (ALL1-related protein) Length = 5262 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = +3 Query: 264 ATQEPALAAMEKCAWKDAICPVCIEC---PHGAVLLLCSSHDKG 386 A + AL A ++ W+ C VC C + + +L+C + DKG Sbjct: 254 ACLDTALTARKRAGWQCPECKVCQACRKPGNDSKMLVCETCDKG 297
>V1AR_MICOH (Q9WTV9) Vasopressin V1a receptor (V1aR) (Vascular/hepatic-type| arginine vasopressin receptor) (Antidiuretic hormone receptor 1a) (AVPR V1a) Length = 420 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +1 Query: 292 WRNVHGKTRSAQFASNAHMVLSFYSVHLMTKAV 390 WRNV GKT S Q + V F+ L+T V Sbjct: 246 WRNVRGKTASRQSKGSGEDVAPFHKGLLVTPCV 278
>V1AR_MICMA (Q9WTV8) Vasopressin V1a receptor (V1aR) (Vascular/hepatic-type| arginine vasopressin receptor) (Antidiuretic hormone receptor 1a) (AVPR V1a) Length = 420 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +1 Query: 292 WRNVHGKTRSAQFASNAHMVLSFYSVHLMTKAV 390 WRNV GKT S Q + V F+ L+T V Sbjct: 246 WRNVRGKTASRQSKGSGEDVAPFHKGLLVTPCV 278
>HTS1_COCCA (Q01886) HC-toxin synthetase (EC 6.3.2.-) (HTS)| Length = 5218 Score = 28.1 bits (61), Expect = 9.2 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Frame = -2 Query: 421 WRKLVPHTYGRQPLS*DEQSRR--TAPCGHSMQTGQIASFHAHFSIAANAGSWVATLLKL 248 WRKL+ + D++S R P GH T +FH FS+ + G+ T + Sbjct: 2708 WRKLL--------VKPDQESFRFPDVPVGHKPATRCTTNFHFPFSMQSKIGTTANTCINA 2759 Query: 247 QW 242 W Sbjct: 2760 AW 2761
>SRFAA_BACSU (P27206) Surfactin synthetase subunit 1| Length = 3588 Score = 28.1 bits (61), Expect = 9.2 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Frame = +1 Query: 310 KTRSAQFASNAHMVLSF-YSVHLMTKAVVHMYVELVSSTQ 426 K F +N H V+S S++++ A++H+Y+EL S ++ Sbjct: 128 KENEVWFYANVHHVISDGMSMNIVGNAIMHIYLELASGSE 167
>GCR2_YEAST (Q01722) Glycolytic genes transcriptional activator GCR2| Length = 534 Score = 28.1 bits (61), Expect = 9.2 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%) Frame = +3 Query: 138 SENRGTGVFKMAKNSRNMKYSSREVRSTRYLRPFSHCSFKRVATQ---EPALA 287 ++ RGT V K AKN +N K S++E FS+ + T +P+L+ Sbjct: 285 TKKRGTRVAKNAKNGKNNKNSNKERNGITDTSAFSNTTISNPGTNMLFDPSLS 337 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,620,210 Number of Sequences: 219361 Number of extensions: 961656 Number of successful extensions: 2264 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2170 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2261 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
