ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast55h04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
2dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
3dbj|AP005559.3| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
4dbj|AK109302.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 2e-21
5ref|NM_001036173.1| Arabidopsis thaliana unknown protein AT1G681... 62 2e-06
6ref|NM_105484.3| Arabidopsis thaliana unknown protein AT1G68140 ... 62 2e-06
7gb|AY093375.1| Arabidopsis thaliana unknown protein (At1g68140) ... 62 2e-06
8gb|AY062576.1| Arabidopsis thaliana Unknown protein (At1g68140; ... 62 2e-06
9gb|AC012563.7|AC012563 Arabidopsis thaliana chromosome 1 BAC T23... 62 2e-06
10emb|BX813707.1|CNS0ADO0 Arabidopsis thaliana Full-length cDNA Co... 62 2e-06
11emb|BX815191.1|CNS0AD01 Arabidopsis thaliana Full-length cDNA Co... 62 2e-06
12emb|BX815717.1|CNS0ACW9 Arabidopsis thaliana Full-length cDNA Co... 62 2e-06
13emb|BX818045.1|CNS0ACKE Arabidopsis thaliana Full-length cDNA Co... 62 2e-06
14gb|AC016447.5|AC016447 Arabidopsis thaliana chromosome 1 BAC T22... 62 2e-06
15gb|AY112616.1| Zea mays CL3480_-2 mRNA sequence 56 1e-04
16gb|BT017124.1| Zea mays clone EL01N0364H02.c mRNA sequence 54 4e-04
17emb|CT030348.1| Xenopus tropicalis finished cDNA, clone TGas048k11 42 1.5
18gb|AC156998.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
19ref|XM_598276.2| PREDICTED: Bos taurus similar to DEAH (Asp-Glu-... 40 5.7
20gb|AC113998.5| Mus musculus BAC clone RP23-137C20 from 13, compl... 40 5.7
21gb|AC102248.19| Mus musculus chromosome 18, clone RP24-158I9, co... 40 5.7
22emb|AL844525.1| Human DNA sequence from clone RP11-158M19 on chr... 40 5.7
23emb|BX510942.5| Zebrafish DNA sequence from clone CH211-246H5, c... 40 5.7
24dbj|AK029970.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 5.7
25ref|NM_177812.2| Mus musculus RIKEN cDNA 4932411K12 gene (493241... 40 5.7
26gb|AY705657.1| Oikopleura dioica homeodomain protein Not-a (Not-... 40 5.7
27gb|AC168881.3| Mus musculus BAC clone RP23-170A19 from chromosom... 40 5.7 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  111 bits (56), Expect = 2e-21
 Identities = 98/112 (87%)
 Strand = Plus / Minus

                                                                            
Query: 294      gagaaatgtgcatggaaagacgcgatctgcccagtttgcatcgaatgcccacatggtgct 353
                ||||||||||| ||||||||  | ||||| ||||||||| | ||||||||||||  ||||
Sbjct: 16891420 gagaaatgtgcgtggaaagattcaatctgtccagtttgcttggaatgcccacataatgct 16891361

                                                                    
Query: 354      gtccttctactctgttcatctcatgacaaaggctgtcgtccatatgtatgtg 405
                ||||||||||| ||||| |||||||| ||||| |||||||||||| ||||||
Sbjct: 16891360 gtccttctactttgttcgtctcatgataaaggttgtcgtccatatatatgtg 16891309
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>dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0488D02
          Length = 154537

 Score =  111 bits (56), Expect = 2e-21
 Identities = 98/112 (87%)
 Strand = Plus / Minus

                                                                         
Query: 294   gagaaatgtgcatggaaagacgcgatctgcccagtttgcatcgaatgcccacatggtgct 353
             ||||||||||| ||||||||  | ||||| ||||||||| | ||||||||||||  ||||
Sbjct: 21233 gagaaatgtgcgtggaaagattcaatctgtccagtttgcttggaatgcccacataatgct 21174

                                                                 
Query: 354   gtccttctactctgttcatctcatgacaaaggctgtcgtccatatgtatgtg 405
             ||||||||||| ||||| |||||||| ||||| |||||||||||| ||||||
Sbjct: 21173 gtccttctactttgttcgtctcatgataaaggttgtcgtccatatatatgtg 21122
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>dbj|AP005559.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1163_C07
          Length = 107121

 Score =  111 bits (56), Expect = 2e-21
 Identities = 98/112 (87%)
 Strand = Plus / Minus

                                                                         
Query: 294   gagaaatgtgcatggaaagacgcgatctgcccagtttgcatcgaatgcccacatggtgct 353
             ||||||||||| ||||||||  | ||||| ||||||||| | ||||||||||||  ||||
Sbjct: 89111 gagaaatgtgcgtggaaagattcaatctgtccagtttgcttggaatgcccacataatgct 89052

                                                                 
Query: 354   gtccttctactctgttcatctcatgacaaaggctgtcgtccatatgtatgtg 405
             ||||||||||| ||||| |||||||| ||||| |||||||||||| ||||||
Sbjct: 89051 gtccttctactttgttcgtctcatgataaaggttgtcgtccatatatatgtg 89000
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>dbj|AK109302.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-E01, full
           insert sequence
          Length = 1189

 Score =  111 bits (56), Expect = 2e-21
 Identities = 98/112 (87%)
 Strand = Plus / Plus

                                                                       
Query: 294 gagaaatgtgcatggaaagacgcgatctgcccagtttgcatcgaatgcccacatggtgct 353
           ||||||||||| ||||||||  | ||||| ||||||||| | ||||||||||||  ||||
Sbjct: 249 gagaaatgtgcgtggaaagattcaatctgtccagtttgcttggaatgcccacataatgct 308

                                                               
Query: 354 gtccttctactctgttcatctcatgacaaaggctgtcgtccatatgtatgtg 405
           ||||||||||| ||||| |||||||| ||||| |||||||||||| ||||||
Sbjct: 309 gtccttctactttgttcgtctcatgataaaggttgtcgtccatatatatgtg 360
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>ref|NM_001036173.1| Arabidopsis thaliana unknown protein AT1G68140 transcript variant
           AT1G68140.2 mRNA, complete cds
          Length = 1571

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                       
Query: 351 gctgtccttctactctgttcatctcatgacaaaggctgtcgtccatatgtatgtggaact 410
           ||||||||||| ||||| |||||||||||||| || |||||||| ||  | |||||||| 
Sbjct: 414 gctgtccttcttctctgctcatctcatgacaagggatgtcgtccttacatgtgtggaacc 473

                  
Query: 411 agtttcc 417
           |||||||
Sbjct: 474 agtttcc 480
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>ref|NM_105484.3| Arabidopsis thaliana unknown protein AT1G68140 transcript variant
           AT1G68140.1 mRNA, complete cds
          Length = 1649

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                       
Query: 351 gctgtccttctactctgttcatctcatgacaaaggctgtcgtccatatgtatgtggaact 410
           ||||||||||| ||||| |||||||||||||| || |||||||| ||  | |||||||| 
Sbjct: 414 gctgtccttcttctctgctcatctcatgacaagggatgtcgtccttacatgtgtggaacc 473

                  
Query: 411 agtttcc 417
           |||||||
Sbjct: 474 agtttcc 480
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>gb|AY093375.1| Arabidopsis thaliana unknown protein (At1g68140) mRNA, complete cds
          Length = 1053

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                       
Query: 351 gctgtccttctactctgttcatctcatgacaaaggctgtcgtccatatgtatgtggaact 410
           ||||||||||| ||||| |||||||||||||| || |||||||| ||  | |||||||| 
Sbjct: 193 gctgtccttcttctctgctcatctcatgacaagggatgtcgtccttacatgtgtggaacc 252

                  
Query: 411 agtttcc 417
           |||||||
Sbjct: 253 agtttcc 259
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>gb|AY062576.1| Arabidopsis thaliana Unknown protein (At1g68140; T23K23.1) mRNA,
           complete cds
          Length = 1521

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                       
Query: 351 gctgtccttctactctgttcatctcatgacaaaggctgtcgtccatatgtatgtggaact 410
           ||||||||||| ||||| |||||||||||||| || |||||||| ||  | |||||||| 
Sbjct: 413 gctgtccttcttctctgctcatctcatgacaagggatgtcgtccttacatgtgtggaacc 472

                  
Query: 411 agtttcc 417
           |||||||
Sbjct: 473 agtttcc 479
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>gb|AC012563.7|AC012563 Arabidopsis thaliana chromosome 1 BAC T23K23 genomic sequence,
            complete sequence
          Length = 101966

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                        
Query: 351  gctgtccttctactctgttcatctcatgacaaaggctgtcgtccatatgtatgtggaact 410
            ||||||||||| ||||| |||||||||||||| || |||||||| ||  | |||||||| 
Sbjct: 4168 gctgtccttcttctctgctcatctcatgacaagggatgtcgtccttacatgtgtggaacc 4227

                   
Query: 411  agtttcc 417
            |||||||
Sbjct: 4228 agtttcc 4234
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>emb|BX813707.1|CNS0ADO0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB35ZC11 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1292

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                       
Query: 351 gctgtccttctactctgttcatctcatgacaaaggctgtcgtccatatgtatgtggaact 410
           ||||||||||| ||||| |||||||||||||| || |||||||| ||  | |||||||| 
Sbjct: 375 gctgtccttcttctctgctcatctcatgacaagggatgtcgtccttacatgtgtggaacc 434

                  
Query: 411 agtttcc 417
           |||||||
Sbjct: 435 agtttcc 441
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>emb|BX815191.1|CNS0AD01 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS40ZC05 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1460

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                       
Query: 351 gctgtccttctactctgttcatctcatgacaaaggctgtcgtccatatgtatgtggaact 410
           ||||||||||| ||||| |||||||||||||| || |||||||| ||  | |||||||| 
Sbjct: 386 gctgtccttcttctctgctcatctcatgacaagggatgtcgtccttacatgtgtggaacc 445

                  
Query: 411 agtttcc 417
           |||||||
Sbjct: 446 agtttcc 452
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>emb|BX815717.1|CNS0ACW9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS87ZD08 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1304

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                       
Query: 351 gctgtccttctactctgttcatctcatgacaaaggctgtcgtccatatgtatgtggaact 410
           ||||||||||| ||||| |||||||||||||| || |||||||| ||  | |||||||| 
Sbjct: 353 gctgtccttcttctctgctcatctcatgacaagggatgtcgtccttacatgtgtggaacc 412

                  
Query: 411 agtttcc 417
           |||||||
Sbjct: 413 agtttcc 419
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>emb|BX818045.1|CNS0ACKE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL58ZE07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1432

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                       
Query: 351 gctgtccttctactctgttcatctcatgacaaaggctgtcgtccatatgtatgtggaact 410
           ||||||||||| ||||| |||||||||||||| || |||||||| ||  | |||||||| 
Sbjct: 343 gctgtccttcttctctgctcatctcatgacaagggatgtcgtccttacatgtgtggaacc 402

                  
Query: 411 agtttcc 417
           |||||||
Sbjct: 403 agtttcc 409
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>gb|AC016447.5|AC016447 Arabidopsis thaliana chromosome 1 BAC T22E19 genomic sequence, complete
              sequence
          Length = 107816

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                          
Query: 351    gctgtccttctactctgttcatctcatgacaaaggctgtcgtccatatgtatgtggaact 410
              ||||||||||| ||||| |||||||||||||| || |||||||| ||  | |||||||| 
Sbjct: 103643 gctgtccttcttctctgctcatctcatgacaagggatgtcgtccttacatgtgtggaacc 103702

                     
Query: 411    agtttcc 417
              |||||||
Sbjct: 103703 agtttcc 103709
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>gb|AY112616.1| Zea mays CL3480_-2 mRNA sequence
          Length = 494

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 88/108 (81%)
 Strand = Plus / Plus

                                                                       
Query: 280 cattagcagcgatggagaaatgtgcatggaaagacgcgatctgcccagtttgcatcgaat 339
           |||| |||||||| ||||||| |||||||| ||| || |  || ||||| ||||| ||||
Sbjct: 149 catttgcagcgatagagaaatatgcatggacagaggcaacttgtccagtatgcatggaat 208

                                                           
Query: 340 gcccacatggtgctgtccttctactctgttcatctcatgacaaaggct 387
            ||||||    ||||| ||||||||||||||||| |||| ||| ||||
Sbjct: 209 tcccacacaacgctgttcttctactctgttcatcacatggcaatggct 256
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>gb|BT017124.1| Zea mays clone EL01N0364H02.c mRNA sequence
          Length = 885

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                       
Query: 324 ccagtttgcatcgaatgcccacatggtgctgtccttctactctgttcatctcatgacaaa 383
           ||||| ||||| |||| ||||||  | ||||| |||||||||||||| || |||| ||| 
Sbjct: 45  ccagtatgcatggaattcccacacagcgctgttcttctactctgttcgtcacatggcaat 104

                          
Query: 384 ggctgtcgtccatat 398
           ||||| |||||||||
Sbjct: 105 ggctgccgtccatat 119
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>emb|CT030348.1| Xenopus tropicalis finished cDNA, clone TGas048k11
          Length = 2926

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 368  ttcatctcatgacaaaggctg 388
            |||||||||||||||||||||
Sbjct: 1188 ttcatctcatgacaaaggctg 1208
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>gb|AC156998.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0086B08, complete sequence
          Length = 148274

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 353   tgtccttctactctgttcatc 373
             |||||||||||||||||||||
Sbjct: 31527 tgtccttctactctgttcatc 31507
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>ref|XM_598276.2| PREDICTED: Bos taurus similar to DEAH (Asp-Glu-Ala-His) box
           polypeptide 38 (LOC520046), mRNA
          Length = 4289

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 39  tctcggcctctcgctcaggg 58
           ||||||||||||||||||||
Sbjct: 199 tctcggcctctcgctcaggg 218
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>gb|AC113998.5| Mus musculus BAC clone RP23-137C20 from 13, complete sequence
          Length = 194221

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 236    gttcagccattgtagtttca 255
              ||||||||||||||||||||
Sbjct: 133656 gttcagccattgtagtttca 133675
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>gb|AC102248.19| Mus musculus chromosome 18, clone RP24-158I9, complete sequence
          Length = 206000

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 346   atggtgctgtccttctactctgtt 369
             ||||||||||||||||||| ||||
Sbjct: 83505 atggtgctgtccttctactgtgtt 83528
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>emb|AL844525.1| Human DNA sequence from clone RP11-158M19 on chromosome X, complete
             sequence
          Length = 114428

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   tcttcaagatggccaaaaat 179
             ||||||||||||||||||||
Sbjct: 44310 tcttcaagatggccaaaaat 44291
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>emb|BX510942.5| Zebrafish DNA sequence from clone CH211-246H5, complete sequence
          Length = 26202

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 304   catggaaagacgcgatctgcccagtttg 331
             ||||||||||| ||||| ||||||||||
Sbjct: 18026 catggaaagactcgatcggcccagtttg 17999
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>dbj|AK029970.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4932411K12 product:hypothetical protein,
            full insert sequence
          Length = 3156

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 236  gttcagccattgtagtttca 255
            ||||||||||||||||||||
Sbjct: 2709 gttcagccattgtagtttca 2728
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>ref|NM_177812.2| Mus musculus RIKEN cDNA 4932411K12 gene (4932411K12Rik), mRNA
          Length = 3156

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 236  gttcagccattgtagtttca 255
            ||||||||||||||||||||
Sbjct: 2709 gttcagccattgtagtttca 2728
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>gb|AY705657.1| Oikopleura dioica homeodomain protein Not-a (Not-a) gene, partial cds
          Length = 2308

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 31   gaccgaattctcggcctctc 50
            ||||||||||||||||||||
Sbjct: 2006 gaccgaattctcggcctctc 2025
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>gb|AC168881.3| Mus musculus BAC clone RP23-170A19 from chromosome 13, complete
            sequence
          Length = 212206

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 236  gttcagccattgtagtttca 255
            ||||||||||||||||||||
Sbjct: 5481 gttcagccattgtagtttca 5462


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,729,904
Number of Sequences: 3902068
Number of extensions: 2729904
Number of successful extensions: 44278
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44214
Number of HSP's gapped (non-prelim): 64
length of query: 428
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 406
effective length of database: 17,147,199,772
effective search space: 6961763107432
effective search space used: 6961763107432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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