ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast55h03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_549950.1| Oryza sativa (japonica cultivar-group), mRNA 149 1e-32
2dbj|AK109436.2| Oryza sativa (japonica cultivar-group) cDNA clon... 149 1e-32
3dbj|AK104753.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 1e-32
4dbj|AK067022.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 1e-32
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 100 8e-18
6dbj|AP002868.1| Oryza sativa (japonica cultivar-group) genomic D... 100 8e-18
7dbj|AP002487.1| Oryza sativa (japonica cultivar-group) genomic D... 100 8e-18
8gb|AE005112.1| Halobacterium sp. NRC-1 section 143 of 170 of the... 62 2e-06
9ref|XM_418135.1| PREDICTED: Gallus gallus similar to Hypothetica... 48 0.026
10gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 44 0.40
11emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 44 0.40
12gb|DQ061984.1| Burkholderia mallei strain ATCC 23344 DnaK (dnaK)... 44 0.40
13gb|AC147992.3| Mus musculus BAC clone RP24-384K8 from chromosome... 42 1.6
14emb|AL662957.2|OSJN00157 Oryza sativa genomic DNA, chromosome 4,... 42 1.6
15dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 42 1.6
16gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 42 1.6
17dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
18emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 42 1.6
19ref|XM_466757.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.3
20ref|XM_463276.1| Oryza sativa (japonica cultivar-group), predic... 40 6.3
21gb|AY550262.1| Cricetulus griseus heterochromatin protein 1 alph... 40 6.3
22gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 6.3
23gb|AC130729.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
24ref|XM_879234.1| PREDICTED: Bos taurus similar to sterol regulat... 40 6.3
25ref|NM_015432.2| Homo sapiens pleckstrin homology domain contain... 40 6.3
26ref|XM_446513.1| Candida glabrata CBS138, CAGL0G03443g partial mRNA 40 6.3
27gb|AC091624.3| Canis familiaris clone RP81-117B1, complete sequence 40 6.3
28emb|Z84488.1|HS93H18 Human DNA sequence from clone RP1-93H18 on ... 40 6.3
29emb|CR380953.1| Candida glabrata strain CBS138 chromosome G comp... 40 6.3
30emb|BX842572.1| Mycobacterium tuberculosis H37Rv complete genome... 40 6.3
31emb|BX248334.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 6.3
32gb|AF533768.1| Cercopithecine herpesvirus 1 strain E2490, comple... 40 6.3
33gb|BC083431.1| Danio rerio zgc:103575, mRNA (cDNA clone MGC:1035... 40 6.3
34ref|NM_001005979.1| Danio rerio zgc:103575 (zgc:103575), mRNA 40 6.3
35gb|DQ322650.2| Streptomyces sp. 44414 plasmid pRL2, complete seq... 40 6.3
36dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
37dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
38gb|AC040160.4|AC040160 Homo sapiens chromosome 16 clone CTC-277H... 40 6.3
39gb|AC114603.15| Mus musculus chromosome 1, clone RP23-355E19, co... 40 6.3
40dbj|AB197664.1| Homo sapiens prtphn1 mRNA for puratrophin-1 shor... 40 6.3
41dbj|AB197663.1| Homo sapiens prtphn1 mRNA for puratrophin-1, com... 40 6.3
42dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.3
43emb|BX323843.9| Zebrafish DNA sequence from clone CH211-10A23 in... 40 6.3
44gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.3
45dbj|AP003217.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
46dbj|AP003054.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
47dbj|AP005846.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
48gb|AY780151.1| Bertia moriformis RNA polymerase II subunit (RPB2... 40 6.3
49dbj|AK073118.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
50gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 6.3 
>ref|XM_549950.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1180

 Score =  149 bits (75), Expect = 1e-32
 Identities = 141/163 (86%)
 Strand = Plus / Plus

                                                                       
Query: 132 gggccccacgaggctggcctacttcgatgacatgtgggccctccgcgcccccgccgccgt 191
           ||||||||| | ||| || |||||||||||||||||||||||| || || ||||| ||||
Sbjct: 126 gggccccaccaagctcgcgtacttcgatgacatgtgggccctcagctccaccgccaccgt 185

                                                                       
Query: 192 cctctccgtccatcaggaggagggcggccggcgggcggtggtgctggacgccacgatctt 251
           | ||||| |||  ||||||||||| |||||||| |||||| || ||||| ||||  ||||
Sbjct: 186 cgtctccctcctccaggaggaggggggccggcgagcggtgttggtggactccaccgtctt 245

                                                      
Query: 252 ccacccgcagggcggcgggcagccggccgacacgggcgtcatc 294
           | |||||||||||||||| |||||||||||||| |||||||||
Sbjct: 246 ctacccgcagggcggcggccagccggccgacaccggcgtcatc 288



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 305 ccaggttcctcgtcgaggacgtgcgcgtcaaggacggggtggtcttccactatggcagat 364
           |||||||| ||||||| || |||||  | ||||| || ||||| ||||||||||| ||||
Sbjct: 305 ccaggttcatcgtcgatgatgtgcggatgaaggatggagtggttttccactatgggagat 364

                       
Query: 365 tcgaggacgctg 376
           | ||||| ||||
Sbjct: 365 ttgaggatgctg 376
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>dbj|AK109436.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-G11, full
           insert sequence
          Length = 1183

 Score =  149 bits (75), Expect = 1e-32
 Identities = 141/163 (86%)
 Strand = Plus / Plus

                                                                       
Query: 132 gggccccacgaggctggcctacttcgatgacatgtgggccctccgcgcccccgccgccgt 191
           ||||||||| | ||| || |||||||||||||||||||||||| || || ||||| ||||
Sbjct: 90  gggccccaccaagctcgcgtacttcgatgacatgtgggccctcagctccaccgccaccgt 149

                                                                       
Query: 192 cctctccgtccatcaggaggagggcggccggcgggcggtggtgctggacgccacgatctt 251
           | ||||| |||  ||||||||||| |||||||| |||||| || ||||| ||||  ||||
Sbjct: 150 cgtctccctcctccaggaggaggggggccggcgagcggtgttggtggactccaccgtctt 209

                                                      
Query: 252 ccacccgcagggcggcgggcagccggccgacacgggcgtcatc 294
           | |||||||||||||||| |||||||||||||| |||||||||
Sbjct: 210 ctacccgcagggcggcggccagccggccgacaccggcgtcatc 252



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 305 ccaggttcctcgtcgaggacgtgcgcgtcaaggacggggtggtcttccactatggcagat 364
           |||||||| ||||||| || |||||  | ||||| || ||||| ||||||||||| ||||
Sbjct: 269 ccaggttcatcgtcgatgatgtgcggatgaaggatggagtggttttccactatgggagat 328

                       
Query: 365 tcgaggacgctg 376
           | ||||| ||||
Sbjct: 329 ttgaggatgctg 340
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>dbj|AK104753.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-F08, full
           insert sequence
          Length = 1183

 Score =  149 bits (75), Expect = 1e-32
 Identities = 141/163 (86%)
 Strand = Plus / Plus

                                                                       
Query: 132 gggccccacgaggctggcctacttcgatgacatgtgggccctccgcgcccccgccgccgt 191
           ||||||||| | ||| || |||||||||||||||||||||||| || || ||||| ||||
Sbjct: 90  gggccccaccaagctcgcgtacttcgatgacatgtgggccctcagctccaccgccaccgt 149

                                                                       
Query: 192 cctctccgtccatcaggaggagggcggccggcgggcggtggtgctggacgccacgatctt 251
           | ||||| |||  ||||||||||| |||||||| |||||| || ||||| ||||  ||||
Sbjct: 150 cgtctccctcctccaggaggaggggggccggcgagcggtgttggtggactccaccgtctt 209

                                                      
Query: 252 ccacccgcagggcggcgggcagccggccgacacgggcgtcatc 294
           | |||||||||||||||| |||||||||||||| |||||||||
Sbjct: 210 ctacccgcagggcggcggccagccggccgacaccggcgtcatc 252



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 305 ccaggttcctcgtcgaggacgtgcgcgtcaaggacggggtggtcttccactatggcagat 364
           |||||||| ||||||| || |||||  | ||||| || ||||| ||||||||||| ||||
Sbjct: 269 ccaggttcatcgtcgatgatgtgcggatgaaggatggagtggttttccactatgggagat 328

                       
Query: 365 tcgaggacgctg 376
           | ||||| ||||
Sbjct: 329 ttgaggatgctg 340
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>dbj|AK067022.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013090K12, full
           insert sequence
          Length = 1179

 Score =  149 bits (75), Expect = 1e-32
 Identities = 141/163 (86%)
 Strand = Plus / Plus

                                                                       
Query: 132 gggccccacgaggctggcctacttcgatgacatgtgggccctccgcgcccccgccgccgt 191
           ||||||||| | ||| || |||||||||||||||||||||||| || || ||||| ||||
Sbjct: 125 gggccccaccaagctcgcgtacttcgatgacatgtgggccctcagctccaccgccaccgt 184

                                                                       
Query: 192 cctctccgtccatcaggaggagggcggccggcgggcggtggtgctggacgccacgatctt 251
           | ||||| |||  ||||||||||| |||||||| |||||| || ||||| ||||  ||||
Sbjct: 185 cgtctccctcctccaggaggaggggggccggcgagcggtgttggtggactccaccgtctt 244

                                                      
Query: 252 ccacccgcagggcggcgggcagccggccgacacgggcgtcatc 294
           | |||||||||||||||| |||||||||||||| |||||||||
Sbjct: 245 ctacccgcagggcggcggccagccggccgacaccggcgtcatc 287



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 305 ccaggttcctcgtcgaggacgtgcgcgtcaaggacggggtggtcttccactatggcagat 364
           |||||||| ||||||| || |||||  | ||||| || ||||| ||||||||||| ||||
Sbjct: 304 ccaggttcatcgtcgatgatgtgcggatgaaggatggagtggttttccactatgggagat 363

                       
Query: 365 tcgaggacgctg 376
           | ||||| ||||
Sbjct: 364 ttgaggatgctg 375
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 80/90 (88%)
 Strand = Plus / Minus

                                                                           
Query: 205     caggaggagggcggccggcgggcggtggtgctggacgccacgatcttccacccgcagggc 264
               ||||||||||| |||||||| |||||| || ||||| ||||  ||||| |||||||||||
Sbjct: 1157127 caggaggaggggggccggcgagcggtgttggtggactccaccgtcttctacccgcagggc 1157068

                                             
Query: 265     ggcgggcagccggccgacacgggcgtcatc 294
               ||||| |||||||||||||| |||||||||
Sbjct: 1157067 ggcggccagccggccgacaccggcgtcatc 1157038



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                           
Query: 132     gggccccacgaggctggcctacttcgatgacatgtgggccctccgcgcccccgccgccgt 191
               ||||||||| | ||| || |||||||||||||||||||||||| || || ||||| ||||
Sbjct: 1157322 gggccccaccaagctcgcgtacttcgatgacatgtgggccctcagctccaccgccaccgt 1157263

                      
Query: 192     cctctcc 198
               | |||||
Sbjct: 1157262 cgtctcc 1157256



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 171      cctccgcgcccccgccgccg 190
                ||||||||||||||||||||
Sbjct: 17622699 cctccgcgcccccgccgccg 17622680
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>dbj|AP002868.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0698A04
          Length = 141079

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 80/90 (88%)
 Strand = Plus / Minus

                                                                          
Query: 205    caggaggagggcggccggcgggcggtggtgctggacgccacgatcttccacccgcagggc 264
              ||||||||||| |||||||| |||||| || ||||| ||||  ||||| |||||||||||
Sbjct: 126441 caggaggaggggggccggcgagcggtgttggtggactccaccgtcttctacccgcagggc 126382

                                            
Query: 265    ggcgggcagccggccgacacgggcgtcatc 294
              ||||| |||||||||||||| |||||||||
Sbjct: 126381 ggcggccagccggccgacaccggcgtcatc 126352



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                          
Query: 132    gggccccacgaggctggcctacttcgatgacatgtgggccctccgcgcccccgccgccgt 191
              ||||||||| | ||| || |||||||||||||||||||||||| || || ||||| ||||
Sbjct: 126636 gggccccaccaagctcgcgtacttcgatgacatgtgggccctcagctccaccgccaccgt 126577

                     
Query: 192    cctctcc 198
              | |||||
Sbjct: 126576 cgtctcc 126570
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>dbj|AP002487.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0684C01
          Length = 78600

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 80/90 (88%)
 Strand = Plus / Minus

                                                                         
Query: 205   caggaggagggcggccggcgggcggtggtgctggacgccacgatcttccacccgcagggc 264
             ||||||||||| |||||||| |||||| || ||||| ||||  ||||| |||||||||||
Sbjct: 11430 caggaggaggggggccggcgagcggtgttggtggactccaccgtcttctacccgcagggc 11371

                                           
Query: 265   ggcgggcagccggccgacacgggcgtcatc 294
             ||||| |||||||||||||| |||||||||
Sbjct: 11370 ggcggccagccggccgacaccggcgtcatc 11341



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                         
Query: 132   gggccccacgaggctggcctacttcgatgacatgtgggccctccgcgcccccgccgccgt 191
             ||||||||| | ||| || |||||||||||||||||||||||| || || ||||| ||||
Sbjct: 11625 gggccccaccaagctcgcgtacttcgatgacatgtgggccctcagctccaccgccaccgt 11566

                    
Query: 192   cctctcc 198
             | |||||
Sbjct: 11565 cgtctcc 11559
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>gb|AE005112.1| Halobacterium sp. NRC-1 section 143 of 170 of the complete genome
          Length = 12204

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                           
Query: 244  acgatcttccacccgcagggcggcgggcagccggccgacacgggcgt 290
            ||||| ||| ||||| ||||||||||||||||||| |||||||||||
Sbjct: 9681 acgatgttctacccggagggcggcgggcagccggcggacacgggcgt 9727
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>ref|XM_418135.1| PREDICTED: Gallus gallus similar to Hypothetical protein MGC11770
           (LOC420014), mRNA
          Length = 1631

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                           
Query: 228 ggtggtgctggacgccacgatcttccacccgcagggcggcgggcagcc 275
           |||||||||||| | ||||||| ||| |||  ||||||||||||||||
Sbjct: 183 ggtggtgctggaggacacgatcctcctccccgagggcggcgggcagcc 230
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 257     cgcagggcggcgggcagccggccgac 282
               |||||||||||| |||||||||||||
Sbjct: 2422232 cgcagggcggcgcgcagccggccgac 2422207
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 257     cgcagggcggcgggcagccggccgac 282
               |||||||||||| |||||||||||||
Sbjct: 3380086 cgcagggcggcgcgcagccggccgac 3380061
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>gb|DQ061984.1| Burkholderia mallei strain ATCC 23344 DnaK (dnaK) gene, complete cds
          Length = 1953

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 257  cgcagggcggcgggcagccggccgac 282
            |||||||||||| |||||||||||||
Sbjct: 1886 cgcagggcggcgcgcagccggccgac 1911
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>gb|AC147992.3| Mus musculus BAC clone RP24-384K8 from chromosome 18, complete sequence
          Length = 239075

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 169   gccctccgcgcccccgccgcc 189
             |||||||||||||||||||||
Sbjct: 80242 gccctccgcgcccccgccgcc 80262
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>emb|AL662957.2|OSJN00157 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0013K16,
             complete sequence
          Length = 145739

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 158   atgacatgtgggccctccgcg 178
             |||||||||||||||||||||
Sbjct: 78020 atgacatgtgggccctccgcg 78000
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>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 200    tccatcaggaggagggcggcc 220
              |||||||||||||||||||||
Sbjct: 869657 tccatcaggaggagggcggcc 869637
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete
              genome
          Length = 3570858

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 325    gtgcgcgtcaaggacggggtggtcttcca 353
              |||||||||||||||||| || |||||||
Sbjct: 572939 gtgcgcgtcaaggacgggctgctcttcca 572967
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 158      atgacatgtgggccctccgcg 178
                |||||||||||||||||||||
Sbjct: 29575331 atgacatgtgggccctccgcg 29575311
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 260    agggcggcgggcagccggccgacac 284
              |||||||||| ||||||||||||||
Sbjct: 359193 agggcggcggtcagccggccgacac 359217
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>ref|XM_466757.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 165

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 261 gggcggcgggcagccggccg 280
           ||||||||||||||||||||
Sbjct: 81  gggcggcgggcagccggccg 62
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>ref|XM_463276.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1632

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 171 cctccgcgcccccgccgccg 190
           ||||||||||||||||||||
Sbjct: 449 cctccgcgcccccgccgccg 468
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>gb|AY550262.1| Cricetulus griseus heterochromatin protein 1 alpha (HP1 alpha) gene,
            complete cds
          Length = 43845

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 41   cagcaccaccactgcaggtt 60
            ||||||||||||||||||||
Sbjct: 8751 cagcaccaccactgcaggtt 8732
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 112    gcggggatggcggctccggcgggc 135
              |||||||||||||||| |||||||
Sbjct: 338321 gcggggatggcggctctggcgggc 338298
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>gb|AC130729.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668F02,
             complete sequence
          Length = 178061

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    gcagcaccaccactgcaggt 59
             ||||||||||||||||||||
Sbjct: 90925 gcagcaccaccactgcaggt 90944
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>ref|XM_879234.1| PREDICTED: Bos taurus similar to sterol regulatory element binding
           transcription factor 1 isoform a, transcript variant 3
           (LOC539361), mRNA
          Length = 5424

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 165 gtgggccctccgcgcccccg 184
           ||||||||||||||||||||
Sbjct: 154 gtgggccctccgcgcccccg 135
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>ref|NM_015432.2| Homo sapiens pleckstrin homology domain containing, family G (with
            RhoGef domain) member 4 (PLEKHG4), mRNA
          Length = 6826

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 181  cccgccgccgtcctctccgt 200
            ||||||||||||||||||||
Sbjct: 1852 cccgccgccgtcctctccgt 1833
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>ref|XM_446513.1| Candida glabrata CBS138, CAGL0G03443g partial mRNA
          Length = 3342

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 318  cgaggacgtgcgcgtcaagg 337
            ||||||||||||||||||||
Sbjct: 3240 cgaggacgtgcgcgtcaagg 3259
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>gb|AC091624.3| Canis familiaris clone RP81-117B1, complete sequence
          Length = 174712

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   ggaggagggcggccggcggg 226
             ||||||||||||||||||||
Sbjct: 20940 ggaggagggcggccggcggg 20921
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>emb|Z84488.1|HS93H18 Human DNA sequence from clone RP1-93H18 on chromosome 6q21 Contains the
             3' end of a novel gene, the SART2 gene for squamous cell
             carcinoma antigen recognised by T cell, a chromobox
             homolog 3 (HP1 gamma homolog, Drosophila) (CBX3)
             pseudogene, a keratin 18 (KRT18) pseudogene, a novel gene,
             part of a novel gene and two CpG islands, complete
             sequence
          Length = 160378

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   gccctccgcgcccccgccgc 188
             ||||||||||||||||||||
Sbjct: 36981 gccctccgcgcccccgccgc 36962
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>emb|CR380953.1| Candida glabrata strain CBS138 chromosome G complete sequence
          Length = 992211

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 318    cgaggacgtgcgcgtcaagg 337
              ||||||||||||||||||||
Sbjct: 331970 cgaggacgtgcgcgtcaagg 331951
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>emb|BX842572.1| Mycobacterium tuberculosis H37Rv complete genome; segment 1/13
          Length = 341957

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 112    gcggggatggcggctccggcgggc 135
              |||||||||||||||| |||||||
Sbjct: 338259 gcggggatggcggctctggcgggc 338236
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>emb|BX248334.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 1/14
          Length = 343050

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 112    gcggggatggcggctccggcgggc 135
              |||||||||||||||| |||||||
Sbjct: 339270 gcggggatggcggctctggcgggc 339247
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>gb|AF533768.1| Cercopithecine herpesvirus 1 strain E2490, complete genome
          Length = 156789

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 210    ggagggcggccggcgggcgg 229
              ||||||||||||||||||||
Sbjct: 151835 ggagggcggccggcgggcgg 151816



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 210    ggagggcggccggcgggcgg 229
              ||||||||||||||||||||
Sbjct: 130589 ggagggcggccggcgggcgg 130608
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>gb|BC083431.1| Danio rerio zgc:103575, mRNA (cDNA clone MGC:103575 IMAGE:7243701),
           complete cds
          Length = 2439

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 169 gccctccgcgcccccgccgc 188
           ||||||||||||||||||||
Sbjct: 211 gccctccgcgcccccgccgc 192
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>ref|NM_001005979.1| Danio rerio zgc:103575 (zgc:103575), mRNA
          Length = 2439

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 169 gccctccgcgcccccgccgc 188
           ||||||||||||||||||||
Sbjct: 211 gccctccgcgcccccgccgc 192
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>gb|DQ322650.2| Streptomyces sp. 44414 plasmid pRL2, complete sequence
          Length = 20252

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 216  cggccggcgggcggtggtgc 235
            ||||||||||||||||||||
Sbjct: 8699 cggccggcgggcggtggtgc 8680
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 40       gcagcaccaccactgcaggt 59
                ||||||||||||||||||||
Sbjct: 19949761 gcagcaccaccactgcaggt 19949780
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 213     gggcggccggcgggcggtgg 232
               ||||||||||||||||||||
Sbjct: 6551289 gggcggccggcgggcggtgg 6551270
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>gb|AC040160.4|AC040160 Homo sapiens chromosome 16 clone CTC-277H1, complete sequence
          Length = 209574

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   cccgccgccgtcctctccgt 200
             ||||||||||||||||||||
Sbjct: 59463 cccgccgccgtcctctccgt 59482
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>gb|AC114603.15| Mus musculus chromosome 1, clone RP23-355E19, complete sequence
          Length = 260698

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 174    ccgcgcccccgccgccgtcc 193
              ||||||||||||||||||||
Sbjct: 215348 ccgcgcccccgccgccgtcc 215367
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>dbj|AB197664.1| Homo sapiens prtphn1 mRNA for puratrophin-1 short-form, complete cds
          Length = 6993

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 181  cccgccgccgtcctctccgt 200
            ||||||||||||||||||||
Sbjct: 1852 cccgccgccgtcctctccgt 1833
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>dbj|AB197663.1| Homo sapiens prtphn1 mRNA for puratrophin-1, complete cds
          Length = 6826

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 181  cccgccgccgtcctctccgt 200
            ||||||||||||||||||||
Sbjct: 1852 cccgccgccgtcctctccgt 1833
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 171     cctccgcgcccccgccgccg 190
               ||||||||||||||||||||
Sbjct: 2666325 cctccgcgcccccgccgccg 2666344
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>emb|BX323843.9| Zebrafish DNA sequence from clone CH211-10A23 in linkage group 19,
             complete sequence
          Length = 128245

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   gccctccgcgcccccgccgc 188
             ||||||||||||||||||||
Sbjct: 43166 gccctccgcgcccccgccgc 43147
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 169     gccctccgcgcccccgccgccgtc 192
               |||| |||||||||||||||||||
Sbjct: 3303751 gcccaccgcgcccccgccgccgtc 3303774
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>dbj|AP003217.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:OSJNBa0094H06
          Length = 147245

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 171  cctccgcgcccccgccgccg 190
            ||||||||||||||||||||
Sbjct: 4234 cctccgcgcccccgccgccg 4215
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>dbj|AP003054.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0436D06
          Length = 148246

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 171    cctccgcgcccccgccgccg 190
              ||||||||||||||||||||
Sbjct: 140271 cctccgcgcccccgccgccg 140252
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>dbj|AP005846.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:B1307A11
          Length = 131538

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 213    gggcggccggcgggcggtgg 232
              ||||||||||||||||||||
Sbjct: 111902 gggcggccggcgggcggtgg 111883
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>gb|AY780151.1| Bertia moriformis RNA polymerase II subunit (RPB2) gene, partial
           cds
          Length = 1215

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 188 ccgtcctctccgtccatcaggaggagggcggc 219
           ||||| || ||||||| |||||||||||||||
Sbjct: 686 ccgtcttcaccgtccagcaggaggagggcggc 717
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>dbj|AK073118.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033011J18, full
           insert sequence
          Length = 2034

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 171 cctccgcgcccccgccgccg 190
           ||||||||||||||||||||
Sbjct: 366 cctccgcgcccccgccgccg 385
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 225     ggcggtggtgctggacgcca 244
               ||||||||||||||||||||
Sbjct: 3613865 ggcggtggtgctggacgcca 3613884


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,114,500
Number of Sequences: 3902068
Number of extensions: 3114500
Number of successful extensions: 78931
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77234
Number of HSP's gapped (non-prelim): 1697
length of query: 467
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 445
effective length of database: 17,147,199,772
effective search space: 7630503898540
effective search space used: 7630503898540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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