ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast55g12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|CP000110.1| Synechococcus sp. CC9605, complete genome 42 1.4
2ref|XM_480741.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.4
3emb|AL031430.2|HS406M12 Human DNA sequence from clone RP3-406M12... 42 1.4
4ref|XM_784858.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.4
5emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.4
6emb|BX640423.1| Bordetella parapertussis strain 12822, complete ... 42 1.4
7emb|BX640420.1| Bordetella pertussis strain Tohama I, complete g... 42 1.4
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
9dbj|AP005324.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
10gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 42 1.4
11gb|AC118132.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
12gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
13gb|AC008138.5| Drosophila melanogaster clone BACR27A15, complete... 40 5.7
14gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 5.7
15gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.7
16gb|CP000284.1| Methylobacillus flagellatus KT, complete genome 40 5.7
17gb|DQ376443.1| Orobanche ramosa clone pPraGty18 Ty1-copia-like r... 40 5.7
18emb|AL031963.40|HS40E16 Human DNA sequence from clone RP1-40E16 ... 40 5.7
19gb|AC111162.5| Homo sapiens chromosome 11, clone RP11-75L18, com... 40 5.7
20gb|AC023722.4| Drosophila melanogaster X BAC RP98-48O24 (Roswell... 40 5.7
21gb|AC023706.4| Drosophila melanogaster X BAC RP98-4D11 (Roswell ... 40 5.7
22gb|AC090436.37| Chlamydomonas reinhardtii clone cr-3h1, complete... 40 5.7
23gb|AC090435.28| Chlamydomonas reinhardtii clone cr-32m22, comple... 40 5.7
24ref|NM_001031889.1| Drosophila melanogaster CG33691-RA, transcri... 40 5.7
25ref|NM_001031887.1| Drosophila melanogaster CG33691-RC, transcri... 40 5.7
26ref|NM_001031886.1| Drosophila melanogaster CG33692-RA, transcri... 40 5.7
27gb|AC090599.4| Homo sapiens chromosome 11, clone RP11-674E24, co... 40 5.7
28gb|CP000249.1| Frankia sp. CcI3, complete genome 40 5.7
29tpg|BK004856.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-gr... 40 5.7
30dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
31dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
32dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
33gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.7
34dbj|AP005538.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
35dbj|AP004140.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
36dbj|AK104115.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
37dbj|AK099311.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
38gb|AF201895.1|AF201895 Oryza sativa growth-regulating factor 1 (... 40 5.7
39gb|BT021376.1| Drosophila melanogaster LD46788 full insert cDNA 40 5.7
40dbj|AK061189.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
41dbj|AK058690.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
42gb|AE003632.4| Drosophila melanogaster chromosome 2L, section 41... 40 5.7
43gb|AE003439.3| Drosophila melanogaster chromosome X, section 23 ... 40 5.7
44emb|X57474.1|DMSAL Drosophila spalt gene, involved in embryogenesis 40 5.7 
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 97      tggtggcgctgctctccctcgccgtgcag 125
               ||||||| |||||||||||||||| ||||
Sbjct: 1541092 tggtggctctgctctccctcgccgggcag 1541064
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>ref|XM_480741.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 438

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 214 cctgccctccgccgccgcact 234
           |||||||||||||||||||||
Sbjct: 259 cctgccctccgccgccgcact 239
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>emb|AL031430.2|HS406M12 Human DNA sequence from clone RP3-406M12 on chromosome 1p34.1-34.3
              Contains a CpG island, complete sequence
          Length = 159281

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 151    cctgccccaaaccaattcctcctcc 175
              |||||||||||||| ||||||||||
Sbjct: 125237 cctgccccaaaccatttcctcctcc 125261
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>ref|XM_784858.1| PREDICTED: Strongylocentrotus purpuratus similar to Mucin-5B
            precursor (Mucin 5 subtype B, tracheobronchial) (High
            molecular weight salivary mucin MG1) (Sublingual gland
            mucin) (LOC585017), partial mRNA
          Length = 3487

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 166  ttcctcctccgccacctccgc 186
            |||||||||||||||||||||
Sbjct: 2703 ttcctcctccgccacctccgc 2723
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>emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete genome; segment 1/16
          Length = 347356

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 84     gccccgctcctgctggtggcgctgc 108
              |||||| ||||||||||||||||||
Sbjct: 209883 gccccgatcctgctggtggcgctgc 209859
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>emb|BX640423.1| Bordetella parapertussis strain 12822, complete genome; segment 1/14
          Length = 348251

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 84     gccccgctcctgctggtggcgctgc 108
              |||||| ||||||||||||||||||
Sbjct: 213325 gccccgatcctgctggtggcgctgc 213301
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>emb|BX640420.1| Bordetella pertussis strain Tohama I, complete genome; segment 10/12
          Length = 348134

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 84     gccccgctcctgctggtggcgctgc 108
              |||||| ||||||||||||||||||
Sbjct: 133466 gccccgatcctgctggtggcgctgc 133490
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 214     cctgccctccgccgccgcact 234
               |||||||||||||||||||||
Sbjct: 7378044 cctgccctccgccgccgcact 7378024
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>dbj|AP005324.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0691F12
          Length = 139482

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 214    cctgccctccgccgccgcact 234
              |||||||||||||||||||||
Sbjct: 117473 cctgccctccgccgccgcact 117453
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 123     cagcccacgccgtcggcggcg 143
               |||||||||||||||||||||
Sbjct: 1971517 cagcccacgccgtcggcggcg 1971537
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>gb|AC118132.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0003A09, complete sequence
          Length = 167222

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 86    cccgctcctgctggtggcgctgct 109
             |||||||||||||| |||||||||
Sbjct: 93034 cccgctcctgctggcggcgctgct 93057
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>gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1781_H11,
             complete sequence
          Length = 204649

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   ccgccacctccgcgtaagct 193
             ||||||||||||||||||||
Sbjct: 32223 ccgccacctccgcgtaagct 32242
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>gb|AC008138.5| Drosophila melanogaster clone BACR27A15, complete sequence
          Length = 178208

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   tcctcctccgccacctccgc 186
             ||||||||||||||||||||
Sbjct: 58343 tcctcctccgccacctccgc 58362
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 90      ctcctgctggtggcgctgct 109
               ||||||||||||||||||||
Sbjct: 3301106 ctcctgctggtggcgctgct 3301087
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 86      cccgctcctgctggtggcgctgct 109
               |||||||||||||| |||||||||
Sbjct: 2055611 cccgctcctgctggcggcgctgct 2055634
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>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome
          Length = 2971517

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 94      tgctggtggcgctgctctcc 113
               ||||||||||||||||||||
Sbjct: 1643479 tgctggtggcgctgctctcc 1643460
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>gb|DQ376443.1| Orobanche ramosa clone pPraGty18 Ty1-copia-like retrotransposon
           reverse transcriptase gene, partial cds
          Length = 261

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 52  catcaagctccaagagcatg 71
           ||||||||||||||||||||
Sbjct: 118 catcaagctccaagagcatg 137
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>emb|AL031963.40|HS40E16 Human DNA sequence from clone RP1-40E16 on chromosome 6p24.1-25.3
             Contains the gene for a novel protein similar to D.
             melanogaster CG5327, a pseudogene similar to serine
             proteinase inhibitor (SERPINB8), two putative novel genes,
             the RIPK1 gene for receptor (TNFRSF)-interacting
             serine-threonine kinase 1, the BPHL gene for biphenyl
             hydrolase-like protein (serine hydrolase), the gene for a
             novel protein similar to tubulin beta polypeptide (TUBB),
             a tubulin beta polypeptide (TUBB) pseudogene, the 3' end
             of a novel gene and CpG islands, complete sequence
          Length = 149546

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   gccctgccctccgccgccgc 231
             ||||||||||||||||||||
Sbjct: 26213 gccctgccctccgccgccgc 26232
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>gb|AC111162.5| Homo sapiens chromosome 11, clone RP11-75L18, complete sequence
          Length = 119944

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 90   ctcctgctggtggcgctgct 109
            ||||||||||||||||||||
Sbjct: 5775 ctcctgctggtggcgctgct 5794
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>gb|AC023722.4| Drosophila melanogaster X BAC RP98-48O24 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 191590

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    tcctcctccgccacctccgc 186
              ||||||||||||||||||||
Sbjct: 191549 tcctcctccgccacctccgc 191530
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>gb|AC023706.4| Drosophila melanogaster X BAC RP98-4D11 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 172854

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 167   tcctcctccgccacctccgc 186
             ||||||||||||||||||||
Sbjct: 65688 tcctcctccgccacctccgc 65669
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>gb|AC090436.37| Chlamydomonas reinhardtii clone cr-3h1, complete sequence
          Length = 102653

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 167   tcctcctccgccacctccgc 186
             ||||||||||||||||||||
Sbjct: 72810 tcctcctccgccacctccgc 72791
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>gb|AC090435.28| Chlamydomonas reinhardtii clone cr-32m22, complete sequence
          Length = 79677

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   tcctcctccgccacctccgc 186
             ||||||||||||||||||||
Sbjct: 57060 tcctcctccgccacctccgc 57079
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>ref|NM_001031889.1| Drosophila melanogaster CG33691-RA, transcript variant A (CG33691),
            mRNA
          Length = 4383

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 167  tcctcctccgccacctccgc 186
            ||||||||||||||||||||
Sbjct: 1120 tcctcctccgccacctccgc 1101
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>ref|NM_001031887.1| Drosophila melanogaster CG33691-RC, transcript variant C (CG33691),
           mRNA
          Length = 4186

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 167 tcctcctccgccacctccgc 186
           ||||||||||||||||||||
Sbjct: 923 tcctcctccgccacctccgc 904
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>ref|NM_001031886.1| Drosophila melanogaster CG33692-RA, transcript variant A (CG33692),
            mRNA
          Length = 4383

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 167  tcctcctccgccacctccgc 186
            ||||||||||||||||||||
Sbjct: 1120 tcctcctccgccacctccgc 1101
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>gb|AC090599.4| Homo sapiens chromosome 11, clone RP11-674E24, complete sequence
          Length = 165287

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    ctcctgctggtggcgctgct 109
             ||||||||||||||||||||
Sbjct: 17330 ctcctgctggtggcgctgct 17311
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 91      tcctgctggtggcgctgctc 110
               ||||||||||||||||||||
Sbjct: 2580215 tcctgctggtggcgctgctc 2580196
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>tpg|BK004856.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group)
            growth-regulating factor 1 (GRF1) gene, complete cds
          Length = 4000

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 167  tcctcctccgccacctccgc 186
            ||||||||||||||||||||
Sbjct: 2231 tcctcctccgccacctccgc 2250
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 174      ccgccacctccgcgtaagct 193
                ||||||||||||||||||||
Sbjct: 27952058 ccgccacctccgcgtaagct 27952077
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 86      cccgctcctgctggtggcgctgct 109
               |||||||||||||| |||||||||
Sbjct: 2055623 cccgctcctgctggcggcgctgct 2055646
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 167      tcctcctccgccacctccgc 186
                ||||||||||||||||||||
Sbjct: 32860235 tcctcctccgccacctccgc 32860216
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 130     cgccgtcggcggcgtgcccgtcctgccc 157
               |||||||||| |||||||||||| ||||
Sbjct: 4323944 cgccgtcggccgcgtgcccgtccagccc 4323917
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>dbj|AP005538.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBb0013K01
          Length = 139464

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    tcctcctccgccacctccgc 186
              ||||||||||||||||||||
Sbjct: 118253 tcctcctccgccacctccgc 118234
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>dbj|AP004140.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1534_E09
          Length = 126209

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 167   tcctcctccgccacctccgc 186
             ||||||||||||||||||||
Sbjct: 14976 tcctcctccgccacctccgc 14957
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>dbj|AK104115.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-H12, full
           insert sequence
          Length = 1046

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 86  cccgctcctgctggtggcgctgct 109
           |||||||||||||| |||||||||
Sbjct: 335 cccgctcctgctggcggcgctgct 358
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>dbj|AK099311.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149H01, full
           insert sequence
          Length = 1068

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 86  cccgctcctgctggtggcgctgct 109
           |||||||||||||| |||||||||
Sbjct: 356 cccgctcctgctggcggcgctgct 379
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>gb|AF201895.1|AF201895 Oryza sativa growth-regulating factor 1 (GRF1) mRNA, complete cds
          Length = 1891

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 tcctcctccgccacctccgc 186
           ||||||||||||||||||||
Sbjct: 619 tcctcctccgccacctccgc 638
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>gb|BT021376.1| Drosophila melanogaster LD46788 full insert cDNA
          Length = 4311

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 167  tcctcctccgccacctccgc 186
            ||||||||||||||||||||
Sbjct: 1120 tcctcctccgccacctccgc 1101
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>dbj|AK061189.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-F01, full
           insert sequence
          Length = 1129

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 86  cccgctcctgctggtggcgctgct 109
           |||||||||||||| |||||||||
Sbjct: 417 cccgctcctgctggcggcgctgct 440
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>dbj|AK058690.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-B03, full
           insert sequence
          Length = 1080

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 86  cccgctcctgctggtggcgctgct 109
           |||||||||||||| |||||||||
Sbjct: 319 cccgctcctgctggcggcgctgct 342
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>gb|AE003632.4| Drosophila melanogaster chromosome 2L, section 41 of 83 of the complete
              sequence
          Length = 244231

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 167    tcctcctccgccacctccgc 186
              ||||||||||||||||||||
Sbjct: 171423 tcctcctccgccacctccgc 171442
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>gb|AE003439.3| Drosophila melanogaster chromosome X, section 23 of 74 of the complete
             sequence
          Length = 331952

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 167   tcctcctccgccacctccgc 186
             ||||||||||||||||||||
Sbjct: 37660 tcctcctccgccacctccgc 37641
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>emb|X57474.1|DMSAL Drosophila spalt gene, involved in embryogenesis
          Length = 1622

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 tcctcctccgccacctccgc 186
           ||||||||||||||||||||
Sbjct: 3   tcctcctccgccacctccgc 22


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,055,223
Number of Sequences: 3902068
Number of extensions: 2055223
Number of successful extensions: 48272
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47552
Number of HSP's gapped (non-prelim): 720
length of query: 425
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 403
effective length of database: 17,147,199,772
effective search space: 6910321508116
effective search space used: 6910321508116
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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