>TAF10_MOUSE (Q8K0H5) Transcription initiation factor TFIID subunit 10|
           (Transcription initiation factor TFIID 30 kDa subunit)
           (TAF(II)30) (TAFII-30) (mTAFII30)
          Length = 218

 Score =  102 bits (255), Expect = 3e-22
 Identities = 50/97 (51%), Positives = 68/97 (70%)
 Frame = +2

Query: 149 LTEFLSSLMDYNPTIPDELVEHYLGRSGFHCPDLRLTRLVAVAAQKFISDIASDSLQHCK 328
           L +FL  L DY PTIPD +  +YL R+GF   D R+ RL+++AAQKFISDIA+D+LQHCK
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCK 175

Query: 329 ARVAAPIXDNKSKQPKDRRLVLTMDDLSKALREHGVN 439
            +  A    +   + KDR+  LTM+DL+ AL E+G+N
Sbjct: 176 MKGTA--SGSSRSKSKDRKYTLTMEDLTPALSEYGIN 210

>TAF10_HUMAN (Q12962) Transcription initiation factor TFIID subunit 10|
           (Transcription initiation factor TFIID 30 kDa subunit)
           (TAF(II)30) (TAFII-30) (TAFII30) (STAF28)
          Length = 218

 Score =  102 bits (255), Expect = 3e-22
 Identities = 50/97 (51%), Positives = 68/97 (70%)
 Frame = +2

Query: 149 LTEFLSSLMDYNPTIPDELVEHYLGRSGFHCPDLRLTRLVAVAAQKFISDIASDSLQHCK 328
           L +FL  L DY PTIPD +  +YL R+GF   D R+ RL+++AAQKFISDIA+D+LQHCK
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCK 175

Query: 329 ARVAAPIXDNKSKQPKDRRLVLTMDDLSKALREHGVN 439
            +  A    +   + KDR+  LTM+DL+ AL E+G+N
Sbjct: 176 MKGTA--SGSSRSKSKDRKYTLTMEDLTPALSEYGIN 210

>TAF10_DROME (Q9U5W9) Transcription initiation factor TFIID subunit 10|
           (Transcription initiation factor TFIID 24 kDa subunit)
           (TAFII-24) (TAFII24) (dTAF(II)24)
          Length = 167

 Score = 96.7 bits (239), Expect = 2e-20
 Identities = 49/106 (46%), Positives = 66/106 (62%), Gaps = 6/106 (5%)
 Frame = +2

Query: 137 DEAVLTEFLSSLMDYNPTIPDELVEHYLGRSGFHCPDLRLTRLVAVAAQKFISDIASDSL 316
           +E+ + E +  L DY+PTIPD L  H L  +GF   D ++ RLV+V+AQKFISDIA+D+L
Sbjct: 53  EESEMDELIKQLEDYSPTIPDALTMHILKTAGFCTVDPKIVRLVSVSAQKFISDIANDAL 112

Query: 317 QHCKARV------AAPIXDNKSKQPKDRRLVLTMDDLSKALREHGV 436
           QHCK R       +        K PKDR+  L M+DL  AL +HG+
Sbjct: 113 QHCKTRTTNIQHSSGHSSSKDKKNPKDRKYTLAMEDLVPALADHGI 158

>TAFAB_DROME (Q9XZT7) Transcription initiation factor TFIID subunit 10b|
           (Transcription initiation factor TFIID 16 kDa subunit)
           (TAFII-16) (TAFII16) (dTAF(II)16)
          Length = 146

 Score = 94.7 bits (234), Expect = 9e-20
 Identities = 45/98 (45%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
 Frame = +2

Query: 149 LTEFLSSLMDYNPTIPDELVEHYLGRSGFHCPDLRLTRLVAVAAQKFISDIASDSLQHCK 328
           L++F+S L DY P IPD +  HYL   GF   D R+ RL+++AAQK++SDI  D+LQH K
Sbjct: 41  LSDFMSQLEDYTPLIPDAVTSHYLNMGGFQSDDKRIVRLISLAAQKYMSDIIDDALQHSK 100

Query: 329 ARVAAPIXDNK-SKQPKDRRLVLTMDDLSKALREHGVN 439
           AR      +     + KDR+  LTM+DL  AL ++G+N
Sbjct: 101 ARTHMQTTNTPGGSKAKDRKFTLTMEDLQPALADYGIN 138

>TAF10_YEAST (Q12030) Transcription initiation factor TFIID subunit 10|
           (TBP-associated factor 10) (TBP-associated factor 25
           kDa) (TAFII-23) (TAFII23) (TAFII-25) (TAFII25) (p25)
          Length = 206

 Score = 70.9 bits (172), Expect = 1e-12
 Identities = 39/128 (30%), Positives = 68/128 (53%), Gaps = 28/128 (21%)
 Frame = +2

Query: 140 EAVLTEFLSSLMDYNPTIPDELVEHYLGRSGFHCPDLRLTRLVAVAAQKFISDIASDSLQ 319
           +  L E L  +    P IPD ++++YL ++GF+  D+R+ RL+A+A QKF+SDIA D+ +
Sbjct: 71  DKTLEEILEMMDSTPPIIPDAVIDYYLTKNGFNVADVRVKRLLALATQKFVSDIAKDAYE 130

Query: 320 HCKARVAAPIXDNKSKQPKDRRL----------------------------VLTMDDLSK 415
           + + R +  + +  + Q + R+L                            VLT++DLS 
Sbjct: 131 YSRIRSSVAVSNANNSQARARQLLQGQQQPGVQQISQQQHQQNEKTTASKVVLTVNDLSS 190

Query: 416 ALREHGVN 439
           A+ E+G+N
Sbjct: 191 AVAEYGLN 198

>MUTS_SYMTH (Q67NK1) DNA mismatch repair protein mutS|
          Length = 875

 Score = 32.3 bits (72), Expect = 0.54
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +2

Query: 200 ELVEHY--LGRSGFHCPDLRLTRLVAVAAQKFISDIASDSLQHCKARVAAPIXDNKSKQP 373
           +L EH+     SGF C DL L    A AA  ++ ++   SL H          D     P
Sbjct: 217 KLTEHFGTANLSGFGCEDLELATSAAGAALAYLEEMHKASLGHVSGLAVYYPGDYMVLDP 276

Query: 374 KDRRLVLTMDDLSKALREHG 433
             RR +    +L+++LR+ G
Sbjct: 277 ATRRNL----ELTRSLRDGG 292

>GRPE_LACAC (Q84BU5) Protein grpE (HSP-70 cofactor)|
          Length = 194

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
 Frame = +2

Query: 260 RLVAVAAQKFISDI--ASDSLQHCKARVAAPIXDNKSKQPKDRRLVLTMDDLSKALREHG 433
           +L+   +Q    D+  A D+L+     ++    D+ SKQ K + + +T+D L KA+++HG
Sbjct: 82  QLIKYESQSLAKDVLPAMDNLERA---LSVEADDDVSKQLK-KGVQMTLDALVKAMKDHG 137

Query: 434 V 436
           V
Sbjct: 138 V 138


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,578,102
Number of Sequences: 219361
Number of extensions: 555412
Number of successful extensions: 1694
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1690
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)