ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast55g11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK103717.1| Oryza sativa (japonica cultivar-group) cDNA clon... 389 e-105
2dbj|AK064713.1| Oryza sativa (japonica cultivar-group) cDNA clon... 389 e-105
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
4dbj|AP005747.3| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
5dbj|AP005686.3| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
6ref|NM_179150.2| Arabidopsis thaliana TAFII15; transcription fac... 70 7e-09
7ref|NM_119321.3| Arabidopsis thaliana TAFII15; transcription fac... 70 7e-09
8gb|AY463628.1| Arabidopsis thaliana TAF10 (TAF10) mRNA, partial cds 70 7e-09
9gb|AF352813.1|AF352813 Arabidopsis thaliana putative TBP associa... 70 7e-09
10gb|AF344879.1|AF344879 Arabidopsis thaliana putative TBP-associa... 70 7e-09
11gb|BT004724.1| Arabidopsis thaliana At4g31720 gene, complete cds 70 7e-09
12gb|AY086560.1| Arabidopsis thaliana clone 25793 mRNA, complete s... 70 7e-09
13dbj|AK117827.1| Arabidopsis thaliana At4g31720 mRNA for putative... 70 7e-09
14emb|Y12904.1|ATTAFII A.thaliana mRNA for homologue of human TAFI... 70 7e-09
15emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosome 4, ... 62 2e-06
16emb|AL031004.1|ATF28M20 Arabidopsis thaliana DNA chromosome 4, B... 62 2e-06
17dbj|AB116022.1| Flaveria trinervia TAF10 mRNA for TATA box-bindi... 46 0.096
18gb|AC127595.3| Mus musculus BAC clone RP23-49I18 from chromosome... 44 0.38
19gb|AC164406.5| Mus musculus chromosome 3, clone RP24-391L20, com... 42 1.5
20emb|AL049696.9|HSJ279A18 Human DNA sequence from clone RP1-279A1... 42 1.5
21gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 42 1.5
22gb|AY625683.1| Triticum aestivum NAC domain transcription factor... 42 1.5
23gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 5.9
24gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 40 5.9
25gb|AC125533.4| Mus musculus BAC clone RP23-451C1 from chromosome... 40 5.9
26emb|AL161628.9| Human DNA sequence from clone RP11-31K16 on chro... 40 5.9
27emb|AL445623.2|HS315I14 Homo sapiens chromosome 9 BAC RP11-315I1... 40 5.9
28gb|AC026371.9|AC026371 Homo sapiens 12 BAC RP11-59L15 (Roswell P... 40 5.9
29gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 40 5.9 
>dbj|AK103717.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033138A01, full
           insert sequence
          Length = 966

 Score =  389 bits (196), Expect = e-105
 Identities = 279/307 (90%)
 Strand = Plus / Plus

                                                                       
Query: 129 ggcacgacgacgaggccgtgctcaccgagttcctctcctccctcatggactacaacccca 188
           |||||||||||||||| || |||||||||||||||||||||||||||||||||| ||| |
Sbjct: 274 ggcacgacgacgaggcggtcctcaccgagttcctctcctccctcatggactacaccccta 333

                                                                       
Query: 189 cgattccggacgagctcgtggagcactacctcggccgaagcggcttccactgccccgacc 248
           ||||||| |||||||| |||||||||||||| ||||| ||||||||| ||||||||||||
Sbjct: 334 cgattcccgacgagctggtggagcactaccttggccgcagcggcttctactgccccgacc 393

                                                                       
Query: 249 tacgcctaacaaggctggttgctgtagctgctcaaaagttcatttcagacattgcaagtg 308
           | |||||||| |||||||||||||||||  | |||||||||||||| ||||||||||| |
Sbjct: 394 tccgcctaacgaggctggttgctgtagccacccaaaagttcatttcggacattgcaagcg 453

                                                                       
Query: 309 actctcttcagcactgcaaagccagggttgcagcacctatcanagataacaagagcaaac 368
           |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
Sbjct: 454 actctcttcagcactgcaaagccagggtagcagcacctatcaaagataacaagagcaagc 513

                                                                       
Query: 369 aaccgaaggatagacgtcttgtattgacaatggatgatctttcaaaagccttgcgtgagc 428
           |||| |||||||| |||||||| || ||||||||||||||||| || |||||||  ||||
Sbjct: 514 aacctaaggataggcgtcttgtgttaacaatggatgatctttccaaggccttgcaagagc 573

                  
Query: 429 atggtgt 435
           | |||||
Sbjct: 574 acggtgt 580



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 43  gaggatgatggggagcaaca 62
           ||||||||||||||||||||
Sbjct: 152 gaggatgatggggagcaaca 171
to top
>dbj|AK064713.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-D01, full
           insert sequence
          Length = 714

 Score =  389 bits (196), Expect = e-105
 Identities = 279/307 (90%)
 Strand = Plus / Plus

                                                                       
Query: 129 ggcacgacgacgaggccgtgctcaccgagttcctctcctccctcatggactacaacccca 188
           |||||||||||||||| || |||||||||||||||||||||||||||||||||| ||| |
Sbjct: 116 ggcacgacgacgaggcggtcctcaccgagttcctctcctccctcatggactacaccccta 175

                                                                       
Query: 189 cgattccggacgagctcgtggagcactacctcggccgaagcggcttccactgccccgacc 248
           ||||||| |||||||| |||||||||||||| ||||| ||||||||| ||||||||||||
Sbjct: 176 cgattcccgacgagctggtggagcactaccttggccgcagcggcttctactgccccgacc 235

                                                                       
Query: 249 tacgcctaacaaggctggttgctgtagctgctcaaaagttcatttcagacattgcaagtg 308
           | |||||||| |||||||||||||||||  | |||||||||||||| ||||||||||| |
Sbjct: 236 tccgcctaacgaggctggttgctgtagccacccaaaagttcatttcggacattgcaagcg 295

                                                                       
Query: 309 actctcttcagcactgcaaagccagggttgcagcacctatcanagataacaagagcaaac 368
           |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
Sbjct: 296 actctcttcagcactgcaaagccagggtagcagcacctatcaaagataacaagagcaagc 355

                                                                       
Query: 369 aaccgaaggatagacgtcttgtattgacaatggatgatctttcaaaagccttgcgtgagc 428
           |||| |||||||| |||||||| || ||||||||||||||||| || |||||||  ||||
Sbjct: 356 aacctaaggataggcgtcttgtgttaacaatggatgatctttccaaggccttgcaagagc 415

                  
Query: 429 atggtgt 435
           | |||||
Sbjct: 416 acggtgt 422
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 52/54 (96%)
 Strand = Plus / Minus

                                                                      
Query: 129      ggcacgacgacgaggccgtgctcaccgagttcctctcctccctcatggactaca 182
                |||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 15729962 ggcacgacgacgaggcggtcctcaccgagttcctctcctccctcatggactaca 15729909



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                           
Query: 319      gcactgcaaagccagggttgcagcacctatcanagataacaagagcaaacaaccgaagg 377
                |||||||||||||||||| ||||||||||||| ||||||||||||||| ||||| ||||
Sbjct: 15728752 gcactgcaaagccagggtagcagcacctatcaaagataacaagagcaagcaacctaagg 15728694



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 60/66 (90%)
 Strand = Plus / Minus

                                                                            
Query: 190      gattccggacgagctcgtggagcactacctcggccgaagcggcttccactgccccgacct 249
                |||||| |||||||| |||||||||||||| ||||| ||||||||| |||||||||||||
Sbjct: 15729805 gattcccgacgagctggtggagcactaccttggccgcagcggcttctactgccccgacct 15729746

                      
Query: 250      acgcct 255
                 |||||
Sbjct: 15729745 ccgcct 15729740



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 55/60 (91%)
 Strand = Plus / Minus

                                                                            
Query: 260      aggctggttgctgtagctgctcaaaagttcatttcagacattgcaagtgactctcttcag 319
                |||||||||||||||||  | |||||||||||||| ||||||||||| ||||||||||||
Sbjct: 15729394 aggctggttgctgtagccacccaaaagttcatttcggacattgcaagcgactctcttcag 15729335



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                                
Query: 375      aggatagacgtcttgtattgacaatggatgatctttcaaaagccttgc 422
                ||||||| |||||||| || ||||||||||||||||| || |||||||
Sbjct: 15728609 aggataggcgtcttgtgttaacaatggatgatctttccaaggccttgc 15728562



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 43       gaggatgatggggagcaaca 62
                ||||||||||||||||||||
Sbjct: 15730084 gaggatgatggggagcaaca 15730065
to top
>dbj|AP005747.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0039E17
          Length = 144126

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 52/54 (96%)
 Strand = Plus / Minus

                                                                   
Query: 129   ggcacgacgacgaggccgtgctcaccgagttcctctcctccctcatggactaca 182
             |||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 15148 ggcacgacgacgaggcggtcctcaccgagttcctctcctccctcatggactaca 15095



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                        
Query: 319   gcactgcaaagccagggttgcagcacctatcanagataacaagagcaaacaaccgaagg 377
             |||||||||||||||||| ||||||||||||| ||||||||||||||| ||||| ||||
Sbjct: 13938 gcactgcaaagccagggtagcagcacctatcaaagataacaagagcaagcaacctaagg 13880



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 60/66 (90%)
 Strand = Plus / Minus

                                                                         
Query: 190   gattccggacgagctcgtggagcactacctcggccgaagcggcttccactgccccgacct 249
             |||||| |||||||| |||||||||||||| ||||| ||||||||| |||||||||||||
Sbjct: 14991 gattcccgacgagctggtggagcactaccttggccgcagcggcttctactgccccgacct 14932

                   
Query: 250   acgcct 255
              |||||
Sbjct: 14931 ccgcct 14926



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 55/60 (91%)
 Strand = Plus / Minus

                                                                         
Query: 260   aggctggttgctgtagctgctcaaaagttcatttcagacattgcaagtgactctcttcag 319
             |||||||||||||||||  | |||||||||||||| ||||||||||| ||||||||||||
Sbjct: 14580 aggctggttgctgtagccacccaaaagttcatttcggacattgcaagcgactctcttcag 14521



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                             
Query: 375   aggatagacgtcttgtattgacaatggatgatctttcaaaagccttgc 422
             ||||||| |||||||| || ||||||||||||||||| || |||||||
Sbjct: 13795 aggataggcgtcttgtgttaacaatggatgatctttccaaggccttgc 13748



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    gaggatgatggggagcaaca 62
             ||||||||||||||||||||
Sbjct: 15270 gaggatgatggggagcaaca 15251
to top
>dbj|AP005686.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0016E03
          Length = 152934

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 52/54 (96%)
 Strand = Plus / Minus

                                                                    
Query: 129    ggcacgacgacgaggccgtgctcaccgagttcctctcctccctcatggactaca 182
              |||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 121269 ggcacgacgacgaggcggtcctcaccgagttcctctcctccctcatggactaca 121216



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                         
Query: 319    gcactgcaaagccagggttgcagcacctatcanagataacaagagcaaacaaccgaagg 377
              |||||||||||||||||| ||||||||||||| ||||||||||||||| ||||| ||||
Sbjct: 120059 gcactgcaaagccagggtagcagcacctatcaaagataacaagagcaagcaacctaagg 120001



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 60/66 (90%)
 Strand = Plus / Minus

                                                                          
Query: 190    gattccggacgagctcgtggagcactacctcggccgaagcggcttccactgccccgacct 249
              |||||| |||||||| |||||||||||||| ||||| ||||||||| |||||||||||||
Sbjct: 121112 gattcccgacgagctggtggagcactaccttggccgcagcggcttctactgccccgacct 121053

                    
Query: 250    acgcct 255
               |||||
Sbjct: 121052 ccgcct 121047



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 55/60 (91%)
 Strand = Plus / Minus

                                                                          
Query: 260    aggctggttgctgtagctgctcaaaagttcatttcagacattgcaagtgactctcttcag 319
              |||||||||||||||||  | |||||||||||||| ||||||||||| ||||||||||||
Sbjct: 120701 aggctggttgctgtagccacccaaaagttcatttcggacattgcaagcgactctcttcag 120642



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                              
Query: 375    aggatagacgtcttgtattgacaatggatgatctttcaaaagccttgc 422
              ||||||| |||||||| || ||||||||||||||||| || |||||||
Sbjct: 119916 aggataggcgtcttgtgttaacaatggatgatctttccaaggccttgc 119869



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     gaggatgatggggagcaaca 62
              ||||||||||||||||||||
Sbjct: 121391 gaggatgatggggagcaaca 121372
to top
>ref|NM_179150.2| Arabidopsis thaliana TAFII15; transcription factor AT4G31720
           (TAFII15) transcript variant AT4G31720.2 mRNA, complete
           cds
          Length = 851

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                          
Query: 389 gtattgacaatggatgatctttcaaaagccttgcgtgagcatggtgt 435
           |||||||||||||| |||||||||||||| ||||||||| |||||||
Sbjct: 461 gtattgacaatggaagatctttcaaaagctttgcgtgagtatggtgt 507
to top
>ref|NM_119321.3| Arabidopsis thaliana TAFII15; transcription factor AT4G31720
           (TAFII15) transcript variant AT4G31720.1 mRNA, complete
           cds
          Length = 868

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                          
Query: 389 gtattgacaatggatgatctttcaaaagccttgcgtgagcatggtgt 435
           |||||||||||||| |||||||||||||| ||||||||| |||||||
Sbjct: 478 gtattgacaatggaagatctttcaaaagctttgcgtgagtatggtgt 524
to top
>gb|AY463628.1| Arabidopsis thaliana TAF10 (TAF10) mRNA, partial cds
          Length = 402

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                          
Query: 389 gtattgacaatggatgatctttcaaaagccttgcgtgagcatggtgt 435
           |||||||||||||| |||||||||||||| ||||||||| |||||||
Sbjct: 286 gtattgacaatggaagatctttcaaaagctttgcgtgagtatggtgt 332
to top
>gb|AF352813.1|AF352813 Arabidopsis thaliana putative TBP associated factor 15kDa subunit
           (TAFII15) mRNA, complete cds
          Length = 800

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                          
Query: 389 gtattgacaatggatgatctttcaaaagccttgcgtgagcatggtgt 435
           |||||||||||||| |||||||||||||| ||||||||| |||||||
Sbjct: 473 gtattgacaatggaagatctttcaaaagctttgcgtgagtatggtgt 519
to top
>gb|AF344879.1|AF344879 Arabidopsis thaliana putative TBP-associated 15 kDa subunit protein
           (TAFII15) mRNA, complete cds
          Length = 592

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                          
Query: 389 gtattgacaatggatgatctttcaaaagccttgcgtgagcatggtgt 435
           |||||||||||||| |||||||||||||| ||||||||| |||||||
Sbjct: 473 gtattgacaatggaagatctttcaaaagctttgcgtgagtatggtgt 519
to top
>gb|BT004724.1| Arabidopsis thaliana At4g31720 gene, complete cds
          Length = 405

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                          
Query: 389 gtattgacaatggatgatctttcaaaagccttgcgtgagcatggtgt 435
           |||||||||||||| |||||||||||||| ||||||||| |||||||
Sbjct: 286 gtattgacaatggaagatctttcaaaagctttgcgtgagtatggtgt 332
to top
>gb|AY086560.1| Arabidopsis thaliana clone 25793 mRNA, complete sequence
          Length = 786

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                          
Query: 389 gtattgacaatggatgatctttcaaaagccttgcgtgagcatggtgt 435
           |||||||||||||| |||||||||||||| ||||||||| |||||||
Sbjct: 478 gtattgacaatggaagatctttcaaaagctttgcgtgagtatggtgt 524
to top
>dbj|AK117827.1| Arabidopsis thaliana At4g31720 mRNA for putative transcription
           factor II, complete cds, clone: RAFL18-02-M21
          Length = 769

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                          
Query: 389 gtattgacaatggatgatctttcaaaagccttgcgtgagcatggtgt 435
           |||||||||||||| |||||||||||||| ||||||||| |||||||
Sbjct: 461 gtattgacaatggaagatctttcaaaagctttgcgtgagtatggtgt 507
to top
>emb|Y12904.1|ATTAFII A.thaliana mRNA for homologue of human TAFII30 and yeast TAFII25/23
          Length = 810

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                          
Query: 389 gtattgacaatggatgatctttcaaaagccttgcgtgagcatggtgt 435
           |||||||||||||| |||||||||||||| ||||||||| |||||||
Sbjct: 463 gtattgacaatggaagatctttcaaaagctttgcgtgagtatggtgt 509
to top
>emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 75
          Length = 196242

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                     
Query: 389    gtattgacaatggatgatctttcaaaagccttgcgtgag 427
              |||||||||||||| |||||||||||||| |||||||||
Sbjct: 120587 gtattgacaatggaagatctttcaaaagctttgcgtgag 120549
to top
>emb|AL031004.1|ATF28M20 Arabidopsis thaliana DNA chromosome 4, BAC clone F28M20 (ESSAII
             project)
          Length = 90902

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                    
Query: 389   gtattgacaatggatgatctttcaaaagccttgcgtgag 427
             |||||||||||||| |||||||||||||| |||||||||
Sbjct: 32684 gtattgacaatggaagatctttcaaaagctttgcgtgag 32722
to top
>dbj|AB116022.1| Flaveria trinervia TAF10 mRNA for TATA box-binding protein
           associated factor 10, complete cds
          Length = 790

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                       
Query: 260 aggctggttgctgtagctgctcaaaagttcatttcagacattgcaagtgactctcttcag 319
           ||||| || ||||| || ||||| |||||  ||||||||||||| | |||  ||||||| 
Sbjct: 322 aggctagtggctgttgcagctcagaagtttgtttcagacattgctattgatgctcttcaa 381

                      
Query: 320 cactgcaaagc 330
           |||||||||||
Sbjct: 382 cactgcaaagc 392
to top
>gb|AC127595.3| Mus musculus BAC clone RP23-49I18 from chromosome 7, complete sequence
          Length = 239586

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 326    aaagccagggttgcagcaccta 347
              ||||||||||||||||||||||
Sbjct: 183409 aaagccagggttgcagcaccta 183388
to top
>gb|AC164406.5| Mus musculus chromosome 3, clone RP24-391L20, complete sequence
          Length = 134552

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 293   tcagacattgcaagtgactct 313
             |||||||||||||||||||||
Sbjct: 45560 tcagacattgcaagtgactct 45580
to top
>emb|AL049696.9|HSJ279A18 Human DNA sequence from clone RP1-279A18 on chromosome 6q13-15 Contains
              the 3' part of the BCKDHB gene for branched chain keto acid
              dehydrogenase E1, beta polypeptide (maple syrup urine
              disease), complete sequence
          Length = 142707

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 316    tcagcactgcaaagccagggt 336
              |||||||||||||||||||||
Sbjct: 132219 tcagcactgcaaagccagggt 132239
to top
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 133     cgacgacgaggccgtgctcaccgag 157
               |||||||| ||||||||||||||||
Sbjct: 1179788 cgacgacgtggccgtgctcaccgag 1179812
to top
>gb|AY625683.1| Triticum aestivum NAC domain transcription factor (NAC2) mRNA,
           complete cds
          Length = 1450

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 197 gacgagctcgtggagcactacctcggccg 225
           ||||||||||| |||||||||||| ||||
Sbjct: 181 gacgagctcgtcgagcactacctctgccg 209
to top
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 133     cgacgacgaggccgtgctcaccga 156
               ||||||| ||||||||||||||||
Sbjct: 1127153 cgacgacaaggccgtgctcaccga 1127176
to top
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 166     ctccctcatggactacaacc 185
               ||||||||||||||||||||
Sbjct: 1223064 ctccctcatggactacaacc 1223083
to top
>gb|AC125533.4| Mus musculus BAC clone RP23-451C1 from chromosome 5, complete sequence
          Length = 180892

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 310   ctctcttcagcactgcaaag 329
             ||||||||||||||||||||
Sbjct: 52033 ctctcttcagcactgcaaag 52014
to top
>emb|AL161628.9| Human DNA sequence from clone RP11-31K16 on chromosome 9 Contains a
             pseudogene similar to part of nucleolar protein 5A (56kDa
             with KKE/D repeat) (NOL5A) (NOP56), the ELAVL2 gene for
             ELAV (embryonic lethal, abnormal vision, Drosophila)-like
             2 (Hu antigen B) (HUB, HELN1), two novel genes, the 5' end
             of a novel gene and a CpG island, complete sequence
          Length = 183483

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 309   actctcttcagcactgcaaa 328
             ||||||||||||||||||||
Sbjct: 50288 actctcttcagcactgcaaa 50307
to top
>emb|AL445623.2|HS315I14 Homo sapiens chromosome 9 BAC RP11-315I14, complete sequence
          Length = 198637

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 309    actctcttcagcactgcaaa 328
              ||||||||||||||||||||
Sbjct: 175879 actctcttcagcactgcaaa 175898
to top
>gb|AC026371.9|AC026371 Homo sapiens 12 BAC RP11-59L15 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 152951

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 296  gacattgcaagtgactctct 315
            ||||||||||||||||||||
Sbjct: 2041 gacattgcaagtgactctct 2022
to top
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 229    cggcttccactgccccgacc 248
              ||||||||||||||||||||
Sbjct: 279656 cggcttccactgccccgacc 279637


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,662,492
Number of Sequences: 3902068
Number of extensions: 2662492
Number of successful extensions: 51572
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51428
Number of HSP's gapped (non-prelim): 144
length of query: 441
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 419
effective length of database: 17,147,199,772
effective search space: 7184676704468
effective search space used: 7184676704468
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top