ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast55g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AFRP_STRGR (Q9ZN78) A-factor receptor protein (A-factor-binding ... 30 2.2
2M3K11_HUMAN (Q16584) Mitogen-activated protein kinase kinase kin... 30 2.2
3PSV_DICDI (P08798) Prespore vesicle protein precursor (PSV) 30 2.8
4GSTX2_MAIZE (P50472) Probable glutathione S-transferase BZ2 (EC ... 30 3.7
5SYNJ1_MOUSE (Q8CHC4) Synaptojanin-1 (EC 3.1.3.36) (Synaptic inos... 29 4.8
6DDX56_HUMAN (Q9NY93) Probable ATP-dependent RNA helicase DDX56 (... 29 6.3
7SLDA1_GLUOX (Q70JN9) Glycerol dehydrogenase large subunit precur... 28 8.2
8RS5_NITMU (Q2YAY0) 30S ribosomal protein S5 28 8.2
9SLDA2_GLUOX (Q8KIL1) Glycerol dehydrogenase large subunit precur... 28 8.2

>AFRP_STRGR (Q9ZN78) A-factor receptor protein (A-factor-binding protein)|
          Length = 276

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
 Frame = +2

Query: 317 VPEADAGAVRPRRG------HALPHVAHPAARGHVRPDG 415
           V EAD+G    R        H LP +AHP    H++P+G
Sbjct: 159 VSEADSGRADLRGQVAEMWRHILPSIAHPGVIAHIKPEG 197



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>M3K11_HUMAN (Q16584) Mitogen-activated protein kinase kinase kinase 11 (EC|
           2.7.11.25) (Mixed lineage kinase 3) (Src-homology 3
           domain-containing proline-rich kinase)
          Length = 847

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 352 ARPRTSPCRSSGCPWTCATGRPWRSPTPS 438
           +RPR SP RS   PW+  +  P  SP PS
Sbjct: 765 SRPRPSPLRSRIDPWSFVSAGPRPSPLPS 793



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>PSV_DICDI (P08798) Prespore vesicle protein precursor (PSV)|
          Length = 513

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 419 HGRPVAHVHGQPDERHGEVRGLAEAGPLQHPLLERHA 309
           H +P  HV  Q  ++H +      A P+QH   ++HA
Sbjct: 347 HAKPAQHVAQQQQQQHAKPAAHTAAKPVQHNAQQQHA 383



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>GSTX2_MAIZE (P50472) Probable glutathione S-transferase BZ2 (EC 2.5.1.18)|
           (Protein bronze-2)
          Length = 236

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 20/45 (44%), Positives = 25/45 (55%)
 Frame = +2

Query: 278 LPAVRAVQRAEHGVPEADAGAVRPRRGHALPHVAHPAARGHVRPD 412
           LPA+RA +R  HG+   DA A     G +    AHPAA+  V PD
Sbjct: 172 LPALRACERL-HGLSLIDASATPLLDGWSQRFAAHPAAK-RVLPD 214



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>SYNJ1_MOUSE (Q8CHC4) Synaptojanin-1 (EC 3.1.3.36) (Synaptic|
            inositol-1,4,5-trisphosphate 5-phosphatase 1)
          Length = 1574

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 8/42 (19%)
 Frame = +1

Query: 349  SARPRTSPCRSSGCPWTCATG---RPWRSPT-----PSSSGS 450
            S+ PRTSPC+S   P   A     RP R+P+     PSS GS
Sbjct: 1043 SSSPRTSPCQSPTVPEYSAPSLPIRPSRAPSRTPGPPSSQGS 1084



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>DDX56_HUMAN (Q9NY93) Probable ATP-dependent RNA helicase DDX56 (EC 3.6.1.-)|
           (DEAD box protein 56) (ATP-dependent 61 kDa nucleolar
           RNA helicase) (DEAD-box protein 21)
          Length = 547

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 290 RAVQRAEHGVPEADAGAVRPRRGHALPHVAHPAARGHVRP 409
           R +Q   H +P   A  V+P  GH   ++  PA RG VRP
Sbjct: 469 RDLQLLRHDLPLHPA-VVKPHLGHVPDYLVPPALRGLVRP 507



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>SLDA1_GLUOX (Q70JN9) Glycerol dehydrogenase large subunit precursor (EC|
           1.1.99.22) (Gluconate/polyol dehydrogenase large
           subunit) (D-sorbitol dehydrogenase subunit sldA) (SLDH)
           (D-arabitol dehydrogenase large subunit) (ARDH)
          Length = 743

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 376 RSSGCPWTCATGRPWRSPTPSSSGS 450
           R++G PW   TG PW   TP++ GS
Sbjct: 639 RANG-PWGLPTGLPWEIGTPNNGGS 662



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>RS5_NITMU (Q2YAY0) 30S ribosomal protein S5|
          Length = 180

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = -1

Query: 440 DDGVGLLHGR----PVAHVHGQPDERHGEVRGLAEAGPLQHPLLERH 312
           D GVG+  G+    PVA      + R   ++   + G LQHP++ RH
Sbjct: 54  DGGVGMGKGKSREVPVAVQKAMDEARRKMIKVSLKNGTLQHPVIGRH 100



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>SLDA2_GLUOX (Q8KIL1) Glycerol dehydrogenase large subunit precursor (EC|
           1.1.99.22) (Gluconate/polyol dehydrogenase large
           subunit) (D-sorbitol dehydrogenase subunit sldA) (SLDH)
           (D-arabitol dehydrogenase large subunit) (ARDH)
          Length = 740

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 376 RSSGCPWTCATGRPWRSPTPSSSGS 450
           R++G PW   TG PW   TP++ GS
Sbjct: 635 RANG-PWGLPTGLPWEIGTPNNGGS 658


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.127    0.488 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,274,466
Number of Sequences: 219361
Number of extensions: 810978
Number of successful extensions: 3039
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3037
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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