ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast55g05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_464560.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1499 Score = 268 bits (135), Expect = 1e-68 Identities = 203/226 (89%) Strand = Plus / Plus Query: 173 gggctgctggcgaacggcaacttcgagcgcgggccgcagccgtcgcagctgcgcgggacg 232 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 239 gggctgctggcgaacggcaacttcgagcgcgggccggcgccgtcgcagctgcgcgggacg 298 Query: 233 caggtggtgggcgcgtcgtcgatcccgtcgtggcggacgtcggggttcgtggagtacatc 292 | |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 299 cgggtggtcggcgcgtcggcgatcccgtcgtggcggacgtcggggttcgtggagtacatc 358 Query: 293 ccgtcggggcaaaagcagggggacatggtgctggtcgtccccgagggcgcctacgccgtg 352 ||||||||| ||||||||||||||||||||||| ||||||||||| | |||| ||| Sbjct: 359 ccgtcggggaggaagcagggggacatggtgctggtggtccccgaggggagccacgcggtg 418 Query: 353 cgcctngggcacgaggcgtccatcgcgcagcgtctccgcggcgcgg 398 || || ||| |||||||||| ||| |||||| ||| |||||||| Sbjct: 419 cggctcgggaacgaggcgtcgatccggcagcggctcgccggcgcgg 464
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 268 bits (135), Expect = 1e-68 Identities = 203/226 (89%) Strand = Plus / Minus Query: 173 gggctgctggcgaacggcaacttcgagcgcgggccgcagccgtcgcagctgcgcgggacg 232 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 5913954 gggctgctggcgaacggcaacttcgagcgcgggccggcgccgtcgcagctgcgcgggacg 5913895 Query: 233 caggtggtgggcgcgtcgtcgatcccgtcgtggcggacgtcggggttcgtggagtacatc 292 | |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 5913894 cgggtggtcggcgcgtcggcgatcccgtcgtggcggacgtcggggttcgtggagtacatc 5913835 Query: 293 ccgtcggggcaaaagcagggggacatggtgctggtcgtccccgagggcgcctacgccgtg 352 ||||||||| ||||||||||||||||||||||| ||||||||||| | |||| ||| Sbjct: 5913834 ccgtcggggaggaagcagggggacatggtgctggtggtccccgaggggagccacgcggtg 5913775 Query: 353 cgcctngggcacgaggcgtccatcgcgcagcgtctccgcggcgcgg 398 || || ||| |||||||||| ||| |||||| ||| |||||||| Sbjct: 5913774 cggctcgggaacgaggcgtcgatccggcagcggctcgccggcgcgg 5913729 Score = 155 bits (78), Expect = 1e-34 Identities = 137/157 (87%) Strand = Plus / Plus Query: 242 ggcgcgtcgtcgatcccgtcgtggcggacgtcggggttcgtggagtacatcccgtcgggg 301 ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct: 19342382 ggcgcgtcggcgatcccgtcgtggcggacgttggggttcgtggagtacatcccgtcaggg 19342441 Query: 302 caaaagcagggggacatggtgctggtcgtccccgagggcgcctacgccgtgcgcctnggg 361 | |||||||||| |||||||||||| ||||||||||| |||||| ||||| || ||| Sbjct: 19342442 aagaagcaggggggcatggtgctggttgtccccgaggggagctacgcggtgcggctcggg 19342501 Query: 362 cacgaggcgtccatcgcgcagcgtctccgcggcgcgg 398 |||||||||| ||| |||||| ||| |||||||| Sbjct: 19342502 aacgaggcgtcgatccggcagcgcctcgccggcgcgg 19342538
>dbj|AP005915.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0056C19 Length = 147739 Score = 268 bits (135), Expect = 1e-68 Identities = 203/226 (89%) Strand = Plus / Minus Query: 173 gggctgctggcgaacggcaacttcgagcgcgggccgcagccgtcgcagctgcgcgggacg 232 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 92175 gggctgctggcgaacggcaacttcgagcgcgggccggcgccgtcgcagctgcgcgggacg 92116 Query: 233 caggtggtgggcgcgtcgtcgatcccgtcgtggcggacgtcggggttcgtggagtacatc 292 | |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 92115 cgggtggtcggcgcgtcggcgatcccgtcgtggcggacgtcggggttcgtggagtacatc 92056 Query: 293 ccgtcggggcaaaagcagggggacatggtgctggtcgtccccgagggcgcctacgccgtg 352 ||||||||| ||||||||||||||||||||||| ||||||||||| | |||| ||| Sbjct: 92055 ccgtcggggaggaagcagggggacatggtgctggtggtccccgaggggagccacgcggtg 91996 Query: 353 cgcctngggcacgaggcgtccatcgcgcagcgtctccgcggcgcgg 398 || || ||| |||||||||| ||| |||||| ||| |||||||| Sbjct: 91995 cggctcgggaacgaggcgtcgatccggcagcggctcgccggcgcgg 91950
>dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0544H11 Length = 178376 Score = 268 bits (135), Expect = 1e-68 Identities = 203/226 (89%) Strand = Plus / Minus Query: 173 gggctgctggcgaacggcaacttcgagcgcgggccgcagccgtcgcagctgcgcgggacg 232 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 143756 gggctgctggcgaacggcaacttcgagcgcgggccggcgccgtcgcagctgcgcgggacg 143697 Query: 233 caggtggtgggcgcgtcgtcgatcccgtcgtggcggacgtcggggttcgtggagtacatc 292 | |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 143696 cgggtggtcggcgcgtcggcgatcccgtcgtggcggacgtcggggttcgtggagtacatc 143637 Query: 293 ccgtcggggcaaaagcagggggacatggtgctggtcgtccccgagggcgcctacgccgtg 352 ||||||||| ||||||||||||||||||||||| ||||||||||| | |||| ||| Sbjct: 143636 ccgtcggggaggaagcagggggacatggtgctggtggtccccgaggggagccacgcggtg 143577 Query: 353 cgcctngggcacgaggcgtccatcgcgcagcgtctccgcggcgcgg 398 || || ||| |||||||||| ||| |||||| ||| |||||||| Sbjct: 143576 cggctcgggaacgaggcgtcgatccggcagcggctcgccggcgcgg 143531
>dbj|AK106819.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-D06, full insert sequence Length = 1498 Score = 268 bits (135), Expect = 1e-68 Identities = 203/226 (89%) Strand = Plus / Plus Query: 173 gggctgctggcgaacggcaacttcgagcgcgggccgcagccgtcgcagctgcgcgggacg 232 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 239 gggctgctggcgaacggcaacttcgagcgcgggccggcgccgtcgcagctgcgcgggacg 298 Query: 233 caggtggtgggcgcgtcgtcgatcccgtcgtggcggacgtcggggttcgtggagtacatc 292 | |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 299 cgggtggtcggcgcgtcggcgatcccgtcgtggcggacgtcggggttcgtggagtacatc 358 Query: 293 ccgtcggggcaaaagcagggggacatggtgctggtcgtccccgagggcgcctacgccgtg 352 ||||||||| ||||||||||||||||||||||| ||||||||||| | |||| ||| Sbjct: 359 ccgtcggggaggaagcagggggacatggtgctggtggtccccgaggggagccacgcggtg 418 Query: 353 cgcctngggcacgaggcgtccatcgcgcagcgtctccgcggcgcgg 398 || || ||| |||||||||| ||| |||||| ||| |||||||| Sbjct: 419 cggctcgggaacgaggcgtcgatccggcagcggctcgccggcgcgg 464
>ref|XM_466051.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1089 Score = 155 bits (78), Expect = 1e-34 Identities = 137/157 (87%) Strand = Plus / Plus Query: 242 ggcgcgtcgtcgatcccgtcgtggcggacgtcggggttcgtggagtacatcccgtcgggg 301 ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct: 619 ggcgcgtcggcgatcccgtcgtggcggacgttggggttcgtggagtacatcccgtcaggg 678 Query: 302 caaaagcagggggacatggtgctggtcgtccccgagggcgcctacgccgtgcgcctnggg 361 | |||||||||| |||||||||||| ||||||||||| |||||| ||||| || ||| Sbjct: 679 aagaagcaggggggcatggtgctggttgtccccgaggggagctacgcggtgcggctcggg 738 Query: 362 cacgaggcgtccatcgcgcagcgtctccgcggcgcgg 398 |||||||||| ||| |||||| ||| |||||||| Sbjct: 739 aacgaggcgtcgatccggcagcgcctcgccggcgcgg 775
>dbj|AP004879.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0475F05 Length = 147522 Score = 155 bits (78), Expect = 1e-34 Identities = 137/157 (87%) Strand = Plus / Plus Query: 242 ggcgcgtcgtcgatcccgtcgtggcggacgtcggggttcgtggagtacatcccgtcgggg 301 ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct: 27873 ggcgcgtcggcgatcccgtcgtggcggacgttggggttcgtggagtacatcccgtcaggg 27932 Query: 302 caaaagcagggggacatggtgctggtcgtccccgagggcgcctacgccgtgcgcctnggg 361 | |||||||||| |||||||||||| ||||||||||| |||||| ||||| || ||| Sbjct: 27933 aagaagcaggggggcatggtgctggttgtccccgaggggagctacgcggtgcggctcggg 27992 Query: 362 cacgaggcgtccatcgcgcagcgtctccgcggcgcgg 398 |||||||||| ||| |||||| ||| |||||||| Sbjct: 27993 aacgaggcgtcgatccggcagcgcctcgccggcgcgg 28029
>dbj|AP004777.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0458B05 Length = 144917 Score = 155 bits (78), Expect = 1e-34 Identities = 137/157 (87%) Strand = Plus / Plus Query: 242 ggcgcgtcgtcgatcccgtcgtggcggacgtcggggttcgtggagtacatcccgtcgggg 301 ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct: 110180 ggcgcgtcggcgatcccgtcgtggcggacgttggggttcgtggagtacatcccgtcaggg 110239 Query: 302 caaaagcagggggacatggtgctggtcgtccccgagggcgcctacgccgtgcgcctnggg 361 | |||||||||| |||||||||||| ||||||||||| |||||| ||||| || ||| Sbjct: 110240 aagaagcaggggggcatggtgctggttgtccccgaggggagctacgcggtgcggctcggg 110299 Query: 362 cacgaggcgtccatcgcgcagcgtctccgcggcgcgg 398 |||||||||| ||| |||||| ||| |||||||| Sbjct: 110300 aacgaggcgtcgatccggcagcgcctcgccggcgcgg 110336
>ref|NM_192744.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1122 Score = 99.6 bits (50), Expect = 7e-18 Identities = 94/109 (86%) Strand = Plus / Plus Query: 268 gacgtcggggttcgtggagtacatcccgtcggggcaaaagcagggggacatggtgctggt 327 |||||| |||||||||||||||||| ||| ||||| ||||||||||||||| ||||||| Sbjct: 174 gacgtccgggttcgtggagtacatcgagtccgggcacaagcagggggacatgctgctggt 233 Query: 328 cgtccccgagggcgcctacgccgtgcgcctngggcacgaggcgtccatc 376 || || ||||||| ||||||||||||| || |||||||||||||| Sbjct: 234 ggtgccgcagggcgcgcacgccgtgcgcctcggcaacgaggcgtccatc 282 Score = 46.1 bits (23), Expect = 0.093 Identities = 32/35 (91%) Strand = Plus / Plus Query: 165 tcaccgatgggctgctggcgaacggcaacttcgag 199 ||||||| |||||| || ||||||||||||||||| Sbjct: 68 tcaccgacgggctgttgccgaacggcaacttcgag 102
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 99.6 bits (50), Expect = 7e-18 Identities = 94/109 (86%) Strand = Plus / Plus Query: 268 gacgtcggggttcgtggagtacatcccgtcggggcaaaagcagggggacatggtgctggt 327 |||||| |||||||||||||||||| ||| ||||| ||||||||||||||| ||||||| Sbjct: 24178693 gacgtccgggttcgtggagtacatcgagtccgggcacaagcagggggacatgctgctggt 24178752 Query: 328 cgtccccgagggcgcctacgccgtgcgcctngggcacgaggcgtccatc 376 || || ||||||| ||||||||||||| || |||||||||||||| Sbjct: 24178753 ggtgccgcagggcgcgcacgccgtgcgcctcggcaacgaggcgtccatc 24178801
>dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0410E03 Length = 164839 Score = 99.6 bits (50), Expect = 7e-18 Identities = 94/109 (86%) Strand = Plus / Plus Query: 268 gacgtcggggttcgtggagtacatcccgtcggggcaaaagcagggggacatggtgctggt 327 |||||| |||||||||||||||||| ||| ||||| ||||||||||||||| ||||||| Sbjct: 154515 gacgtccgggttcgtggagtacatcgagtccgggcacaagcagggggacatgctgctggt 154574 Query: 328 cgtccccgagggcgcctacgccgtgcgcctngggcacgaggcgtccatc 376 || || ||||||| ||||||||||||| || |||||||||||||| Sbjct: 154575 ggtgccgcagggcgcgcacgccgtgcgcctcggcaacgaggcgtccatc 154623
>dbj|AP003314.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0046B10 Length = 142596 Score = 99.6 bits (50), Expect = 7e-18 Identities = 94/109 (86%) Strand = Plus / Plus Query: 268 gacgtcggggttcgtggagtacatcccgtcggggcaaaagcagggggacatggtgctggt 327 |||||| |||||||||||||||||| ||| ||||| ||||||||||||||| ||||||| Sbjct: 3257 gacgtccgggttcgtggagtacatcgagtccgggcacaagcagggggacatgctgctggt 3316 Query: 328 cgtccccgagggcgcctacgccgtgcgcctngggcacgaggcgtccatc 376 || || ||||||| ||||||||||||| || |||||||||||||| Sbjct: 3317 ggtgccgcagggcgcgcacgccgtgcgcctcggcaacgaggcgtccatc 3365
>dbj|AK105921.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-A04, full insert sequence Length = 1474 Score = 99.6 bits (50), Expect = 7e-18 Identities = 94/109 (86%) Strand = Plus / Plus Query: 268 gacgtcggggttcgtggagtacatcccgtcggggcaaaagcagggggacatggtgctggt 327 |||||| |||||||||||||||||| ||| ||||| ||||||||||||||| ||||||| Sbjct: 162 gacgtccgggttcgtggagtacatcgagtccgggcacaagcagggggacatgctgctggt 221 Query: 328 cgtccccgagggcgcctacgccgtgcgcctngggcacgaggcgtccatc 376 || || ||||||| ||||||||||||| || |||||||||||||| Sbjct: 222 ggtgccgcagggcgcgcacgccgtgcgcctcggcaacgaggcgtccatc 270 Score = 46.1 bits (23), Expect = 0.093 Identities = 32/35 (91%) Strand = Plus / Plus Query: 165 tcaccgatgggctgctggcgaacggcaacttcgag 199 ||||||| |||||| || ||||||||||||||||| Sbjct: 56 tcaccgacgggctgttgccgaacggcaacttcgag 90
>dbj|AK100501.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099J05, full insert sequence Length = 3062 Score = 99.6 bits (50), Expect = 7e-18 Identities = 94/109 (86%) Strand = Plus / Plus Query: 268 gacgtcggggttcgtggagtacatcccgtcggggcaaaagcagggggacatggtgctggt 327 |||||| |||||||||||||||||| ||| ||||| ||||||||||||||| ||||||| Sbjct: 291 gacgtccgggttcgtggagtacatcgagtccgggcacaagcagggggacatgctgctggt 350 Query: 328 cgtccccgagggcgcctacgccgtgcgcctngggcacgaggcgtccatc 376 || || ||||||| ||||||||||||| || |||||||||||||| Sbjct: 351 ggtgccgcagggcgcgcacgccgtgcgcctcggcaacgaggcgtccatc 399 Score = 46.1 bits (23), Expect = 0.093 Identities = 32/35 (91%) Strand = Plus / Plus Query: 165 tcaccgatgggctgctggcgaacggcaacttcgag 199 ||||||| |||||| || ||||||||||||||||| Sbjct: 185 tcaccgacgggctgttgccgaacggcaacttcgag 219
>dbj|AK072500.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127H12, full insert sequence Length = 1690 Score = 99.6 bits (50), Expect = 7e-18 Identities = 94/109 (86%) Strand = Plus / Plus Query: 268 gacgtcggggttcgtggagtacatcccgtcggggcaaaagcagggggacatggtgctggt 327 |||||| |||||||||||||||||| ||| ||||| ||||||||||||||| ||||||| Sbjct: 291 gacgtccgggttcgtggagtacatcgagtccgggcacaagcagggggacatgctgctggt 350 Query: 328 cgtccccgagggcgcctacgccgtgcgcctngggcacgaggcgtccatc 376 || || ||||||| ||||||||||||| || |||||||||||||| Sbjct: 351 ggtgccgcagggcgcgcacgccgtgcgcctcggcaacgaggcgtccatc 399 Score = 46.1 bits (23), Expect = 0.093 Identities = 32/35 (91%) Strand = Plus / Plus Query: 165 tcaccgatgggctgctggcgaacggcaacttcgag 199 ||||||| |||||| || ||||||||||||||||| Sbjct: 185 tcaccgacgggctgttgccgaacggcaacttcgag 219
>dbj|AK060682.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-E10, full insert sequence Length = 1597 Score = 99.6 bits (50), Expect = 7e-18 Identities = 94/109 (86%) Strand = Plus / Plus Query: 268 gacgtcggggttcgtggagtacatcccgtcggggcaaaagcagggggacatggtgctggt 327 |||||| |||||||||||||||||| ||| ||||| ||||||||||||||| ||||||| Sbjct: 287 gacgtccgggttcgtggagtacatcgagtccgggcacaagcagggggacatgctgctggt 346 Query: 328 cgtccccgagggcgcctacgccgtgcgcctngggcacgaggcgtccatc 376 || || ||||||| ||||||||||||| || |||||||||||||| Sbjct: 347 ggtgccgcagggcgcgcacgccgtgcgcctcggcaacgaggcgtccatc 395 Score = 46.1 bits (23), Expect = 0.093 Identities = 32/35 (91%) Strand = Plus / Plus Query: 165 tcaccgatgggctgctggcgaacggcaacttcgag 199 ||||||| |||||| || ||||||||||||||||| Sbjct: 181 tcaccgacgggctgttgccgaacggcaacttcgag 215
>ref|XM_473015.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1134 Score = 75.8 bits (38), Expect = 1e-10 Identities = 91/109 (83%) Strand = Plus / Plus Query: 275 gggttcgtggagtacatcccgtcggggcaaaagcagggggacatggtgctggtcgtcccc 334 |||||||||||||||||| |||| ||||| |||||||| |||||| ||||| || || Sbjct: 178 gggttcgtggagtacatctcgtccgggcagaagcagggcgacatgctgctgacggtgcca 237 Query: 335 gagggcgcctacgccgtgcgcctngggcacgaggcgtccatcgcgcagc 383 |||||||| |||||||||| || || ||||||| ||||||| ||||| Sbjct: 238 gagggcgcgcacgccgtgcggctgggcaacgaggcctccatcgagcagc 286
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 75.8 bits (38), Expect = 1e-10 Identities = 91/109 (83%) Strand = Plus / Plus Query: 275 gggttcgtggagtacatcccgtcggggcaaaagcagggggacatggtgctggtcgtcccc 334 |||||||||||||||||| |||| ||||| |||||||| |||||| ||||| || || Sbjct: 24702666 gggttcgtggagtacatctcgtccgggcagaagcagggcgacatgctgctgacggtgcca 24702725 Query: 335 gagggcgcctacgccgtgcgcctngggcacgaggcgtccatcgcgcagc 383 |||||||| |||||||||| || || ||||||| ||||||| ||||| Sbjct: 24702726 gagggcgcgcacgccgtgcggctgggcaacgaggcctccatcgagcagc 24702774 Score = 61.9 bits (31), Expect = 2e-06 Identities = 84/102 (82%) Strand = Plus / Plus Query: 275 gggttcgtggagtacatcccgtcggggcaaaagcagggggacatggtgctggtcgtcccc 334 |||||||||||||||||| |||||| || |||||||| |||||| | ||| || || Sbjct: 24716692 gggttcgtggagtacatcgggtcgggccagaagcagggagacatgctcctgccggtgccg 24716751 Query: 335 gagggcgcctacgccgtgcgcctngggcacgaggcgtccatc 376 |||||||| ||||||||||| || || ||||||| |||||| Sbjct: 24716752 gagggcgcgtacgccgtgcggctgggcaacgaggcctccatc 24716793 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 275 gggttcgtggagtacatcccgtcggggcaaaagcagggggacatggtgctggtcgtcccc 334 |||||||||||||||||| ||| ||||| ||| || ||||||| | |||| || || Sbjct: 24727261 gggttcgtggagtacatcgggtccgggcacaaggagcaggacatgatcctggcggtgccg 24727320 Query: 335 gagggcgcctacgccgtgcgcct 357 |||||||| |||||||||||||| Sbjct: 24727321 gagggcgcgtacgccgtgcgcct 24727343 Score = 54.0 bits (27), Expect = 4e-04 Identities = 83/102 (81%) Strand = Plus / Plus Query: 275 gggttcgtggagtacatcccgtcggggcaaaagcagggggacatggtgctggtcgtcccc 334 |||||||||||||||||| |||||| || | |||||| |||||| | ||| || || Sbjct: 24720408 gggttcgtggagtacatcgggtcgggccagatgcagggtgacatgctcctgccggtgccg 24720467 Query: 335 gagggcgcctacgccgtgcgcctngggcacgaggcgtccatc 376 |||||||| ||||||||||| || || ||||||| |||||| Sbjct: 24720468 gagggcgcgtacgccgtgcggctgggcaacgaggcctccatc 24720509 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 272 tcggggttcgtggagtacatc 292 ||||||||||||||||||||| Sbjct: 24722610 tcggggttcgtggagtacatc 24722630 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 tcggggttcgtggagtacat 291 |||||||||||||||||||| Sbjct: 24730217 tcggggttcgtggagtacat 24730236 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 185 aacggcaacttcgagcgcgggccg 208 |||||||||||||||| ||||||| Sbjct: 24727202 aacggcaacttcgagcacgggccg 24727225
>dbj|AK110895.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-A05, full insert sequence Length = 1499 Score = 75.8 bits (38), Expect = 1e-10 Identities = 91/109 (83%) Strand = Plus / Plus Query: 275 gggttcgtggagtacatcccgtcggggcaaaagcagggggacatggtgctggtcgtcccc 334 |||||||||||||||||| |||| ||||| |||||||| |||||| ||||| || || Sbjct: 309 gggttcgtggagtacatctcgtccgggcagaagcagggcgacatgctgctgacggtgcca 368 Query: 335 gagggcgcctacgccgtgcgcctngggcacgaggcgtccatcgcgcagc 383 |||||||| |||||||||| || || ||||||| ||||||| ||||| Sbjct: 369 gagggcgcgcacgccgtgcggctgggcaacgaggcctccatcgagcagc 417
>emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0091E11, complete sequence Length = 133856 Score = 75.8 bits (38), Expect = 1e-10 Identities = 91/109 (83%) Strand = Plus / Plus Query: 275 gggttcgtggagtacatcccgtcggggcaaaagcagggggacatggtgctggtcgtcccc 334 |||||||||||||||||| |||| ||||| |||||||| |||||| ||||| || || Sbjct: 92189 gggttcgtggagtacatctcgtccgggcagaagcagggcgacatgctgctgacggtgcca 92248 Query: 335 gagggcgcctacgccgtgcgcctngggcacgaggcgtccatcgcgcagc 383 |||||||| |||||||||| || || ||||||| ||||||| ||||| Sbjct: 92249 gagggcgcgcacgccgtgcggctgggcaacgaggcctccatcgagcagc 92297 Score = 61.9 bits (31), Expect = 2e-06 Identities = 84/102 (82%) Strand = Plus / Plus Query: 275 gggttcgtggagtacatcccgtcggggcaaaagcagggggacatggtgctggtcgtcccc 334 |||||||||||||||||| |||||| || |||||||| |||||| | ||| || || Sbjct: 106215 gggttcgtggagtacatcgggtcgggccagaagcagggagacatgctcctgccggtgccg 106274 Query: 335 gagggcgcctacgccgtgcgcctngggcacgaggcgtccatc 376 |||||||| ||||||||||| || || ||||||| |||||| Sbjct: 106275 gagggcgcgtacgccgtgcggctgggcaacgaggcctccatc 106316 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 275 gggttcgtggagtacatcccgtcggggcaaaagcagggggacatggtgctggtcgtcccc 334 |||||||||||||||||| ||| ||||| ||| || ||||||| | |||| || || Sbjct: 116784 gggttcgtggagtacatcgggtccgggcacaaggagcaggacatgatcctggcggtgccg 116843 Query: 335 gagggcgcctacgccgtgcgcct 357 |||||||| |||||||||||||| Sbjct: 116844 gagggcgcgtacgccgtgcgcct 116866 Score = 54.0 bits (27), Expect = 4e-04 Identities = 83/102 (81%) Strand = Plus / Plus Query: 275 gggttcgtggagtacatcccgtcggggcaaaagcagggggacatggtgctggtcgtcccc 334 |||||||||||||||||| |||||| || | |||||| |||||| | ||| || || Sbjct: 109931 gggttcgtggagtacatcgggtcgggccagatgcagggtgacatgctcctgccggtgccg 109990 Query: 335 gagggcgcctacgccgtgcgcctngggcacgaggcgtccatc 376 |||||||| ||||||||||| || || ||||||| |||||| Sbjct: 109991 gagggcgcgtacgccgtgcggctgggcaacgaggcctccatc 110032 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 272 tcggggttcgtggagtacatc 292 ||||||||||||||||||||| Sbjct: 112133 tcggggttcgtggagtacatc 112153 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 tcggggttcgtggagtacat 291 |||||||||||||||||||| Sbjct: 119740 tcggggttcgtggagtacat 119759 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 185 aacggcaacttcgagcgcgggccg 208 |||||||||||||||| ||||||| Sbjct: 116725 aacggcaacttcgagcacgggccg 116748
>ref|XM_473018.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1122 Score = 61.9 bits (31), Expect = 2e-06 Identities = 84/102 (82%) Strand = Plus / Plus Query: 275 gggttcgtggagtacatcccgtcggggcaaaagcagggggacatggtgctggtcgtcccc 334 |||||||||||||||||| |||||| || |||||||| |||||| | ||| || || Sbjct: 187 gggttcgtggagtacatcgggtcgggccagaagcagggagacatgctcctgccggtgccg 246 Query: 335 gagggcgcctacgccgtgcgcctngggcacgaggcgtccatc 376 |||||||| ||||||||||| || || ||||||| |||||| Sbjct: 247 gagggcgcgtacgccgtgcggctgggcaacgaggcctccatc 288 Score = 48.1 bits (24), Expect = 0.024 Identities = 33/36 (91%) Strand = Plus / Plus Query: 164 atcaccgatgggctgctggcgaacggcaacttcgag 199 ||||||||||| |||||| |||| |||||||||||| Sbjct: 76 atcaccgatggcctgctgccgaatggcaacttcgag 111
>dbj|AK072539.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133J23, full insert sequence Length = 1588 Score = 61.9 bits (31), Expect = 2e-06 Identities = 84/102 (82%) Strand = Plus / Plus Query: 275 gggttcgtggagtacatcccgtcggggcaaaagcagggggacatggtgctggtcgtcccc 334 |||||||||||||||||| |||||| || |||||||| |||||| | ||| || || Sbjct: 591 gggttcgtggagtacatcgggtcgggccagaagcagggagacatgctcctgccggtgccg 650 Query: 335 gagggcgcctacgccgtgcgcctngggcacgaggcgtccatc 376 |||||||| ||||||||||| || || ||||||| |||||| Sbjct: 651 gagggcgcgtacgccgtgcggctgggcaacgaggcctccatc 692 Score = 48.1 bits (24), Expect = 0.024 Identities = 33/36 (91%) Strand = Plus / Plus Query: 164 atcaccgatgggctgctggcgaacggcaacttcgag 199 ||||||||||| |||||| |||| |||||||||||| Sbjct: 480 atcaccgatggcctgctgccgaatggcaacttcgag 515
>dbj|AK063925.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-C04, full insert sequence Length = 1517 Score = 61.9 bits (31), Expect = 2e-06 Identities = 84/102 (82%) Strand = Plus / Plus Query: 275 gggttcgtggagtacatcccgtcggggcaaaagcagggggacatggtgctggtcgtcccc 334 |||||||||||||||||| |||||| || |||||||| |||||| | ||| || || Sbjct: 300 gggttcgtggagtacatcgggtcgggccagaagcagggagacatgctcctgccggtgccg 359 Query: 335 gagggcgcctacgccgtgcgcctngggcacgaggcgtccatc 376 |||||||| ||||||||||| || || ||||||| |||||| Sbjct: 360 gagggcgcgtacgccgtgcggctgggcaacgaggcctccatc 401 Score = 48.1 bits (24), Expect = 0.024 Identities = 33/36 (91%) Strand = Plus / Plus Query: 164 atcaccgatgggctgctggcgaacggcaacttcgag 199 ||||||||||| |||||| |||| |||||||||||| Sbjct: 189 atcaccgatggcctgctgccgaatggcaacttcgag 224
>ref|XM_473019.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1116 Score = 54.0 bits (27), Expect = 4e-04 Identities = 83/102 (81%) Strand = Plus / Plus Query: 275 gggttcgtggagtacatcccgtcggggcaaaagcagggggacatggtgctggtcgtcccc 334 |||||||||||||||||| |||||| || | |||||| |||||| | ||| || || Sbjct: 181 gggttcgtggagtacatcgggtcgggccagatgcagggtgacatgctcctgccggtgccg 240 Query: 335 gagggcgcctacgccgtgcgcctngggcacgaggcgtccatc 376 |||||||| ||||||||||| || || ||||||| |||||| Sbjct: 241 gagggcgcgtacgccgtgcggctgggcaacgaggcctccatc 282
>dbj|AK073892.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076M24, full insert sequence Length = 1599 Score = 54.0 bits (27), Expect = 4e-04 Identities = 83/102 (81%) Strand = Plus / Plus Query: 275 gggttcgtggagtacatcccgtcggggcaaaagcagggggacatggtgctggtcgtcccc 334 |||||||||||||||||| |||||| || | |||||| |||||| | ||| || || Sbjct: 302 gggttcgtggagtacatcgggtcgggccagatgcagggtgacatgctcctgccggtgccg 361 Query: 335 gagggcgcctacgccgtgcgcctngggcacgaggcgtccatc 376 |||||||| ||||||||||| || || ||||||| |||||| Sbjct: 362 gagggcgcgtacgccgtgcggctgggcaacgaggcctccatc 403
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 211 gccgtcgcagctgcgcgggacgcagg 236 |||||||||||||||| ||||||||| Sbjct: 3584376 gccgtcgcagctgcgccggacgcagg 3584401
>ref|XM_473020.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1119 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 272 tcggggttcgtggagtacatc 292 ||||||||||||||||||||| Sbjct: 184 tcggggttcgtggagtacatc 204
>ref|XM_808068.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053508323.20) partial mRNA Length = 1788 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 215 tcgcagctgcgcgggacgcaggtgg 239 |||||| |||||||||||||||||| Sbjct: 97 tcgcagttgcgcgggacgcaggtgg 121
>ref|XM_473021.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 207 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 185 aacggcaacttcgagcgcgggccg 208 |||||||||||||||| ||||||| Sbjct: 103 aacggcaacttcgagcacgggccg 126
>gb|AC132919.9| Mus musculus chromosome 12, clone RP24-356H3, complete sequence Length = 163965 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 302 caaaagcagggggacatggtgctg 325 |||||||||||||||| ||||||| Sbjct: 15556 caaaagcagggggacaaggtgctg 15533
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 cgtctccgcggcgcggtccc 402 |||||||||||||||||||| Sbjct: 12425615 cgtctccgcggcgcggtccc 12425596
>gb|AY466471.1| Oryza sativa (japonica cultivar-group) bZIP transcription factor RF2b (RF2b) mRNA, complete cds Length = 1497 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 cgtctccgcggcgcggtccc 402 |||||||||||||||||||| Sbjct: 411 cgtctccgcggcgcggtccc 392
>ref|XM_752807.1| Ustilago maydis 521 hypothetical protein (UM01753.1) partial mRNA Length = 1020 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 tggcaaggtcagccatgtccgggc 119 ||||||||||||||| |||||||| Sbjct: 70 tggcaaggtcagccaggtccgggc 93
>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0098H14, complete sequence Length = 132560 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 cgtctccgcggcgcggtccc 402 |||||||||||||||||||| Sbjct: 84633 cgtctccgcggcgcggtccc 84614
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 204 ggccgcagccgtcgcagctgcgcg 227 ||||||||||| |||||||||||| Sbjct: 232864 ggccgcagccggcgcagctgcgcg 232887
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 gcagccgtcgcagctgcgcg 227 |||||||||||||||||||| Sbjct: 1352922 gcagccgtcgcagctgcgcg 1352941
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 cgtctccgcggcgcggtccc 402 |||||||||||||||||||| Sbjct: 12422378 cgtctccgcggcgcggtccc 12422359
>dbj|AB096929.1| Prototheca ulmea gene for 18S rRNA, partial sequence Length = 1787 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 ctccgcggcgcggtccccgg 405 |||||||||||||||||||| Sbjct: 638 ctccgcggcgcggtccccgg 657
>dbj|AK070466.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052D02, full insert sequence Length = 1612 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 cgtctccgcggcgcggtccc 402 |||||||||||||||||||| Sbjct: 329 cgtctccgcggcgcggtccc 310
>dbj|AK059473.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-E05, full insert sequence Length = 1575 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 cgtctccgcggcgcggtccc 402 |||||||||||||||||||| Sbjct: 411 cgtctccgcggcgcggtccc 392
>gb|AC132587.5| Mus musculus BAC clone RP24-372N16 from 12, complete sequence Length = 181443 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 302 caaaagcagggggacatggtgctg 325 |||||||||||||||| ||||||| Sbjct: 47954 caaaagcagggggacaaggtgctg 47977
>gb|AC125067.4| Mus musculus BAC clone RP23-431C5 from 12, complete sequence Length = 192938 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 302 caaaagcagggggacatggtgctg 325 |||||||||||||||| ||||||| Sbjct: 13997 caaaagcagggggacaaggtgctg 13974 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,135,341 Number of Sequences: 3902068 Number of extensions: 2135341 Number of successful extensions: 40559 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40067 Number of HSP's gapped (non-prelim): 483 length of query: 429 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 407 effective length of database: 17,147,199,772 effective search space: 6978910307204 effective search space used: 6978910307204 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
