ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast55f05 |
|---|---|
| Clone Library Name | barley_pub |
>STAD_ORYSA (Q40731) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 390 Score = 47.4 bits (111), Expect = 1e-05 Identities = 20/37 (54%), Positives = 25/37 (67%) Frame = +2 Query: 239 VPREQAEMVQSLNGWVAENMLPLLSPVESSWQPHDFL 349 +P ++ E+ SL W EN+L LL PVE SWQP DFL Sbjct: 59 LPPQKREIFDSLQPWAKENLLNLLKPVEKSWQPQDFL 95
>STAD_SPIOL (P28645) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 399 Score = 47.4 bits (111), Expect = 1e-05 Identities = 19/37 (51%), Positives = 26/37 (70%) Frame = +2 Query: 239 VPREQAEMVQSLNGWVAENMLPLLSPVESSWQPHDFL 349 +P+E+ E+ +SL GW EN+L L PVE WQP D+L Sbjct: 68 MPQEKIEIFKSLEGWAEENLLVHLKPVEKCWQPQDYL 104
>STAD_SIMCH (Q01753) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 398 Score = 45.8 bits (107), Expect = 4e-05 Identities = 19/37 (51%), Positives = 25/37 (67%) Frame = +2 Query: 239 VPREQAEMVQSLNGWVAENMLPLLSPVESSWQPHDFL 349 +P ++ E+ +SL GW EN+L L PVE WQP DFL Sbjct: 67 MPPQKIEIFKSLEGWAEENVLVHLKPVEKCWQPQDFL 103
>STAD_SOYBN (Q42807) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 411 Score = 45.1 bits (105), Expect = 7e-05 Identities = 19/37 (51%), Positives = 24/37 (64%) Frame = +2 Query: 239 VPREQAEMVQSLNGWVAENMLPLLSPVESSWQPHDFL 349 +P ++ E+ QSL W EN+L L PVE WQP DFL Sbjct: 60 MPPQKIEIFQSLEDWAEENILAHLKPVEKCWQPQDFL 96
>STAD_SOLTU (P46253) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 393 Score = 44.3 bits (103), Expect = 1e-04 Identities = 19/37 (51%), Positives = 24/37 (64%) Frame = +2 Query: 239 VPREQAEMVQSLNGWVAENMLPLLSPVESSWQPHDFL 349 +P E+ E+ SL W A+N+L L PVE WQP DFL Sbjct: 62 MPPEKIEVFDSLRDWAAQNLLVHLKPVEKCWQPTDFL 98
>STAD_RICCO (P22337) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) (Delta(9) stearoyl-acyl carrier protein desaturase) Length = 396 Score = 43.9 bits (102), Expect = 2e-04 Identities = 18/37 (48%), Positives = 25/37 (67%) Frame = +2 Query: 239 VPREQAEMVQSLNGWVAENMLPLLSPVESSWQPHDFL 349 +P ++ E+ +SL+ W EN+L L PVE WQP DFL Sbjct: 65 MPPQKIEIFKSLDNWAEENILVHLKPVEKCWQPQDFL 101
>STAD_CUCSA (P32061) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 396 Score = 43.1 bits (100), Expect = 3e-04 Identities = 18/37 (48%), Positives = 24/37 (64%) Frame = +2 Query: 239 VPREQAEMVQSLNGWVAENMLPLLSPVESSWQPHDFL 349 +P ++ E+ +SL W EN+L L PVE WQP DFL Sbjct: 65 MPPQKMEIFKSLEDWAEENLLVHLKPVERCWQPQDFL 101
>STAD_GOSHI (Q42770) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 397 Score = 42.7 bits (99), Expect = 4e-04 Identities = 18/37 (48%), Positives = 23/37 (62%) Frame = +2 Query: 239 VPREQAEMVQSLNGWVAENMLPLLSPVESSWQPHDFL 349 +P + E+ +SL GW N+L L PVE WQP DFL Sbjct: 65 MPPHKIEIFKSLEGWAENNILTHLKPVEKCWQPADFL 101
>STAD_OLEEU (Q43593) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 390 Score = 42.4 bits (98), Expect = 5e-04 Identities = 18/34 (52%), Positives = 22/34 (64%) Frame = +2 Query: 248 EQAEMVQSLNGWVAENMLPLLSPVESSWQPHDFL 349 E+ E+ SLN W EN+L LL V+ WQP DFL Sbjct: 62 EKREIFNSLNNWAQENILVLLKDVDKCWQPSDFL 95
>STAD_SOLCO (Q41319) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 393 Score = 41.2 bits (95), Expect = 0.001 Identities = 18/37 (48%), Positives = 23/37 (62%) Frame = +2 Query: 239 VPREQAEMVQSLNGWVAENMLPLLSPVESSWQPHDFL 349 +P E+ E+ SL+GW N+L L PVE WQ DFL Sbjct: 62 MPPEKREIFDSLHGWADNNILVHLKPVEKCWQASDFL 98
>STAD_ELAGV (O24428) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 393 Score = 41.2 bits (95), Expect = 0.001 Identities = 17/37 (45%), Positives = 23/37 (62%) Frame = +2 Query: 239 VPREQAEMVQSLNGWVAENMLPLLSPVESSWQPHDFL 349 +P ++ E+ +SL W N+L L PVE WQP DFL Sbjct: 62 MPPQKIEIFKSLEDWAENNILVHLKPVEKCWQPQDFL 98
>STAD_BRANA (P29108) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 398 Score = 41.2 bits (95), Expect = 0.001 Identities = 16/37 (43%), Positives = 24/37 (64%) Frame = +2 Query: 239 VPREQAEMVQSLNGWVAENMLPLLSPVESSWQPHDFL 349 +P ++ E+ +S+ W +N+L L VE SWQP DFL Sbjct: 67 MPPQKIEIFKSMEDWAEQNLLTQLKDVEKSWQPQDFL 103
>STAD_CARTI (P22243) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 396 Score = 40.8 bits (94), Expect = 0.001 Identities = 16/37 (43%), Positives = 24/37 (64%) Frame = +2 Query: 239 VPREQAEMVQSLNGWVAENMLPLLSPVESSWQPHDFL 349 +P ++ E+ +S+ GW +N+L L PVE WQ DFL Sbjct: 65 MPPQKIEIFKSIEGWAEQNILVHLKPVEKCWQAQDFL 101
>STAD_HELAN (Q96456) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 396 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/64 (35%), Positives = 30/64 (46%) Frame = +2 Query: 239 VPREQAEMVQSLNGWVAENMLPLLSPVESSWQPHDFLXXXXXXXXXXXXXXXXXFMEGVA 418 +P ++ E+ +S+ GW N+L L PVE WQ DFL FME V Sbjct: 65 MPPQKIEIFKSMEGWAENNILVHLKPVEKCWQAQDFL----------PDPASDGFMEQVE 114 Query: 419 ALRA 430 LRA Sbjct: 115 ELRA 118
>STAD_CORSA (P32063) Omega-12 acyl-[acyl-carrier-protein] desaturase,| chloroplast precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 385 Score = 40.0 bits (92), Expect = 0.002 Identities = 17/34 (50%), Positives = 22/34 (64%) Frame = +2 Query: 248 EQAEMVQSLNGWVAENMLPLLSPVESSWQPHDFL 349 E E+ SL GW +N+L L VE+SWQP D+L Sbjct: 56 EVDELFNSLEGWARDNILVHLKSVENSWQPQDYL 89
>STADS_BRANA (Q01771) Acyl-[acyl-carrier-protein] desaturase, seed specific,| chloroplast precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 399 Score = 38.5 bits (88), Expect = 0.007 Identities = 16/37 (43%), Positives = 24/37 (64%) Frame = +2 Query: 239 VPREQAEMVQSLNGWVAENMLPLLSPVESSWQPHDFL 349 +P ++ E+ +S+ +N+LP L VE SWQP DFL Sbjct: 68 MPPQKIEIFKSMEDRAEQNLLPHLKDVEKSWQPQDFL 104
>VIE2_HCMVA (P19893) 45 kDa immediate-early protein 2 (IE2) (UL122 protein)| Length = 580 Score = 31.2 bits (69), Expect = 1.1 Identities = 26/90 (28%), Positives = 33/90 (36%) Frame = -2 Query: 327 EDSTGLSSGSMFSATQPFSDCTISACSRGTGANPTSMXXXXXXXXXXXXXXXXXXXLHPE 148 EDS+ SS S SA+ S+ CS G GA+ TS H Sbjct: 256 EDSSSSSSSSCSSASDSESESEEMKCSSGGGASVTS-SHHGRGGFGGAASSSLLSCGHQS 314 Query: 147 FAGRSVHPRRVALPEPASLLLEKKKQIFAD 58 G S PR+ + L EK + I D Sbjct: 315 SGGASTGPRKKKSKRISELDNEKVRNIMKD 344
>PININ_CANFA (P79149) Pinin| Length = 773 Score = 29.6 bits (65), Expect = 3.2 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%) Frame = -2 Query: 429 ARSAATPSMKADRASSSDAPGGAAEHGRKSCGCHEDSTGLSSGS--MFSATQPFSDCTIS 256 +RS ++ S + +S+S + GG++ G S S+ +SGS S++ S Sbjct: 629 SRSRSSSSSSSSSSSTSSSSGGSSSSGSSSSRSSSSSSSSTSGSSRRDSSSSTTSSSESR 688 Query: 255 ACSRGTGAN 229 + SRG G N Sbjct: 689 SRSRGRGHN 697
>PHY_ADICA (P42496) Phytochrome 1| Length = 1118 Score = 28.9 bits (63), Expect = 5.4 Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 3/74 (4%) Frame = -2 Query: 333 CHEDSTGLSSGSMFSATQPFSDCTISACSRGTGANPTSMXXXXXXXXXXXXXXXXXXXLH 154 CH+DSTGLS+ S+ P + C A A T+ H Sbjct: 467 CHKDSTGLSTDSLAKTGYPEASCLGDAVCGLAAAKITATDFLFWFRSHTAKEVRWGGARH 526 Query: 153 -PEFA--GRSVHPR 121 PE GR +HPR Sbjct: 527 DPEERDDGRRMHPR 540
>PPRB_HUMAN (Q15648) Peroxisome proliferator-activated receptor-binding protein| (PBP) (PPAR-binding protein) (Thyroid hormone receptor-associated protein complex 220 kDa component) (Trap220) (Thyroid receptor-interacting protein 2) (TRIP-2) (p53 regulator Length = 1581 Score = 28.5 bits (62), Expect = 7.1 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Frame = -2 Query: 411 PSMKADRASSSDAPGGAAEHGRKSCGCHEDSTGLSS-GSMFSATQPFSD-CTISACSRGT 238 PS KA SS + GG+ G S + S+GL S GS+ T P S+ CT S+ S + Sbjct: 1217 PSSKAKSPISSGS-GGSHMSGTSSSSGMKSSSGLGSSGSLSQKTPPSSNSCTASSSSFSS 1275 Query: 237 GANPTS 220 + S Sbjct: 1276 SGSSMS 1281
>Y1699_PYRHO (O59362) UPF0095 protein PH1699| Length = 447 Score = 28.5 bits (62), Expect = 7.1 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = -2 Query: 108 PEPASLLLEKKKQIFADVHAAGPVFAID 25 P+P +LLL++ K I A+VH + AI+ Sbjct: 368 PDPVALLLDENKNIIAEVHTRDLLNAIE 395
>UPL2_ARATH (Q8H0T4) E3 ubiquitin protein ligase UPL2 (EC 6.3.2.-)| (Ubiquitin-protein ligase 2) Length = 3658 Score = 28.1 bits (61), Expect = 9.2 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +2 Query: 218 IDVGFAPVPREQAEMVQSLNGWVAENMLPL 307 + +G PVPRE V++L V E +LP+ Sbjct: 1192 LSIGLFPVPREPETFVRNLQSQVLEVILPI 1221 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.134 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,550,783 Number of Sequences: 219361 Number of extensions: 535439 Number of successful extensions: 1853 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 1781 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1850 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
