ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast55f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DGKQ_HUMAN (P52824) Diacylglycerol kinase theta (EC 2.7.1.107) (... 33 0.31
2CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloropla... 29 5.8
3TRPG_PYRKO (Q9YGB2) Anthranilate synthase component II (EC 4.1.3... 28 9.9

>DGKQ_HUMAN (P52824) Diacylglycerol kinase theta (EC 2.7.1.107) (Diglyceride|
           kinase theta) (DGK-theta) (DAG kinase theta)
          Length = 942

 Score = 33.1 bits (74), Expect = 0.31
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
 Frame = +2

Query: 104 PAVDRLAVCNLLSGACHVLPPLRCDWFFDYFGTSAHAVLTGADCCPDDG----QRQALDP 271
           P+  R  VC    G+  VL  +RC+W     G  AH+ L  A   P+ G    +   L P
Sbjct: 192 PSGARCEVCRKTCGSSDVLAGVRCEW----CGVQAHS-LCSAALAPECGFGRLRSLVLPP 246

Query: 272 ASFKVLVVGVSDDRRRYVLRTFSSGEPG 355
           A  ++L  G S  +   ++     GE G
Sbjct: 247 ACVRLLPGGFSKTQSFRIVEAAEPGEGG 274



to top

>CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 256

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 25/61 (40%), Positives = 32/61 (52%)
 Frame = +2

Query: 248 GQRQALDPASFKVLVVGVSDDRRRYVLRTFSSGEPGWSAPSECFDPVERGIFGPFSGAAP 427
           GQ   L P++ ++ V  VS   R+   +T SSG P W  P    D V+    GPFSG AP
Sbjct: 15  GQAMKLAPSTPELGVGRVS--MRKTAPKTVSSGSP-WYGP----DRVK--YLGPFSGEAP 65

Query: 428 S 430
           S
Sbjct: 66  S 66



to top

>TRPG_PYRKO (Q9YGB2) Anthranilate synthase component II (EC 4.1.3.27)|
           (Glutamine amido-transferase)
          Length = 192

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 438 VAHDGAAPLNGPKMPRSTGSKHSLGALQ 355
           V HDG   L G K P + G  HSL  L+
Sbjct: 105 VKHDGKGVLRGIKNPLTAGRYHSLAVLE 132


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,586,717
Number of Sequences: 219361
Number of extensions: 609163
Number of successful extensions: 1930
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1930
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top