| Clone Name | bast55f02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_550012.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1990 Score = 391 bits (197), Expect = e-105 Identities = 317/357 (88%) Strand = Plus / Minus Query: 2 ttctacccgttctcaagggaccacgccaacttcgcctcggcgaggcaggagctgtaccag 61 |||||||||||||| |||||||| ||||||||||| ||| |||||||||||||||| | Sbjct: 797 ttctacccgttctccagggaccatgccaacttcgcgtcgccgaggcaggagctgtatgtg 738 Query: 62 tgggagtccgtggcgaggtcggcgcggaacgcgctcggcatgcggtacaggatgctcccg 121 |||||||||||||| | |||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 737 tgggagtccgtggccaagtcggctcggaacgcgctcggcatgcggtacaggctgctccct 678 Query: 122 tacctgtacacgctcaactaccaggcgcacctcaccggcgctcccgtggcgcggccgctc 181 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| | Sbjct: 677 tacctgtacacgctcaactaccaggcgcatctcaccggcgctccggtggcgcggccggtg 618 Query: 182 ttcttctcgttcccggacttcgcgccgtgctacggcgtgagcaaccagttcctactcggc 241 ||||||||||||||||||||| ||||||||||||| |||||| |||| ||| |||||| Sbjct: 617 ttcttctcgttcccggacttcacgccgtgctacgggctgagcacgcagtacctgctcggc 558 Query: 242 gccggcgtcatggtgtccccggtcctcgagcagggcgccagctccgtggacgcggtgttc 301 || ||||||||||||| ||||| |||||||||||||||| ||| ||| ||| ||||| Sbjct: 557 gcgagcgtcatggtgtcgccggtgctcgagcagggcgccacctcggtgagcgccatgttc 498 Query: 302 ccgccgggcacgtggtacaacctgttcgacacaagcaaggcggtggtgtccacgggc 358 |||||||| | |||||||||||||||||||| | ||||| ||||||||||| |||| Sbjct: 497 ccgccggggagctggtacaacctgttcgacacgaccaaggtggtggtgtccaggggc 441
>ref|NM_184232.2| Oryza sativa (japonica cultivar-group), mRNA Length = 3193 Score = 391 bits (197), Expect = e-105 Identities = 317/357 (88%) Strand = Plus / Plus Query: 2 ttctacccgttctcaagggaccacgccaacttcgcctcggcgaggcaggagctgtaccag 61 |||||||||||||| |||||||| ||||||||||| ||| |||||||||||||||| | Sbjct: 2111 ttctacccgttctccagggaccatgccaacttcgcgtcgccgaggcaggagctgtatgtg 2170 Query: 62 tgggagtccgtggcgaggtcggcgcggaacgcgctcggcatgcggtacaggatgctcccg 121 |||||||||||||| | |||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 2171 tgggagtccgtggccaagtcggctcggaacgcgctcggcatgcggtacaggctgctccct 2230 Query: 122 tacctgtacacgctcaactaccaggcgcacctcaccggcgctcccgtggcgcggccgctc 181 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| | Sbjct: 2231 tacctgtacacgctcaactaccaggcgcatctcaccggcgctccggtggcgcggccggtg 2290 Query: 182 ttcttctcgttcccggacttcgcgccgtgctacggcgtgagcaaccagttcctactcggc 241 ||||||||||||||||||||| ||||||||||||| |||||| |||| ||| |||||| Sbjct: 2291 ttcttctcgttcccggacttcacgccgtgctacgggctgagcacgcagtacctgctcggc 2350 Query: 242 gccggcgtcatggtgtccccggtcctcgagcagggcgccagctccgtggacgcggtgttc 301 || ||||||||||||| ||||| |||||||||||||||| ||| ||| ||| ||||| Sbjct: 2351 gcgagcgtcatggtgtcgccggtgctcgagcagggcgccacctcggtgagcgccatgttc 2410 Query: 302 ccgccgggcacgtggtacaacctgttcgacacaagcaaggcggtggtgtccacgggc 358 |||||||| | |||||||||||||||||||| | ||||| ||||||||||| |||| Sbjct: 2411 ccgccggggagctggtacaacctgttcgacacgaccaaggtggtggtgtccaggggc 2467
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 391 bits (197), Expect = e-105 Identities = 317/357 (88%) Strand = Plus / Plus Query: 2 ttctacccgttctcaagggaccacgccaacttcgcctcggcgaggcaggagctgtaccag 61 |||||||||||||| |||||||| ||||||||||| ||| |||||||||||||||| | Sbjct: 1700716 ttctacccgttctccagggaccatgccaacttcgcgtcgccgaggcaggagctgtatgtg 1700775 Query: 62 tgggagtccgtggcgaggtcggcgcggaacgcgctcggcatgcggtacaggatgctcccg 121 |||||||||||||| | |||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 1700776 tgggagtccgtggccaagtcggctcggaacgcgctcggcatgcggtacaggctgctccct 1700835 Query: 122 tacctgtacacgctcaactaccaggcgcacctcaccggcgctcccgtggcgcggccgctc 181 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| | Sbjct: 1700836 tacctgtacacgctcaactaccaggcgcatctcaccggcgctccggtggcgcggccggtg 1700895 Query: 182 ttcttctcgttcccggacttcgcgccgtgctacggcgtgagcaaccagttcctactcggc 241 ||||||||||||||||||||| ||||||||||||| |||||| |||| ||| |||||| Sbjct: 1700896 ttcttctcgttcccggacttcacgccgtgctacgggctgagcacgcagtacctgctcggc 1700955 Query: 242 gccggcgtcatggtgtccccggtcctcgagcagggcgccagctccgtggacgcggtgttc 301 || ||||||||||||| ||||| |||||||||||||||| ||| ||| ||| ||||| Sbjct: 1700956 gcgagcgtcatggtgtcgccggtgctcgagcagggcgccacctcggtgagcgccatgttc 1701015 Query: 302 ccgccgggcacgtggtacaacctgttcgacacaagcaaggcggtggtgtccacgggc 358 |||||||| | |||||||||||||||||||| | ||||| ||||||||||| |||| Sbjct: 1701016 ccgccggggagctggtacaacctgttcgacacgaccaaggtggtggtgtccaggggc 1701072
>dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0504H10 Length = 143515 Score = 391 bits (197), Expect = e-105 Identities = 317/357 (88%) Strand = Plus / Plus Query: 2 ttctacccgttctcaagggaccacgccaacttcgcctcggcgaggcaggagctgtaccag 61 |||||||||||||| |||||||| ||||||||||| ||| |||||||||||||||| | Sbjct: 43059 ttctacccgttctccagggaccatgccaacttcgcgtcgccgaggcaggagctgtatgtg 43118 Query: 62 tgggagtccgtggcgaggtcggcgcggaacgcgctcggcatgcggtacaggatgctcccg 121 |||||||||||||| | |||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 43119 tgggagtccgtggccaagtcggctcggaacgcgctcggcatgcggtacaggctgctccct 43178 Query: 122 tacctgtacacgctcaactaccaggcgcacctcaccggcgctcccgtggcgcggccgctc 181 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| | Sbjct: 43179 tacctgtacacgctcaactaccaggcgcatctcaccggcgctccggtggcgcggccggtg 43238 Query: 182 ttcttctcgttcccggacttcgcgccgtgctacggcgtgagcaaccagttcctactcggc 241 ||||||||||||||||||||| ||||||||||||| |||||| |||| ||| |||||| Sbjct: 43239 ttcttctcgttcccggacttcacgccgtgctacgggctgagcacgcagtacctgctcggc 43298 Query: 242 gccggcgtcatggtgtccccggtcctcgagcagggcgccagctccgtggacgcggtgttc 301 || ||||||||||||| ||||| |||||||||||||||| ||| ||| ||| ||||| Sbjct: 43299 gcgagcgtcatggtgtcgccggtgctcgagcagggcgccacctcggtgagcgccatgttc 43358 Query: 302 ccgccgggcacgtggtacaacctgttcgacacaagcaaggcggtggtgtccacgggc 358 |||||||| | |||||||||||||||||||| | ||||| ||||||||||| |||| Sbjct: 43359 ccgccggggagctggtacaacctgttcgacacgaccaaggtggtggtgtccaggggc 43415
>dbj|AK102309.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090B18, full insert sequence Length = 3486 Score = 391 bits (197), Expect = e-105 Identities = 317/357 (88%) Strand = Plus / Plus Query: 2 ttctacccgttctcaagggaccacgccaacttcgcctcggcgaggcaggagctgtaccag 61 |||||||||||||| |||||||| ||||||||||| ||| |||||||||||||||| | Sbjct: 2112 ttctacccgttctccagggaccatgccaacttcgcgtcgccgaggcaggagctgtatgtg 2171 Query: 62 tgggagtccgtggcgaggtcggcgcggaacgcgctcggcatgcggtacaggatgctcccg 121 |||||||||||||| | |||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 2172 tgggagtccgtggccaagtcggctcggaacgcgctcggcatgcggtacaggctgctccct 2231 Query: 122 tacctgtacacgctcaactaccaggcgcacctcaccggcgctcccgtggcgcggccgctc 181 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| | Sbjct: 2232 tacctgtacacgctcaactaccaggcgcatctcaccggcgctccggtggcgcggccggtg 2291 Query: 182 ttcttctcgttcccggacttcgcgccgtgctacggcgtgagcaaccagttcctactcggc 241 ||||||||||||||||||||| ||||||||||||| |||||| |||| ||| |||||| Sbjct: 2292 ttcttctcgttcccggacttcacgccgtgctacgggctgagcacgcagtacctgctcggc 2351 Query: 242 gccggcgtcatggtgtccccggtcctcgagcagggcgccagctccgtggacgcggtgttc 301 || ||||||||||||| ||||| |||||||||||||||| ||| ||| ||| ||||| Sbjct: 2352 gcgagcgtcatggtgtcgccggtgctcgagcagggcgccacctcggtgagcgccatgttc 2411 Query: 302 ccgccgggcacgtggtacaacctgttcgacacaagcaaggcggtggtgtccacgggc 358 |||||||| | |||||||||||||||||||| | ||||| ||||||||||| |||| Sbjct: 2412 ccgccggggagctggtacaacctgttcgacacgaccaaggtggtggtgtccaggggc 2468
>dbj|AK063966.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-A04, full insert sequence Length = 3193 Score = 391 bits (197), Expect = e-105 Identities = 317/357 (88%) Strand = Plus / Plus Query: 2 ttctacccgttctcaagggaccacgccaacttcgcctcggcgaggcaggagctgtaccag 61 |||||||||||||| |||||||| ||||||||||| ||| |||||||||||||||| | Sbjct: 2111 ttctacccgttctccagggaccatgccaacttcgcgtcgccgaggcaggagctgtatgtg 2170 Query: 62 tgggagtccgtggcgaggtcggcgcggaacgcgctcggcatgcggtacaggatgctcccg 121 |||||||||||||| | |||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 2171 tgggagtccgtggccaagtcggctcggaacgcgctcggcatgcggtacaggctgctccct 2230 Query: 122 tacctgtacacgctcaactaccaggcgcacctcaccggcgctcccgtggcgcggccgctc 181 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| | Sbjct: 2231 tacctgtacacgctcaactaccaggcgcatctcaccggcgctccggtggcgcggccggtg 2290 Query: 182 ttcttctcgttcccggacttcgcgccgtgctacggcgtgagcaaccagttcctactcggc 241 ||||||||||||||||||||| ||||||||||||| |||||| |||| ||| |||||| Sbjct: 2291 ttcttctcgttcccggacttcacgccgtgctacgggctgagcacgcagtacctgctcggc 2350 Query: 242 gccggcgtcatggtgtccccggtcctcgagcagggcgccagctccgtggacgcggtgttc 301 || ||||||||||||| ||||| |||||||||||||||| ||| ||| ||| ||||| Sbjct: 2351 gcgagcgtcatggtgtcgccggtgctcgagcagggcgccacctcggtgagcgccatgttc 2410 Query: 302 ccgccgggcacgtggtacaacctgttcgacacaagcaaggcggtggtgtccacgggc 358 |||||||| | |||||||||||||||||||| | ||||| ||||||||||| |||| Sbjct: 2411 ccgccggggagctggtacaacctgttcgacacgaccaaggtggtggtgtccaggggc 2467
>dbj|AK110956.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-A07, full insert sequence Length = 1990 Score = 383 bits (193), Expect = e-103 Identities = 316/357 (88%) Strand = Plus / Minus Query: 2 ttctacccgttctcaagggaccacgccaacttcgcctcggcgaggcaggagctgtaccag 61 |||||||||||||| |||||||| ||||||||||| ||| |||||||||||||||| | Sbjct: 797 ttctacccgttctccagggaccatgccaacttcgcgtcgccgaggcaggagctgtatgtg 738 Query: 62 tgggagtccgtggcgaggtcggcgcggaacgcgctcggcatgcggtacaggatgctcccg 121 |||||||||||||| | |||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 737 tgggagtccgtggccaagtcggctcggaacgcgctcggcatgcggtacaggctgctccct 678 Query: 122 tacctgtacacgctcaactaccaggcgcacctcaccggcgctcccgtggcgcggccgctc 181 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| | Sbjct: 677 tacctgtacacgctcaactaccaggcgcatctcaccggcgctccggtggcgcggccggtg 618 Query: 182 ttcttctcgttcccggacttcgcgccgtgctacggcgtgagcaaccagttcctactcggc 241 ||||||||||||||||||||| ||||||||||||| |||||| |||| ||| ||||| Sbjct: 617 ttcttctcgttcccggacttcacgccgtgctacgggctgagcacgcagtacctgttcggc 558 Query: 242 gccggcgtcatggtgtccccggtcctcgagcagggcgccagctccgtggacgcggtgttc 301 || ||||||||||||| ||||| |||||||||||||||| ||| ||| ||| ||||| Sbjct: 557 gcgagcgtcatggtgtcgccggtgctcgagcagggcgccacctcggtgagcgccatgttc 498 Query: 302 ccgccgggcacgtggtacaacctgttcgacacaagcaaggcggtggtgtccacgggc 358 |||||||| | |||||||||||||||||||| | ||||| ||||||||||| |||| Sbjct: 497 ccgccggggagctggtacaacctgttcgacacgaccaaggtggtggtgtccaggggc 441
>gb|AY109891.1| Zea mays CL53767_1 mRNA sequence Length = 812 Score = 167 bits (84), Expect = 4e-38 Identities = 135/152 (88%) Strand = Plus / Plus Query: 2 ttctacccgttctcaagggaccacgccaacttcgcctcggcgaggcaggagctgtaccag 61 |||||||| ||||| |||||||| ||||||||||| || |||||||||||||||| Sbjct: 360 ttctaccccttctccagggaccatgccaacttcgcgtcaccgaggcaggagctgtatgtc 419 Query: 62 tgggagtccgtggcgaggtcggcgcggaacgcgctcggcatgcggtacaggatgctcccg 121 ||||| |||||||||| ||| || ||||||||||||||||||||||||| | ||||||| Sbjct: 420 tgggactccgtggcgaagtctgctcggaacgcgctcggcatgcggtacaagctgctcccc 479 Query: 122 tacctgtacacgctcaactaccaggcgcacct 153 |||||||||||||||||||||||||||||||| Sbjct: 480 tacctgtacacgctcaactaccaggcgcacct 511 Score = 129 bits (65), Expect = 8e-27 Identities = 119/137 (86%) Strand = Plus / Plus Query: 182 ttcttctcgttcccggacttcgcgccgtgctacggcgtgagcaaccagttcctactcggc 241 |||||||| ||||| |||||| ||||||||||||| |||||| |||||||| ||||| Sbjct: 540 ttcttctccttccccgacttcacgccgtgctacgggctgagcacgcagttcctgctcggt 599 Query: 242 gccggcgtcatggtgtccccggtcctcgagcagggcgccagctccgtggacgcggtgttc 301 ||||||||||||||||||||||||||||||||||||||| || ||| ||| ||||| Sbjct: 600 cccggcgtcatggtgtccccggtcctcgagcagggcgccacttcggtgagcgccatgttc 659 Query: 302 ccgccgggcacgtggta 318 ||||||||||| ||||| Sbjct: 660 ccgccgggcacctggta 676 Score = 58.0 bits (29), Expect = 3e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 383 gcgccgctgaacgaggtgaacgtgcacgtgcaccagggcacggtcctgccgctgcag 439 ||||||||||||||| | |||||||||||| ||||| |||| |||||||| ||||| Sbjct: 738 gcgccgctgaacgagatcaacgtgcacgtgtaccagaacacgatcctgccgatgcag 794
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 135 bits (68), Expect = 1e-28 Identities = 122/140 (87%) Strand = Plus / Minus Query: 50 gagctgtaccagtgggagtccgtggcgaggtcggcgcggaacgcgctcggcatgcggtac 109 |||||||||| ||||||||| ||||||||||||||| |||| ||||||||| |||| ||| Sbjct: 27662755 gagctgtacctgtgggagtcggtggcgaggtcggcgaggaaggcgctcggcctgcgctac 27662696 Query: 110 aggatgctcccgtacctgtacacgctcaactaccaggcgcacctcaccggcgctcccgtg 169 || ||||||| ||| |||||||||||| ||| |||||||| ||||||||| ||| | Sbjct: 27662695 cggctgctcccctacttgtacacgctcatgtacgaggcgcacaccaccggcgcgcccatc 27662636 Query: 170 gcgcggccgctcttcttctc 189 |||||||||||||||||||| Sbjct: 27662635 gcgcggccgctcttcttctc 27662616 Score = 119 bits (60), Expect = 8e-24 Identities = 120/140 (85%) Strand = Plus / Plus Query: 50 gagctgtaccagtgggagtccgtggcgaggtcggcgcggaacgcgctcggcatgcggtac 109 |||||||||| |||||| || ||||||||||||||| |||| ||||||||| |||| ||| Sbjct: 27721282 gagctgtacctgtgggaatcggtggcgaggtcggcgaggaaggcgctcggcctgcgctac 27721341 Query: 110 aggatgctcccgtacctgtacacgctcaactaccaggcgcacctcaccggcgctcccgtg 169 || ||||||| ||| |||||||||||| ||| |||||||| ||| ||||| ||| | Sbjct: 27721342 cggctgctcccctacttgtacacgctcatgtacgaggcgcacaccacgggcgcgcccatc 27721401 Query: 170 gcgcggccgctcttcttctc 189 |||||||||||||||||||| Sbjct: 27721402 gcgcggccgctcttcttctc 27721421 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 65 gagtccgtggcgaggtcggcg 85 ||||||||||||||||||||| Sbjct: 15172657 gagtccgtggcgaggtcggcg 15172677 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 ttctacccgttctcaagggaccac 25 |||||||||||||| ||||||||| Sbjct: 27721234 ttctacccgttctcgagggaccac 27721257 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 gagtccgtggcgaggtcggc 84 |||||||||||||||||||| Sbjct: 15172601 gagtccgtggcgaggtcggc 15172620
>dbj|AP004989.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1153E06 Length = 174588 Score = 135 bits (68), Expect = 1e-28 Identities = 122/140 (87%) Strand = Plus / Minus Query: 50 gagctgtaccagtgggagtccgtggcgaggtcggcgcggaacgcgctcggcatgcggtac 109 |||||||||| ||||||||| ||||||||||||||| |||| ||||||||| |||| ||| Sbjct: 12010 gagctgtacctgtgggagtcggtggcgaggtcggcgaggaaggcgctcggcctgcgctac 11951 Query: 110 aggatgctcccgtacctgtacacgctcaactaccaggcgcacctcaccggcgctcccgtg 169 || ||||||| ||| |||||||||||| ||| |||||||| ||||||||| ||| | Sbjct: 11950 cggctgctcccctacttgtacacgctcatgtacgaggcgcacaccaccggcgcgcccatc 11891 Query: 170 gcgcggccgctcttcttctc 189 |||||||||||||||||||| Sbjct: 11890 gcgcggccgctcttcttctc 11871 Score = 119 bits (60), Expect = 8e-24 Identities = 120/140 (85%) Strand = Plus / Plus Query: 50 gagctgtaccagtgggagtccgtggcgaggtcggcgcggaacgcgctcggcatgcggtac 109 |||||||||| |||||| || ||||||||||||||| |||| ||||||||| |||| ||| Sbjct: 70537 gagctgtacctgtgggaatcggtggcgaggtcggcgaggaaggcgctcggcctgcgctac 70596 Query: 110 aggatgctcccgtacctgtacacgctcaactaccaggcgcacctcaccggcgctcccgtg 169 || ||||||| ||| |||||||||||| ||| |||||||| ||| ||||| ||| | Sbjct: 70597 cggctgctcccctacttgtacacgctcatgtacgaggcgcacaccacgggcgcgcccatc 70656 Query: 170 gcgcggccgctcttcttctc 189 |||||||||||||||||||| Sbjct: 70657 gcgcggccgctcttcttctc 70676 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 ttctacccgttctcaagggaccac 25 |||||||||||||| ||||||||| Sbjct: 70489 ttctacccgttctcgagggaccac 70512
>dbj|AK119824.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-177-D07, full insert sequence Length = 2829 Score = 135 bits (68), Expect = 1e-28 Identities = 122/140 (87%) Strand = Plus / Plus Query: 50 gagctgtaccagtgggagtccgtggcgaggtcggcgcggaacgcgctcggcatgcggtac 109 |||||||||| ||||||||| ||||||||||||||| |||| ||||||||| |||| ||| Sbjct: 1900 gagctgtacctgtgggagtcggtggcgaggtcggcgaggaaggcgctcggcctgcgctac 1959 Query: 110 aggatgctcccgtacctgtacacgctcaactaccaggcgcacctcaccggcgctcccgtg 169 || ||||||| ||| |||||||||||| ||| |||||||| ||||||||| ||| | Sbjct: 1960 cggctgctcccctacttgtacacgctcatgtacgaggcgcacaccaccggcgcgcccatc 2019 Query: 170 gcgcggccgctcttcttctc 189 |||||||||||||||||||| Sbjct: 2020 gcgcggccgctcttcttctc 2039
>dbj|AP003728.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0710B08 Length = 186991 Score = 119 bits (60), Expect = 8e-24 Identities = 120/140 (85%) Strand = Plus / Plus Query: 50 gagctgtaccagtgggagtccgtggcgaggtcggcgcggaacgcgctcggcatgcggtac 109 |||||||||| |||||| || ||||||||||||||| |||| ||||||||| |||| ||| Sbjct: 23791 gagctgtacctgtgggaatcggtggcgaggtcggcgaggaaggcgctcggcctgcgctac 23850 Query: 110 aggatgctcccgtacctgtacacgctcaactaccaggcgcacctcaccggcgctcccgtg 169 || ||||||| ||| |||||||||||| ||| |||||||| ||| ||||| ||| | Sbjct: 23851 cggctgctcccctacttgtacacgctcatgtacgaggcgcacaccacgggcgcgcccatc 23910 Query: 170 gcgcggccgctcttcttctc 189 |||||||||||||||||||| Sbjct: 23911 gcgcggccgctcttcttctc 23930 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 ttctacccgttctcaagggaccac 25 |||||||||||||| ||||||||| Sbjct: 23743 ttctacccgttctcgagggaccac 23766
>dbj|AK121588.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037N10, full insert sequence Length = 2804 Score = 119 bits (60), Expect = 8e-24 Identities = 120/140 (85%) Strand = Plus / Plus Query: 50 gagctgtaccagtgggagtccgtggcgaggtcggcgcggaacgcgctcggcatgcggtac 109 |||||||||| |||||| || ||||||||||||||| |||| ||||||||| |||| ||| Sbjct: 1878 gagctgtacctgtgggaatcggtggcgaggtcggcgaggaaggcgctcggcctgcgctac 1937 Query: 110 aggatgctcccgtacctgtacacgctcaactaccaggcgcacctcaccggcgctcccgtg 169 || ||||||| ||| |||||||||||| ||| |||||||| ||| ||||| ||| | Sbjct: 1938 cggctgctcccctacttgtacacgctcatgtacgaggcgcacaccacgggcgcgcccatc 1997 Query: 170 gcgcggccgctcttcttctc 189 |||||||||||||||||||| Sbjct: 1998 gcgcggccgctcttcttctc 2017 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 ttctacccgttctcaagggaccac 25 |||||||||||||| ||||||||| Sbjct: 1830 ttctacccgttctcgagggaccac 1853
>dbj|AK105449.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-B12, full insert sequence Length = 2873 Score = 119 bits (60), Expect = 8e-24 Identities = 120/140 (85%) Strand = Plus / Plus Query: 50 gagctgtaccagtgggagtccgtggcgaggtcggcgcggaacgcgctcggcatgcggtac 109 |||||||||| |||||| || ||||||||||||||| |||| ||||||||| |||| ||| Sbjct: 1946 gagctgtacctgtgggaatcggtggcgaggtcggcgaggaaggcgctcggcctgcgctac 2005 Query: 110 aggatgctcccgtacctgtacacgctcaactaccaggcgcacctcaccggcgctcccgtg 169 || ||||||| ||| |||||||||||| ||| |||||||| ||| ||||| ||| | Sbjct: 2006 cggctgctcccctacttgtacacgctcatgtacgaggcgcacaccacgggcgcgcccatc 2065 Query: 170 gcgcggccgctcttcttctc 189 |||||||||||||||||||| Sbjct: 2066 gcgcggccgctcttcttctc 2085 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 ttctacccgttctcaagggaccac 25 |||||||||||||| ||||||||| Sbjct: 1898 ttctacccgttctcgagggaccac 1921
>gb|BT019289.1| Zea mays clone Contig962.F mRNA sequence Length = 1946 Score = 79.8 bits (40), Expect = 7e-12 Identities = 115/140 (82%) Strand = Plus / Minus Query: 50 gagctgtaccagtgggagtccgtggcgaggtcggcgcggaacgcgctcggcatgcggtac 109 |||||||||| ||||||| |||||| |||||||| |||| |||||||| |||| ||| Sbjct: 942 gagctgtacctgtgggagctggtggcgcggtcggcgaggaaggcgctcgggctgcgctac 883 Query: 110 aggatgctcccgtacctgtacacgctcaactaccaggcgcacctcaccggcgctcccgtg 169 || |||| |||||| |||||||||| | ||| |||||||| ||| || || ||| | Sbjct: 882 cggctgcttccgtacatgtacacgctgatgtacgaggcgcacaccacgggagcgcccatc 823 Query: 170 gcgcggccgctcttcttctc 189 |||||||||||||||||||| Sbjct: 822 gcgcggccgctcttcttctc 803
>gb|AF118226.1|AF118226 Hordeum vulgare high pI alpha-glucosidase (AGL97) gene, complete cds Length = 7113 Score = 56.0 bits (28), Expect = 1e-04 Identities = 109/136 (80%) Strand = Plus / Plus Query: 54 tgtaccagtgggagtccgtggcgaggtcggcgcggaacgcgctcggcatgcggtacagga 113 |||||| |||| ||| |||||| ||||||| |||| |||||||| | |||||| | Sbjct: 6287 tgtacctgtggccgtcggtggcggcgtcggcgaggaaggcgctcgggctccggtaccagc 6346 Query: 114 tgctcccgtacctgtacacgctcaactaccaggcgcacctcaccggcgctcccgtggcgc 173 ||||||| ||| | |||||||||| ||| |||||||| | || || || ||| | |||| Sbjct: 6347 tgctcccttacttctacacgctcatgtacgaggcgcacatgacgggggcgcccatcgcgc 6406 Query: 174 ggccgctcttcttctc 189 |||||||||||||||| Sbjct: 6407 ggccgctcttcttctc 6422
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 27 ccaacttcgcctcggcgaggca 48 |||||||||||||||||||||| Sbjct: 11607369 ccaacttcgcctcggcgaggca 11607390
>dbj|AP005830.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1120F06 Length = 186712 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 27 ccaacttcgcctcggcgaggca 48 |||||||||||||||||||||| Sbjct: 171027 ccaacttcgcctcggcgaggca 171048
>dbj|AP006479.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1272H04 Length = 87113 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 27 ccaacttcgcctcggcgaggca 48 |||||||||||||||||||||| Sbjct: 52741 ccaacttcgcctcggcgaggca 52762
>dbj|AK121178.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083G22, full insert sequence Length = 3866 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 27 ccaacttcgcctcggcgaggca 48 |||||||||||||||||||||| Sbjct: 109 ccaacttcgcctcggcgaggca 130
>dbj|AK073416.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040D17, full insert sequence Length = 3852 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 27 ccaacttcgcctcggcgaggca 48 |||||||||||||||||||||| Sbjct: 109 ccaacttcgcctcggcgaggca 130
>ref|NM_001031351.1| Gallus gallus tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase (TRMU), mRNA Length = 2905 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 268 cgagcagggcgccagctccgtggac 292 ||||||||||||| ||||||||||| Sbjct: 158 cgagcagggcgcctgctccgtggac 182
>emb|AJ719974.1| Gallus gallus mRNA for hypothetical protein, clone 8p20 Length = 2905 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 268 cgagcagggcgccagctccgtggac 292 ||||||||||||| ||||||||||| Sbjct: 158 cgagcagggcgcctgctccgtggac 182
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 65 gagtccgtggcgaggtcggcg 85 ||||||||||||||||||||| Sbjct: 2141142 gagtccgtggcgaggtcggcg 2141162
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 294 cggtgttcccgccgggcacgt 314 ||||||||||||||||||||| Sbjct: 199909 cggtgttcccgccgggcacgt 199889
>dbj|AP005763.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0015G09 Length = 140893 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 65 gagtccgtggcgaggtcggcg 85 ||||||||||||||||||||| Sbjct: 47171 gagtccgtggcgaggtcggcg 47191 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 gagtccgtggcgaggtcggc 84 |||||||||||||||||||| Sbjct: 47115 gagtccgtggcgaggtcggc 47134
>dbj|AP005910.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0034G14 Length = 154120 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 65 gagtccgtggcgaggtcggcg 85 ||||||||||||||||||||| Sbjct: 151977 gagtccgtggcgaggtcggcg 151997 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 gagtccgtggcgaggtcggc 84 |||||||||||||||||||| Sbjct: 151921 gagtccgtggcgaggtcggc 151940
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 65 gagtccgtggcgaggtcggcg 85 ||||||||||||||||||||| Sbjct: 2141086 gagtccgtggcgaggtcggcg 2141106
>emb|AL928756.4|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb0077O07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132703 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 65 gagtccgtggcgaggtcggcg 85 ||||||||||||||||||||| Sbjct: 23366 gagtccgtggcgaggtcggcg 23386
>ref|XM_956314.1| Neurospora crassa OR74A hypothetical protein ( (AL451017) related to DNA polymerase Tdt-N [Neurospora crassa OR74A] ) (NCU01321.1) partial mRNA Length = 1809 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 ccgctcttcttctcgttccc 195 |||||||||||||||||||| Sbjct: 1436 ccgctcttcttctcgttccc 1417
>ref|XM_326813.1| Neurospora crassa OR74A hypothetical protein ( (AL451017) related to DNA polymerase Tdt-N [Neurospora crassa OR74A] ) (NCU01321.1) partial mRNA Length = 1809 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 ccgctcttcttctcgttccc 195 |||||||||||||||||||| Sbjct: 1436 ccgctcttcttctcgttccc 1417
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 254 gtgtccccggtcctcgagcagggc 277 |||||| ||||||||||||||||| Sbjct: 3085825 gtgtccgcggtcctcgagcagggc 3085848
>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29 Length = 291000 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 cgcggtgttcccgccgggca 311 |||||||||||||||||||| Sbjct: 278423 cgcggtgttcccgccgggca 278404
>emb|AL513464.1|NCB12K8 Neurospora crassa DNA linkage group V BAC clone B12K8 Length = 67453 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 ccgctcttcttctcgttccc 195 |||||||||||||||||||| Sbjct: 54251 ccgctcttcttctcgttccc 54270
>emb|AL451017.1|NC12F11 Neurospora crassa DNA linkage group V Cosmid contig 12F11 Length = 74317 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 ccgctcttcttctcgttccc 195 |||||||||||||||||||| Sbjct: 3716 ccgctcttcttctcgttccc 3735
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 acgtggtacaacctgttcga 330 |||||||||||||||||||| Sbjct: 2126943 acgtggtacaacctgttcga 2126962
>gb|U22450.1|HVU22450 Hordeum vulgare alpha-glucosidase mRNA, complete cds Length = 2738 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 gcgcggccgctcttcttctc 189 |||||||||||||||||||| Sbjct: 1962 gcgcggccgctcttcttctc 1981
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome Length = 3184243 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 ccgtcaggctcccggcgccg 388 |||||||||||||||||||| Sbjct: 2959586 ccgtcaggctcccggcgccg 2959605 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,188,403 Number of Sequences: 3902068 Number of extensions: 2188403 Number of successful extensions: 45791 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45063 Number of HSP's gapped (non-prelim): 726 length of query: 442 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 420 effective length of database: 17,147,199,772 effective search space: 7201823904240 effective search space used: 7201823904240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)